Wall clock time and date at job start Tue Mar 31 2020 15:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.58816 * 2 1 4 4 C 1.53189 * 109.59069 * 239.70920 * 2 1 3 5 5 C 1.53043 * 109.31442 * 185.58175 * 4 2 1 6 6 C 1.53032 * 109.53732 * 61.36630 * 5 4 2 7 7 H 1.09005 * 109.50434 * 58.61870 * 6 5 4 8 8 N 1.46497 * 109.49811 * 178.68548 * 6 5 4 9 9 C 1.34776 * 120.00387 * 205.00127 * 8 6 5 10 10 O 1.21282 * 119.99733 * 359.97438 * 9 8 6 11 11 C 1.50701 * 120.00321 * 179.97438 * 9 8 6 12 12 C 1.52995 * 109.47035 * 299.99762 * 11 9 8 13 13 C 1.53004 * 109.46934 * 179.97438 * 12 11 9 14 14 C 1.52993 * 109.47130 * 60.00196 * 13 12 11 15 15 C 1.52998 * 109.47279 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.47238 * 59.99635 * 14 13 12 17 17 C 1.52997 * 109.47478 * 300.00056 * 14 13 12 18 18 C 1.52998 * 109.47114 * 59.99594 * 17 14 13 19 19 C 1.53202 * 109.31362 * 298.63336 * 6 5 4 20 20 N 1.46922 * 108.77235 * 54.63799 * 19 6 5 21 21 C 1.36937 * 120.63083 * 126.36755 * 20 19 6 22 22 H 1.07998 * 120.00244 * 209.02885 * 21 20 19 23 23 C 1.38811 * 119.99891 * 29.03553 * 21 20 19 24 24 N 1.31624 * 119.99918 * 15.01265 * 23 21 20 25 25 Si 1.86801 * 120.00095 * 195.01349 * 23 21 20 26 26 H 1.48495 * 109.47085 * 59.99982 * 25 23 21 27 27 H 1.48501 * 109.47315 * 180.02562 * 25 23 21 28 28 H 1.48508 * 109.46926 * 299.99849 * 25 23 21 29 29 H 1.09004 * 109.47384 * 180.28506 * 1 2 3 30 30 H 1.09000 * 109.47428 * 300.29192 * 1 2 3 31 31 H 1.09007 * 109.46893 * 60.28919 * 1 2 3 32 32 H 1.08998 * 109.49837 * 65.62921 * 4 2 1 33 33 H 1.09009 * 109.49799 * 305.53322 * 4 2 1 34 34 H 1.08996 * 109.45694 * 301.34373 * 5 4 2 35 35 H 1.08997 * 109.44334 * 181.38089 * 5 4 2 36 36 H 0.97004 * 120.00489 * 24.99656 * 8 6 5 37 37 H 1.08996 * 109.46948 * 59.99922 * 11 9 8 38 38 H 1.08996 * 109.47383 * 299.99893 * 12 11 9 39 39 H 1.08999 * 109.46973 * 60.00003 * 12 11 9 40 40 H 1.08996 * 109.47118 * 300.00203 * 13 12 11 41 41 H 1.09004 * 109.47082 * 180.02562 * 13 12 11 42 42 H 1.08999 * 109.47317 * 180.02562 * 15 14 13 43 43 H 1.09004 * 109.47210 * 300.00153 * 15 14 13 44 44 H 1.09005 * 109.47044 * 60.00067 * 15 14 13 45 45 H 1.08994 * 109.47327 * 300.00294 * 16 14 13 46 46 H 1.09004 * 109.46800 * 60.00123 * 16 14 13 47 47 H 1.08999 * 109.47280 * 179.97438 * 16 14 13 48 48 H 1.09007 * 109.46582 * 300.00397 * 17 14 13 49 49 H 1.08999 * 109.47917 * 179.97438 * 17 14 13 50 50 H 1.09004 * 109.47210 * 180.02562 * 18 17 14 51 51 H 1.09002 * 109.47422 * 60.00804 * 18 17 14 52 52 H 1.08999 * 109.58341 * 174.42528 * 19 6 5 53 53 H 1.08997 * 109.58770 * 294.84811 * 19 6 5 54 54 H 0.96998 * 119.99730 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2462 5 6 3.5676 -0.8467 -1.1709 6 6 3.9569 -1.6658 0.0617 7 1 3.4987 -2.6531 0.0021 8 7 5.4142 -1.8055 0.1157 9 6 5.9676 -2.8491 0.7646 10 8 5.2591 -3.6724 1.3043 11 6 7.4667 -2.9931 0.8197 12 6 8.0207 -3.1061 -0.6019 13 6 9.5428 -3.2517 -0.5460 14 6 9.9060 -4.5102 0.2444 15 6 11.4280 -4.6562 0.2998 16 6 9.3013 -5.7363 -0.4427 17 6 9.3520 -4.3974 1.6660 18 6 7.8300 -4.2518 1.6102 19 6 3.4649 -0.9485 1.3228 20 7 2.0225 -0.7009 1.1938 21 6 1.1535 -1.1160 2.1673 22 1 0.1359 -1.3704 1.9101 23 6 1.5805 -1.2098 3.4847 24 7 2.7036 -0.6319 3.8552 25 14 0.5614 -2.1561 4.7318 26 1 0.4322 -3.5695 4.2951 27 1 1.2293 -2.1061 6.0572 28 1 -0.7880 -1.5445 4.8347 29 1 -0.3634 -1.0277 0.0051 30 1 -0.3634 0.5183 0.8873 31 1 -0.3633 0.5094 -0.8926 32 1 1.7662 -0.1644 -2.1370 33 1 1.6030 -1.7239 -1.2933 34 1 4.0062 0.1485 -1.0990 35 1 3.9376 -1.3426 -2.0683 36 1 5.9809 -1.1470 -0.3156 37 1 7.8978 -2.1200 1.3094 38 1 7.5896 -3.9793 -1.0916 39 1 7.7623 -2.2092 -1.1649 40 1 9.9735 -2.3783 -0.0565 41 1 9.9376 -3.3317 -1.5589 42 1 11.6868 -5.5531 0.8625 43 1 11.8224 -4.7368 -0.7132 44 1 11.8592 -3.7828 0.7891 45 1 8.2170 -5.6326 -0.4826 46 1 9.6960 -5.8168 -1.4556 47 1 9.5604 -6.6330 0.1201 48 1 9.7828 -3.5239 2.1555 49 1 9.6103 -5.2942 2.2291 50 1 7.4353 -4.1709 2.6230 51 1 7.3991 -5.1252 1.1207 52 1 3.6517 -1.5743 2.1955 53 1 3.9902 0.0003 1.4319 54 1 3.0021 -0.6977 4.7758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072104833.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:46 Heat of formation + Delta-G solvation = -72.243215 kcal Electronic energy + Delta-G solvation = -29270.146516 eV Core-core repulsion = 25625.878322 eV Total energy + Delta-G solvation = -3644.268194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.46884 -39.98577 -38.97438 -35.99043 -34.69230 -34.31054 -32.20485 -31.76777 -31.52061 -28.22593 -28.15113 -27.47232 -26.49501 -24.08446 -23.59705 -23.20526 -22.00715 -21.25114 -20.67293 -19.30442 -18.33756 -18.10999 -17.30833 -16.77276 -16.33365 -15.91003 -15.70319 -15.48807 -15.41081 -15.09478 -15.00911 -14.84538 -14.47439 -14.21446 -14.07540 -13.71435 -13.54229 -13.33629 -13.17595 -13.04713 -12.77865 -12.76702 -12.70822 -12.57482 -12.53472 -12.31583 -12.29538 -12.12923 -11.99219 -11.87913 -11.85124 -11.66222 -11.41834 -11.30992 -11.14792 -11.08593 -10.84683 -10.54509 -10.53745 -10.01489 -8.63015 -7.85983 -5.32085 1.38723 1.44506 1.48525 1.74380 2.27167 2.50070 3.30154 3.58243 3.66458 3.74895 3.78036 3.96936 4.08815 4.09482 4.12905 4.20858 4.28758 4.39529 4.41181 4.46260 4.56250 4.60015 4.62764 4.70658 4.73840 4.80801 4.88301 4.88988 4.93418 4.97764 4.99946 5.06209 5.08810 5.11951 5.15241 5.16392 5.18400 5.24392 5.28343 5.30554 5.34707 5.38417 5.51804 5.52961 5.53830 5.55225 5.61263 5.67377 5.69097 5.81967 6.40440 6.69554 7.15196 7.41648 7.89737 8.38490 9.18758 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.015834 B = 0.003390 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.941579 B = 8258.200595 C = 9524.790255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.131 3.869 7 H 0.045 0.955 8 N -0.708 5.708 9 C 0.505 3.495 10 O -0.593 6.593 11 C -0.095 4.095 12 C -0.105 4.105 13 C -0.101 4.101 14 C -0.066 4.066 15 C -0.137 4.137 16 C -0.146 4.146 17 C -0.102 4.102 18 C -0.099 4.099 19 C 0.181 3.819 20 N -0.604 5.604 21 C -0.252 4.252 22 H 0.074 0.926 23 C -0.054 4.054 24 N -0.934 5.934 25 Si 0.957 3.043 26 H -0.287 1.287 27 H -0.296 1.296 28 H -0.267 1.267 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.412 0.588 37 H 0.108 0.892 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.045 0.955 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.039 0.961 51 H 0.056 0.944 52 H 0.041 0.959 53 H -0.003 1.003 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.530 -2.938 -14.634 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.024 3.976 7 H 0.064 0.936 8 N -0.360 5.360 9 C 0.293 3.707 10 O -0.473 6.473 11 C -0.116 4.116 12 C -0.142 4.142 13 C -0.138 4.138 14 C -0.066 4.066 15 C -0.194 4.194 16 C -0.203 4.203 17 C -0.139 4.139 18 C -0.138 4.138 19 C 0.054 3.946 20 N -0.328 5.328 21 C -0.382 4.382 22 H 0.092 0.908 23 C -0.249 4.249 24 N -0.580 5.580 25 Si 0.785 3.215 26 H -0.214 1.214 27 H -0.222 1.222 28 H -0.192 1.192 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.249 0.751 37 H 0.126 0.874 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.057 0.943 51 H 0.075 0.925 52 H 0.059 0.941 53 H 0.015 0.985 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 16.059 -3.491 -14.108 21.659 hybrid contribution -0.604 -0.279 1.474 1.617 sum 15.454 -3.770 -12.634 20.314 Atomic orbital electron populations 1.21738 0.94793 1.01089 1.01073 1.20808 0.94283 0.93380 0.86749 0.96002 1.21955 0.94726 1.00763 0.98314 1.21635 0.96981 0.99946 0.95866 1.21468 0.79827 0.98728 0.97561 0.93646 1.45930 1.07323 1.27079 1.55636 1.21488 0.92075 0.80422 0.76764 1.90703 1.65370 1.44370 1.46831 1.21351 0.88703 1.01224 1.00299 1.21562 0.97073 1.02992 0.92616 1.21585 0.93676 0.97493 1.01082 1.20568 0.96013 0.95625 0.94400 1.21820 0.93433 1.01893 1.02262 1.21979 1.00450 0.97220 1.00662 1.21596 0.92928 1.02298 0.97103 1.21328 0.97132 0.96492 0.98802 1.20763 0.83662 0.95171 0.95053 1.44324 1.02592 1.65560 1.20325 1.19453 0.95200 1.36746 0.86832 0.90828 1.25793 0.99065 1.01089 0.98959 1.70154 1.25040 1.46355 1.16451 0.85496 0.78794 0.78893 0.78295 1.21365 1.22246 1.19229 0.93648 0.94358 0.90187 0.88549 0.93141 0.90811 0.89647 0.75141 0.87442 0.92049 0.89776 0.90676 0.90015 0.92787 0.91793 0.92154 0.93568 0.91722 0.92968 0.91122 0.91652 0.94259 0.92529 0.94053 0.98535 0.94701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 7.94 71.98 0.57 -4.17 16 2 C 0.15 6.18 3.50 44.97 0.16 6.33 16 3 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.12 -3.73 5.37 30.67 0.16 -3.57 16 5 C -0.11 -3.17 5.35 30.62 0.16 -3.01 16 6 C 0.13 5.20 2.61 45.07 0.12 5.31 16 7 H 0.05 2.14 7.58 -2.38 -0.02 2.12 16 8 N -0.71 -23.04 4.97 -442.16 -2.20 -25.23 16 9 C 0.50 18.20 7.12 87.66 0.62 18.83 16 10 O -0.59 -28.57 15.65 -3.03 -0.05 -28.62 16 11 C -0.09 -2.38 2.52 -11.54 -0.03 -2.41 16 12 C -0.10 -1.86 4.82 30.59 0.15 -1.72 16 13 C -0.10 -1.37 4.73 30.59 0.14 -1.22 16 14 C -0.07 -1.00 0.77 -52.18 -0.04 -1.04 16 15 C -0.14 -1.63 8.47 71.98 0.61 -1.02 16 16 C -0.15 -2.41 7.78 71.98 0.56 -1.85 16 17 C -0.10 -1.94 4.73 30.59 0.14 -1.79 16 18 C -0.10 -2.66 4.22 30.59 0.13 -2.53 16 19 C 0.18 9.25 4.86 86.37 0.42 9.67 16 20 N -0.60 -31.24 2.99 -675.23 -2.02 -33.26 16 21 C -0.25 -14.43 8.61 84.03 0.72 -13.70 16 22 H 0.07 4.06 6.20 -2.91 -0.02 4.04 16 23 C -0.05 -3.23 4.96 84.86 0.42 -2.81 16 24 N -0.93 -58.96 11.14 21.65 0.24 -58.72 16 25 Si 0.96 48.49 29.58 68.60 2.03 50.52 16 26 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 27 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 28 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 29 H 0.04 1.71 7.40 -2.38 -0.02 1.69 16 30 H 0.04 1.54 7.66 -2.39 -0.02 1.53 16 31 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.41 9.80 8.02 -92.71 -0.74 9.05 16 37 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.06 1.23 6.43 -2.39 -0.02 1.22 16 39 H 0.08 1.20 7.56 -2.39 -0.02 1.18 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.05 0.93 4.81 -2.39 -0.01 0.92 16 46 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 49 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.04 1.26 8.10 -2.39 -0.02 1.24 16 51 H 0.06 1.67 6.39 -2.39 -0.02 1.65 16 52 H 0.04 2.56 6.06 -2.39 -0.01 2.55 16 53 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 54 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -76.73 396.96 3.15 -73.59 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.11 Total: 22.41 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.03 Total: -0.68 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -3.98 Total: -117.22 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.05 Total: -28.62 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Total: -76.73 3.15 -73.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072104833.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.343 kcal (2) G-P(sol) polarization free energy of solvation -76.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds