Wall clock time and date at job start Tue Mar 31 2020 15:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.58599 * 2 1 4 4 C 1.53188 * 109.70179 * 239.64435 * 2 1 3 5 5 C 1.53048 * 109.31304 * 185.50950 * 4 2 1 6 6 C 1.53035 * 109.53642 * 61.36299 * 5 4 2 7 7 H 1.09000 * 109.49581 * 178.65700 * 6 5 4 8 8 N 1.46499 * 109.50064 * 58.59109 * 6 5 4 9 9 C 1.34770 * 120.00410 * 154.99939 * 8 6 5 10 10 O 1.21281 * 120.00167 * 359.97438 * 9 8 6 11 11 C 1.50701 * 120.00222 * 180.02562 * 9 8 6 12 12 C 1.53002 * 109.46790 * 299.99494 * 11 9 8 13 13 C 1.52996 * 109.47218 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47140 * 60.00020 * 13 12 11 15 15 C 1.53004 * 109.47128 * 180.02562 * 14 13 12 16 16 C 1.53006 * 109.47030 * 60.00131 * 14 13 12 17 17 C 1.53002 * 109.47048 * 300.00083 * 14 13 12 18 18 C 1.52996 * 109.47218 * 59.99964 * 17 14 13 19 19 C 1.53624 * 109.24403 * 298.51188 * 6 5 4 20 20 N 1.46920 * 109.58482 * 120.28471 * 2 1 3 21 21 C 1.36940 * 120.63506 * 353.51713 * 20 2 1 22 22 H 1.07998 * 119.99591 * 29.16235 * 21 20 2 23 23 C 1.38812 * 120.00221 * 209.44243 * 21 20 2 24 24 N 1.31629 * 119.99795 * 14.71431 * 23 21 20 25 25 Si 1.86793 * 120.00266 * 194.71551 * 23 21 20 26 26 H 1.48502 * 109.46955 * 59.99761 * 25 23 21 27 27 H 1.48498 * 109.47504 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47114 * 299.99961 * 25 23 21 29 29 H 1.08996 * 109.47124 * 299.71206 * 1 2 3 30 30 H 1.09003 * 109.46922 * 59.71436 * 1 2 3 31 31 H 1.09007 * 109.47017 * 179.71549 * 1 2 3 32 32 H 1.08997 * 109.49891 * 305.45966 * 4 2 1 33 33 H 1.09000 * 109.49899 * 65.52482 * 4 2 1 34 34 H 1.09001 * 109.46247 * 181.38870 * 5 4 2 35 35 H 1.09004 * 109.45721 * 301.35591 * 5 4 2 36 36 H 0.97002 * 119.99269 * 334.99891 * 8 6 5 37 37 H 1.09001 * 109.47588 * 59.99262 * 11 9 8 38 38 H 1.09000 * 109.47386 * 300.00289 * 12 11 9 39 39 H 1.09003 * 109.46965 * 59.99997 * 12 11 9 40 40 H 1.09000 * 109.47165 * 300.00408 * 13 12 11 41 41 H 1.08997 * 109.47203 * 179.97438 * 13 12 11 42 42 H 1.09000 * 109.46745 * 180.02562 * 15 14 13 43 43 H 1.08997 * 109.47022 * 299.99684 * 15 14 13 44 44 H 1.08993 * 109.47043 * 60.00133 * 15 14 13 45 45 H 1.08998 * 109.46539 * 299.99970 * 16 14 13 46 46 H 1.08992 * 109.46706 * 60.00090 * 16 14 13 47 47 H 1.08995 * 109.46865 * 180.02562 * 16 14 13 48 48 H 1.09000 * 109.47386 * 299.99691 * 17 14 13 49 49 H 1.09003 * 109.46965 * 179.97438 * 17 14 13 50 50 H 1.08997 * 109.47203 * 180.02562 * 18 17 14 51 51 H 1.09000 * 109.47165 * 59.99592 * 18 17 14 52 52 H 1.08999 * 109.74151 * 295.12144 * 19 6 5 53 53 H 1.09004 * 109.66779 * 174.54903 * 19 6 5 54 54 H 0.96997 * 119.99642 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 -1.2445 5 6 3.5706 -0.8444 -1.1674 6 6 3.9602 -1.6608 0.0670 7 1 5.0446 -1.7629 0.1083 8 7 3.3466 -2.9888 -0.0114 9 6 3.9044 -4.0284 0.6400 10 8 4.9146 -3.8647 1.2909 11 6 3.2736 -5.3946 0.5589 12 6 1.8490 -5.3322 1.1137 13 6 1.2087 -6.7193 1.0319 14 6 2.0334 -7.7111 1.8548 15 6 1.3934 -9.0984 1.7725 16 6 2.0740 -7.2533 3.3142 17 6 3.4580 -7.7735 1.3000 18 6 4.0983 -6.3864 1.3817 19 6 3.4660 -0.9375 1.3290 20 7 2.0225 -0.6980 1.1953 21 6 1.1534 -1.1126 2.1690 22 1 0.1371 -1.3712 1.9110 23 6 1.5771 -1.1948 3.4883 24 7 2.6981 -0.6119 3.8571 25 14 0.5563 -2.1328 4.7403 26 1 0.4308 -3.5500 4.3148 27 1 1.2212 -2.0718 6.0667 28 1 -0.7943 -1.5228 4.8347 29 1 -0.3633 0.5093 0.8925 30 1 -0.3633 0.5183 -0.8874 31 1 -0.3633 -1.0277 -0.0051 32 1 1.6080 -1.7257 -1.2905 33 1 1.7684 -0.1675 -2.1365 34 1 3.9430 -1.3408 -2.0635 35 1 4.0072 0.1519 -1.0963 36 1 2.5388 -3.1198 -0.5322 37 1 3.2445 -5.7203 -0.4809 38 1 1.8779 -5.0065 2.1535 39 1 1.2616 -4.6253 0.5277 40 1 1.1798 -7.0455 -0.0077 41 1 0.1940 -6.6750 1.4276 42 1 1.9808 -9.8048 2.3591 43 1 0.3785 -9.0543 2.1675 44 1 1.3649 -9.4243 0.7328 45 1 2.5302 -6.2651 3.3723 46 1 1.0592 -7.2089 3.7093 47 1 2.6619 -7.9596 3.9002 48 1 3.4291 -8.0996 0.2603 49 1 4.0457 -8.4797 1.8865 50 1 5.1130 -6.4307 0.9861 51 1 4.1272 -6.0602 2.4214 52 1 3.9860 0.0145 1.4352 53 1 3.6537 -1.5585 2.2050 54 1 2.9939 -0.6690 4.7791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072104832.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:41 Heat of formation + Delta-G solvation = -67.998887 kcal Electronic energy + Delta-G solvation = -30564.261008 eV Core-core repulsion = 26920.176862 eV Total energy + Delta-G solvation = -3644.084147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.45103 -40.04529 -38.86050 -35.74160 -34.54112 -34.26976 -32.15495 -31.72271 -31.50517 -28.22361 -28.15013 -27.51906 -26.60529 -23.91908 -23.57552 -23.37565 -22.06495 -21.15118 -20.33246 -19.30941 -18.31970 -18.09674 -17.10087 -16.66512 -16.14666 -15.83976 -15.78930 -15.71125 -15.40119 -15.05922 -14.85438 -14.68431 -14.50440 -14.20272 -13.92839 -13.85758 -13.46891 -13.37851 -13.16193 -12.96675 -12.85401 -12.81640 -12.59845 -12.57350 -12.53598 -12.42157 -12.29540 -12.12951 -12.07796 -11.86646 -11.85031 -11.56950 -11.33891 -11.20880 -11.09927 -11.03830 -10.84190 -10.56525 -10.43982 -9.86065 -8.55870 -7.80698 -5.25749 1.38671 1.42383 1.46621 1.81950 2.46708 2.50786 3.35452 3.64643 3.67145 3.70899 3.77818 4.03559 4.07798 4.11809 4.16382 4.19173 4.24708 4.42685 4.45879 4.50679 4.55540 4.62119 4.66348 4.70089 4.74890 4.83183 4.83777 4.93458 4.96921 4.97843 5.04970 5.06883 5.08993 5.12045 5.13337 5.15842 5.17548 5.21487 5.28038 5.31126 5.33586 5.39294 5.51506 5.54369 5.57963 5.63214 5.65342 5.71896 5.76773 5.81507 6.45253 6.78969 7.19950 7.49220 7.94705 8.45583 9.24240 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.005419 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.077216 B = 5165.511940 C = 6227.278878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.010 0.990 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.126 3.874 7 H 0.058 0.942 8 N -0.690 5.690 9 C 0.506 3.494 10 O -0.598 6.598 11 C -0.091 4.091 12 C -0.106 4.106 13 C -0.099 4.099 14 C -0.066 4.066 15 C -0.134 4.134 16 C -0.149 4.149 17 C -0.096 4.096 18 C -0.098 4.098 19 C 0.174 3.826 20 N -0.592 5.592 21 C -0.229 4.229 22 H 0.077 0.923 23 C -0.054 4.054 24 N -0.939 5.939 25 Si 0.943 3.057 26 H -0.277 1.277 27 H -0.308 1.308 28 H -0.272 1.272 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.406 0.594 37 H 0.125 0.875 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.032 0.968 46 H 0.049 0.951 47 H 0.058 0.942 48 H 0.085 0.915 49 H 0.069 0.931 50 H 0.059 0.941 51 H 0.037 0.963 52 H -0.010 1.010 53 H 0.047 0.953 54 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.781 -13.679 -13.786 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.028 0.972 4 C -0.156 4.156 5 C -0.147 4.147 6 C 0.020 3.980 7 H 0.076 0.924 8 N -0.341 5.341 9 C 0.293 3.707 10 O -0.480 6.480 11 C -0.112 4.112 12 C -0.144 4.144 13 C -0.136 4.136 14 C -0.066 4.066 15 C -0.191 4.191 16 C -0.206 4.206 17 C -0.134 4.134 18 C -0.136 4.136 19 C 0.047 3.953 20 N -0.316 5.316 21 C -0.359 4.359 22 H 0.095 0.905 23 C -0.248 4.248 24 N -0.587 5.587 25 Si 0.773 3.227 26 H -0.203 1.203 27 H -0.235 1.235 28 H -0.197 1.197 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.243 0.757 37 H 0.143 0.857 38 H 0.051 0.949 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.051 0.949 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.104 0.896 49 H 0.087 0.913 50 H 0.078 0.922 51 H 0.056 0.944 52 H 0.008 0.992 53 H 0.065 0.935 54 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.048 -13.525 -13.193 19.138 hybrid contribution -0.230 0.416 1.753 1.816 sum -3.278 -13.109 -11.440 17.705 Atomic orbital electron populations 1.21718 0.94594 1.01453 1.00730 1.20771 0.94207 0.93072 0.87137 0.97231 1.21940 0.94558 1.01129 0.97994 1.21650 0.97399 0.99705 0.95991 1.21498 0.96037 0.83050 0.97464 0.92375 1.45753 1.29615 1.07692 1.51011 1.21329 0.83750 0.87863 0.77722 1.90635 1.28102 1.86248 1.42966 1.21308 0.96083 0.90475 1.03318 1.21473 0.93618 0.99072 1.00209 1.21577 0.98260 0.92390 1.01355 1.20581 0.95630 0.96201 0.94186 1.21795 1.00252 0.94379 1.02651 1.22001 1.01177 1.00403 0.97013 1.21569 0.94636 0.94848 1.02327 1.21329 0.98331 0.95013 0.98967 1.20914 0.84184 0.94936 0.95314 1.44248 1.02013 1.65503 1.19823 1.19347 0.95085 1.35267 0.86249 0.90525 1.25695 0.98793 1.01415 0.98947 1.70161 1.25454 1.46950 1.16104 0.85682 0.78712 0.79672 0.78619 1.20288 1.23478 1.19729 0.94792 0.90643 0.92756 0.91642 0.89226 0.89642 0.91301 0.75686 0.85749 0.94945 0.91148 0.89155 0.91751 0.92363 0.92701 0.91087 0.94912 0.93166 0.92249 0.89594 0.91254 0.92197 0.94379 0.99166 0.93498 0.95074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 7.95 71.98 0.57 -3.66 16 2 C 0.15 5.74 3.49 44.98 0.16 5.90 16 3 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 4 C -0.12 -3.25 5.21 30.67 0.16 -3.09 16 5 C -0.11 -3.19 5.58 30.62 0.17 -3.01 16 6 C 0.13 4.88 2.81 45.21 0.13 5.01 16 7 H 0.06 2.42 7.58 -2.39 -0.02 2.40 16 8 N -0.69 -24.07 4.81 -441.49 -2.13 -26.20 16 9 C 0.51 19.20 7.13 87.66 0.62 19.82 16 10 O -0.60 -28.64 15.64 -3.03 -0.05 -28.68 16 11 C -0.09 -2.56 2.53 -11.54 -0.03 -2.59 16 12 C -0.11 -3.02 4.83 30.59 0.15 -2.87 16 13 C -0.10 -2.07 4.73 30.59 0.14 -1.93 16 14 C -0.07 -1.36 0.77 -52.18 -0.04 -1.40 16 15 C -0.13 -2.07 8.47 71.98 0.61 -1.46 16 16 C -0.15 -3.91 7.78 71.98 0.56 -3.35 16 17 C -0.10 -1.95 4.73 30.59 0.14 -1.80 16 18 C -0.10 -2.79 4.22 30.59 0.13 -2.66 16 19 C 0.17 8.73 4.93 86.51 0.43 9.15 16 20 N -0.59 -28.20 2.90 -674.40 -1.96 -30.15 16 21 C -0.23 -12.07 8.59 84.03 0.72 -11.35 16 22 H 0.08 3.84 6.21 -2.91 -0.02 3.83 16 23 C -0.05 -3.10 4.97 84.86 0.42 -2.67 16 24 N -0.94 -58.84 11.13 21.65 0.24 -58.60 16 25 Si 0.94 46.68 29.58 68.60 2.03 48.71 16 26 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 28 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 29 H 0.03 1.29 7.62 -2.39 -0.02 1.27 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.77 7.44 -2.38 -0.02 1.75 16 32 H 0.06 1.71 6.40 -2.39 -0.02 1.70 16 33 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.41 11.91 6.19 -92.71 -0.57 11.33 16 37 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.03 1.21 6.43 -2.39 -0.02 1.19 16 39 H 0.07 1.95 7.56 -2.39 -0.02 1.93 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.03 1.08 4.81 -2.39 -0.01 1.07 16 46 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 51 H 0.04 1.34 6.39 -2.39 -0.02 1.32 16 52 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 53 H 0.05 2.85 6.06 -2.38 -0.01 2.83 16 54 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -72.72 393.48 3.47 -69.25 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.28 Total: 27.64 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 5.05 Total: -1.96 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -3.84 Total: -114.95 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.05 Total: -28.68 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -72.72 3.47 -69.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072104832.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.249 kcal (2) G-P(sol) polarization free energy of solvation -72.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds