Wall clock time and date at job start Tue Mar 31 2020 15:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.70082 * 2 1 4 4 C 1.53188 * 109.58799 * 120.35296 * 2 1 3 5 5 C 1.53041 * 109.31660 * 174.42393 * 4 2 1 6 6 C 1.53040 * 109.53239 * 298.63205 * 5 4 2 7 7 H 1.08998 * 109.50524 * 301.38177 * 6 5 4 8 8 N 1.46505 * 109.49637 * 181.31338 * 6 5 4 9 9 C 1.34773 * 120.00011 * 155.00223 * 8 6 5 10 10 O 1.21281 * 120.00272 * 0.02562 * 9 8 6 11 11 C 1.50698 * 120.00150 * 180.02562 * 9 8 6 12 12 C 1.53000 * 109.47329 * 300.00329 * 11 9 8 13 13 C 1.52998 * 109.47308 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.47158 * 59.99817 * 13 12 11 15 15 C 1.52998 * 109.47158 * 180.02562 * 14 13 12 16 16 C 1.53002 * 109.46881 * 60.00039 * 14 13 12 17 17 C 1.53000 * 109.47160 * 300.00273 * 14 13 12 18 18 C 1.52998 * 109.47308 * 59.99818 * 17 14 13 19 19 C 1.53195 * 109.31096 * 61.36731 * 6 5 4 20 20 N 1.46920 * 108.77498 * 305.35943 * 19 6 5 21 21 C 1.36934 * 120.63178 * 233.60750 * 20 19 6 22 22 H 1.08004 * 120.00369 * 150.15862 * 21 20 19 23 23 C 1.38817 * 120.00303 * 330.16114 * 21 20 19 24 24 N 1.31613 * 119.99630 * 344.50447 * 23 21 20 25 25 Si 1.86796 * 120.00103 * 164.49696 * 23 21 20 26 26 H 1.48496 * 109.47230 * 60.00264 * 25 23 21 27 27 H 1.48504 * 109.47075 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47235 * 299.99966 * 25 23 21 29 29 H 1.08998 * 109.46928 * 299.65061 * 1 2 3 30 30 H 1.09001 * 109.46769 * 59.64313 * 1 2 3 31 31 H 1.08994 * 109.46999 * 179.64566 * 1 2 3 32 32 H 1.09004 * 109.50051 * 294.37280 * 4 2 1 33 33 H 1.09007 * 109.49950 * 54.46928 * 4 2 1 34 34 H 1.08998 * 109.46110 * 58.64964 * 5 4 2 35 35 H 1.09000 * 109.46128 * 178.62018 * 5 4 2 36 36 H 0.96996 * 119.99823 * 335.00398 * 8 6 5 37 37 H 1.09005 * 109.47299 * 59.99952 * 11 9 8 38 38 H 1.09005 * 109.46622 * 300.00037 * 12 11 9 39 39 H 1.09002 * 109.47250 * 59.99310 * 12 11 9 40 40 H 1.08995 * 109.47187 * 300.00126 * 13 12 11 41 41 H 1.08998 * 109.47103 * 179.97438 * 13 12 11 42 42 H 1.09004 * 109.47067 * 180.02562 * 15 14 13 43 43 H 1.08998 * 109.47103 * 299.99723 * 15 14 13 44 44 H 1.08995 * 109.47477 * 59.99846 * 15 14 13 45 45 H 1.09001 * 109.47036 * 299.99819 * 16 14 13 46 46 H 1.08998 * 109.47510 * 60.00197 * 16 14 13 47 47 H 1.09002 * 109.46628 * 179.97438 * 16 14 13 48 48 H 1.09005 * 109.46622 * 299.99528 * 17 14 13 49 49 H 1.09002 * 109.47250 * 180.02562 * 17 14 13 50 50 H 1.08998 * 109.47103 * 180.02562 * 18 17 14 51 51 H 1.08995 * 109.47187 * 59.99874 * 18 17 14 52 52 H 1.09003 * 109.58944 * 65.14943 * 19 6 5 53 53 H 1.09009 * 109.58744 * 185.57270 * 19 6 5 54 54 H 0.97009 * 120.00100 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2454 5 6 3.5675 -0.8479 1.1702 6 6 3.9569 -1.6657 -0.0633 7 1 3.4987 -2.6531 -0.0049 8 7 5.4142 -1.8054 -0.1174 9 6 5.9676 -2.8482 -0.7675 10 8 5.2592 -3.6708 -1.3082 11 6 7.4667 -2.9921 -0.8227 12 6 8.0720 -1.7657 -1.5085 13 6 9.5940 -1.9116 -1.5640 14 6 9.9573 -3.1696 -2.3553 15 6 11.4793 -3.3158 -2.4102 16 6 9.4038 -3.0553 -3.7771 17 6 9.3520 -4.3961 -1.6694 18 6 7.8300 -4.2502 -1.6140 19 6 3.4650 -0.9470 -1.3236 20 7 2.0226 -0.6996 -1.1944 21 6 1.1537 -1.1131 -2.1687 22 1 0.1397 -1.3804 -1.9100 23 6 1.5761 -1.1889 -3.4888 24 7 2.6868 -0.5881 -3.8598 25 14 0.5683 -2.1437 -4.7386 26 1 -0.7922 -1.5558 -4.8305 27 1 1.2297 -2.0723 -6.0663 28 1 0.4667 -3.5627 -4.3125 29 1 -0.3633 0.5084 0.8931 30 1 -0.3633 0.5194 -0.8868 31 1 -0.3633 -1.0276 -0.0064 32 1 1.7661 -0.1667 2.1369 33 1 1.6030 -1.7253 1.2914 34 1 4.0062 0.1474 1.0993 35 1 3.9378 -1.3448 2.0669 36 1 5.9808 -1.1473 0.3147 37 1 7.8614 -3.0737 0.1901 38 1 7.6773 -1.6841 -2.5213 39 1 7.8135 -0.8694 -0.9446 40 1 9.9883 -1.9930 -0.5511 41 1 10.0251 -1.0380 -2.0530 42 1 11.7381 -4.2119 -2.9743 43 1 11.9108 -2.4422 -2.8986 44 1 11.8733 -3.3974 -1.3972 45 1 8.3194 -2.9515 -3.7376 46 1 9.8349 -2.1816 -4.2658 47 1 9.6630 -3.9514 -4.3409 48 1 9.7464 -4.4775 -0.6565 49 1 9.6112 -5.2924 -2.2329 50 1 7.3989 -5.1238 -1.1250 51 1 7.4357 -4.1688 -2.6269 52 1 3.9903 0.0020 -1.4317 53 1 3.6518 -1.5719 -2.1971 54 1 2.9822 -0.6413 -4.7823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072104835.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:50 Heat of formation + Delta-G solvation = -72.670719 kcal Electronic energy + Delta-G solvation = -29441.373679 eV Core-core repulsion = 25797.086947 eV Total energy + Delta-G solvation = -3644.286732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.46860 -39.98745 -38.97847 -35.99214 -34.69394 -34.31133 -32.20232 -31.76971 -31.53965 -28.22860 -28.18996 -27.46974 -26.49337 -24.08306 -23.59416 -23.22673 -22.02046 -21.23028 -20.67856 -19.31687 -18.34132 -18.11517 -17.29837 -16.79914 -16.24140 -15.82730 -15.78011 -15.69514 -15.37541 -15.09475 -14.93789 -14.80342 -14.53129 -14.26362 -14.03801 -13.75552 -13.48569 -13.36713 -13.17775 -13.06593 -12.81001 -12.77277 -12.71892 -12.57807 -12.54134 -12.32518 -12.29818 -12.13849 -11.99574 -11.87486 -11.86217 -11.66774 -11.42295 -11.32500 -11.14708 -11.09092 -10.84938 -10.54773 -10.53297 -10.02229 -8.62615 -7.86928 -5.33215 1.37819 1.43752 1.47541 1.73274 2.28401 2.49416 3.29402 3.58370 3.66606 3.74945 3.76881 3.96417 4.07522 4.09238 4.14146 4.19451 4.28166 4.38832 4.41503 4.45817 4.55043 4.60561 4.62184 4.70035 4.70984 4.80691 4.85374 4.88675 4.93139 4.97729 4.99838 5.05939 5.07186 5.11124 5.14138 5.15601 5.18262 5.23056 5.29323 5.30620 5.33948 5.38773 5.51202 5.52327 5.53767 5.54708 5.60612 5.66093 5.68967 5.80765 6.40029 6.69569 7.14798 7.41709 7.89163 8.38473 9.17928 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014034 B = 0.003709 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.735756 B = 7546.630091 C = 8810.378393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.130 3.870 7 H 0.046 0.954 8 N -0.709 5.709 9 C 0.503 3.497 10 O -0.593 6.593 11 C -0.090 4.090 12 C -0.111 4.111 13 C -0.098 4.098 14 C -0.067 4.067 15 C -0.135 4.135 16 C -0.149 4.149 17 C -0.099 4.099 18 C -0.101 4.101 19 C 0.184 3.816 20 N -0.604 5.604 21 C -0.253 4.253 22 H 0.073 0.927 23 C -0.051 4.051 24 N -0.932 5.932 25 Si 0.954 3.046 26 H -0.266 1.266 27 H -0.296 1.296 28 H -0.287 1.287 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.412 0.588 37 H 0.126 0.874 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.037 0.963 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.083 0.917 49 H 0.066 0.934 50 H 0.054 0.946 51 H 0.041 0.959 52 H -0.003 1.003 53 H 0.037 0.963 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.894 -1.329 11.896 20.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.023 3.977 7 H 0.064 0.936 8 N -0.360 5.360 9 C 0.291 3.709 10 O -0.473 6.473 11 C -0.111 4.111 12 C -0.149 4.149 13 C -0.135 4.135 14 C -0.067 4.067 15 C -0.192 4.192 16 C -0.206 4.206 17 C -0.136 4.136 18 C -0.139 4.139 19 C 0.057 3.943 20 N -0.328 5.328 21 C -0.384 4.384 22 H 0.091 0.909 23 C -0.247 4.247 24 N -0.579 5.579 25 Si 0.783 3.217 26 H -0.191 1.191 27 H -0.223 1.223 28 H -0.214 1.214 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.249 0.751 37 H 0.144 0.856 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.056 0.944 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.101 0.899 49 H 0.084 0.916 50 H 0.072 0.928 51 H 0.060 0.940 52 H 0.015 0.985 53 H 0.056 0.944 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 16.422 -1.877 11.365 20.059 hybrid contribution -0.704 -0.260 -1.479 1.659 sum 15.719 -2.137 9.885 18.691 Atomic orbital electron populations 1.21729 0.94782 1.01085 1.01055 1.20811 0.94283 0.93372 0.86744 0.96036 1.21956 0.94720 1.00773 0.98322 1.21638 0.96987 0.99956 0.95854 1.21476 0.79873 0.98755 0.97564 0.93605 1.45935 1.07306 1.27191 1.55570 1.21536 0.92171 0.80381 0.76772 1.90703 1.65418 1.44404 1.46799 1.21339 0.88390 0.98088 1.03293 1.21567 0.97262 0.95947 1.00075 1.21571 0.93120 0.97388 1.01466 1.20580 0.96205 0.95299 0.94567 1.21806 0.93084 1.01857 1.02492 1.22003 1.00221 1.01615 0.96771 1.21581 0.92587 0.97686 1.01739 1.21344 0.97253 0.95937 0.99344 1.20712 0.83684 0.95041 0.94884 1.44318 1.02580 1.65668 1.20231 1.19434 0.95556 1.36713 0.86665 0.90919 1.25786 0.99096 1.00826 0.98956 1.70155 1.25823 1.45574 1.16311 0.85529 0.78892 0.78947 0.78328 1.19125 1.22273 1.21384 0.90191 0.94385 0.93642 0.88542 0.93115 0.90816 0.89620 0.75127 0.85574 0.93963 0.90276 0.89445 0.90965 0.92675 0.92352 0.91361 0.94437 0.92427 0.92760 0.89856 0.91573 0.92763 0.94027 0.98539 0.94419 0.94702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 7.95 71.98 0.57 -4.17 16 2 C 0.15 6.20 3.50 44.97 0.16 6.35 16 3 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.12 -3.74 5.37 30.67 0.16 -3.58 16 5 C -0.11 -3.18 5.35 30.62 0.16 -3.01 16 6 C 0.13 5.17 2.61 45.07 0.12 5.28 16 7 H 0.05 2.15 7.58 -2.39 -0.02 2.14 16 8 N -0.71 -23.01 4.97 -442.16 -2.20 -25.21 16 9 C 0.50 18.08 7.12 87.66 0.62 18.71 16 10 O -0.59 -28.55 15.65 -3.03 -0.05 -28.60 16 11 C -0.09 -2.23 2.52 -11.54 -0.03 -2.25 16 12 C -0.11 -2.46 4.82 30.59 0.15 -2.31 16 13 C -0.10 -1.57 4.73 30.59 0.14 -1.43 16 14 C -0.07 -1.14 0.77 -52.18 -0.04 -1.18 16 15 C -0.14 -1.74 8.47 71.98 0.61 -1.13 16 16 C -0.15 -3.23 7.78 71.98 0.56 -2.67 16 17 C -0.10 -1.79 4.73 30.59 0.14 -1.65 16 18 C -0.10 -2.64 4.22 30.59 0.13 -2.51 16 19 C 0.18 9.42 4.86 86.36 0.42 9.84 16 20 N -0.60 -31.29 2.99 -675.22 -2.02 -33.30 16 21 C -0.25 -14.53 8.58 84.04 0.72 -13.81 16 22 H 0.07 4.02 6.23 -2.91 -0.02 4.00 16 23 C -0.05 -3.07 4.94 84.86 0.42 -2.65 16 24 N -0.93 -58.97 11.23 21.65 0.24 -58.73 16 25 Si 0.95 48.56 29.58 68.60 2.03 50.59 16 26 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 27 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 28 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 29 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.04 1.54 7.67 -2.39 -0.02 1.52 16 31 H 0.04 1.72 7.40 -2.39 -0.02 1.70 16 32 H 0.10 2.31 8.14 -2.38 -0.02 2.30 16 33 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.41 9.77 8.02 -92.71 -0.74 9.03 16 37 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.04 1.23 6.43 -2.38 -0.02 1.21 16 39 H 0.08 1.54 7.56 -2.39 -0.02 1.52 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.04 1.03 4.81 -2.39 -0.01 1.02 16 46 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 49 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 50 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 51 H 0.04 1.35 6.39 -2.39 -0.02 1.34 16 52 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 53 H 0.04 2.33 6.15 -2.38 -0.01 2.32 16 54 H 0.24 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -77.37 397.12 3.15 -74.22 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.11 Total: 23.19 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 5.03 Total: -2.16 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -3.97 Total: -117.24 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.05 Total: -28.60 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.03 Total: 50.59 kcal Total: -77.37 3.15 -74.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072104835.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.548 kcal (2) G-P(sol) polarization free energy of solvation -77.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds