Wall clock time and date at job start Tue Mar 31 2020 15:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.70059 * 2 1 4 4 C 1.53196 * 109.58567 * 239.65196 * 2 1 3 5 5 C 1.53033 * 109.31358 * 185.57563 * 4 2 1 6 6 C 1.53046 * 109.53971 * 61.36458 * 5 4 2 7 7 H 1.08997 * 109.49705 * 58.58352 * 6 5 4 8 8 N 1.46499 * 109.52482 * 178.66626 * 6 5 4 9 9 C 1.34776 * 120.00045 * 204.85225 * 8 6 5 10 10 O 1.21288 * 119.99978 * 0.02562 * 9 8 6 11 11 C 1.50693 * 120.00169 * 180.02562 * 9 8 6 12 12 C 1.53003 * 115.55075 * 34.41688 * 11 9 8 13 13 C 1.52995 * 117.50018 * 248.74559 * 11 9 8 14 14 C 1.53001 * 117.50030 * 0.02562 * 13 11 9 15 15 C 1.53009 * 117.49837 * 145.02000 * 13 11 9 16 16 C 1.53005 * 117.49897 * 180.08413 * 11 9 8 17 17 C 1.52999 * 117.50067 * 214.97961 * 16 11 9 18 18 C 1.52998 * 117.49944 * 359.97438 * 16 11 9 19 19 C 1.53195 * 109.30752 * 298.63390 * 6 5 4 20 20 N 1.46920 * 109.59059 * 120.35864 * 2 1 3 21 21 C 1.36939 * 120.62786 * 353.67205 * 20 2 1 22 22 H 1.07993 * 120.00128 * 30.74680 * 21 20 2 23 23 C 1.38815 * 119.99634 * 210.74286 * 21 20 2 24 24 N 1.31618 * 120.00245 * 12.63511 * 23 21 20 25 25 Si 1.86800 * 119.99908 * 192.63113 * 23 21 20 26 26 H 1.48504 * 109.46997 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47103 * 119.99960 * 25 23 21 28 28 H 1.48494 * 109.47476 * 240.00448 * 25 23 21 29 29 H 1.09004 * 109.46903 * 299.64089 * 1 2 3 30 30 H 1.08999 * 109.47730 * 59.64109 * 1 2 3 31 31 H 1.09000 * 109.46988 * 179.64613 * 1 2 3 32 32 H 1.08997 * 109.50064 * 65.61875 * 4 2 1 33 33 H 1.09005 * 109.51921 * 305.54356 * 4 2 1 34 34 H 1.09003 * 109.46282 * 301.34165 * 5 4 2 35 35 H 1.09006 * 109.46121 * 181.37833 * 5 4 2 36 36 H 0.96994 * 119.99938 * 24.85149 * 8 6 5 37 37 H 1.09004 * 109.46684 * 85.58188 * 12 11 9 38 38 H 1.09000 * 109.47410 * 205.58099 * 12 11 9 39 39 H 1.08998 * 109.46683 * 325.58785 * 12 11 9 40 40 H 1.09005 * 109.47343 * 61.55869 * 14 13 11 41 41 H 1.08996 * 109.47328 * 181.56102 * 14 13 11 42 42 H 1.08998 * 109.46908 * 301.56357 * 14 13 11 43 43 H 1.08998 * 109.46647 * 68.41657 * 15 13 11 44 44 H 1.08998 * 109.46921 * 188.41428 * 15 13 11 45 45 H 1.09001 * 109.46965 * 308.41082 * 15 13 11 46 46 H 1.08995 * 109.47116 * 75.01708 * 17 16 11 47 47 H 1.08996 * 109.47131 * 195.02494 * 17 16 11 48 48 H 1.09002 * 109.46986 * 315.01780 * 17 16 11 49 49 H 1.08997 * 109.47254 * 51.46554 * 18 16 11 50 50 H 1.08993 * 109.47235 * 171.46769 * 18 16 11 51 51 H 1.09000 * 109.46826 * 291.46854 * 18 16 11 52 52 H 1.08997 * 109.58754 * 294.84401 * 19 6 5 53 53 H 1.09008 * 109.69733 * 174.48933 * 19 6 5 54 54 H 0.96998 * 120.00022 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7292 -1.2455 5 6 3.5674 -0.8478 -1.1704 6 6 3.9569 -1.6657 0.0632 7 1 3.4983 -2.6528 0.0049 8 7 5.4142 -1.8060 0.1175 9 6 5.9671 -2.8475 0.7702 10 8 5.2582 -3.6688 1.3124 11 6 7.4661 -2.9915 0.8266 12 6 8.2528 -1.6810 0.8961 13 6 8.0939 -4.1520 0.0522 14 6 7.1518 -5.0773 -0.7207 15 6 9.4606 -3.9135 -0.5930 16 6 8.0322 -4.1962 1.5810 17 6 9.3419 -3.9984 2.3468 18 6 7.0331 -5.1621 2.2211 19 6 3.4651 -0.9470 1.3235 20 7 2.0226 -0.6996 1.1944 21 6 1.1532 -1.1182 2.1660 22 1 0.1453 -1.4029 1.9025 23 6 1.5674 -1.1765 3.4896 24 7 2.6954 -0.6034 3.8521 25 14 0.5237 -2.0684 4.7564 26 1 -0.6866 -2.6233 4.0986 27 1 1.3116 -3.1749 5.3564 28 1 0.1166 -1.1167 5.8210 29 1 -0.3633 0.5083 0.8932 30 1 -0.3634 0.5194 -0.8867 31 1 -0.3633 -1.0276 -0.0063 32 1 1.7659 -0.1667 -2.1369 33 1 1.6029 -1.7252 -1.2921 34 1 4.0061 0.1475 -1.0995 35 1 3.9377 -1.3447 -2.0671 36 1 5.9811 -1.1494 -0.3164 37 1 8.3304 -1.3586 1.9345 38 1 9.2516 -1.8347 0.4877 39 1 7.7366 -0.9162 0.3159 40 1 6.6233 -4.5039 -1.4823 41 1 7.7301 -5.8685 -1.1977 42 1 6.4307 -5.5186 -0.0327 43 1 10.2156 -3.8036 0.1854 44 1 9.7151 -4.7614 -1.2289 45 1 9.4246 -3.0057 -1.1952 46 1 9.1481 -3.4326 3.2580 47 1 9.7621 -4.9704 2.6050 48 1 10.0486 -3.4513 1.7227 49 1 6.2948 -5.4657 1.4789 50 1 7.5620 -6.0415 2.5882 51 1 6.5306 -4.6671 3.0521 52 1 3.9904 0.0020 1.4315 53 1 3.6522 -1.5698 2.1983 54 1 2.9846 -0.6439 4.7771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072117151.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:04 Heat of formation + Delta-G solvation = -17.165161 kcal Electronic energy + Delta-G solvation = -30028.465105 eV Core-core repulsion = 26386.585275 eV Total energy + Delta-G solvation = -3641.879831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.96073 -39.97728 -38.57635 -35.99469 -34.68658 -32.70165 -32.00063 -31.79296 -31.04094 -29.73680 -27.73211 -26.99107 -26.77707 -26.58135 -24.12789 -23.28767 -21.85838 -21.12382 -19.79786 -18.76848 -18.32459 -17.49863 -17.23762 -16.72786 -16.46195 -15.88525 -15.68661 -15.47402 -15.20594 -15.05607 -14.94494 -14.71383 -14.34990 -14.08207 -13.99959 -13.59961 -13.54147 -13.34422 -13.21431 -13.09463 -12.92308 -12.78439 -12.73611 -12.72188 -12.62768 -12.59741 -12.55002 -12.43115 -12.30354 -12.10729 -11.97264 -11.66873 -11.42261 -11.34400 -11.15026 -10.65152 -10.57516 -10.43481 -10.10734 -9.97041 -8.61286 -7.86597 -5.35506 1.37317 1.41436 1.49639 1.61802 2.24349 2.48352 2.71218 3.30053 3.53545 3.59819 3.65504 3.75767 3.93837 4.05552 4.07852 4.17402 4.20365 4.25311 4.38253 4.49690 4.61079 4.64622 4.69617 4.73395 4.75896 4.79107 4.81758 4.85551 4.87989 4.89110 4.96124 4.99144 5.03893 5.04686 5.05650 5.11095 5.12885 5.17078 5.19609 5.29092 5.31518 5.34031 5.39411 5.47359 5.53334 5.55275 5.60582 5.68493 5.73994 5.82557 6.40825 6.71942 7.14814 7.45238 7.88446 8.38203 9.18203 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.004299 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.562021 B = 6510.928971 C = 7726.505188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.154 3.846 3 H 0.021 0.979 4 C -0.117 4.117 5 C -0.107 4.107 6 C 0.135 3.865 7 H 0.047 0.953 8 N -0.709 5.709 9 C 0.539 3.461 10 O -0.576 6.576 11 C -0.165 4.165 12 C -0.112 4.112 13 C -0.073 4.073 14 C -0.131 4.131 15 C -0.120 4.120 16 C -0.096 4.096 17 C -0.115 4.115 18 C -0.110 4.110 19 C 0.183 3.817 20 N -0.604 5.604 21 C -0.250 4.250 22 H 0.073 0.927 23 C -0.052 4.052 24 N -0.934 5.934 25 Si 0.956 3.044 26 H -0.262 1.262 27 H -0.302 1.302 28 H -0.287 1.287 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.407 0.593 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.049 0.951 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.051 0.949 47 H 0.074 0.926 48 H 0.088 0.912 49 H 0.063 0.937 50 H 0.062 0.938 51 H 0.025 0.975 52 H -0.006 1.006 53 H 0.041 0.959 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.325 -3.392 -13.839 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 H 0.039 0.961 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.028 3.972 7 H 0.065 0.935 8 N -0.361 5.361 9 C 0.327 3.673 10 O -0.455 6.455 11 C -0.169 4.169 12 C -0.169 4.169 13 C -0.073 4.073 14 C -0.187 4.187 15 C -0.177 4.177 16 C -0.097 4.097 17 C -0.172 4.172 18 C -0.166 4.166 19 C 0.056 3.944 20 N -0.328 5.328 21 C -0.380 4.380 22 H 0.091 0.909 23 C -0.247 4.247 24 N -0.581 5.581 25 Si 0.785 3.215 26 H -0.186 1.186 27 H -0.229 1.229 28 H -0.213 1.213 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.244 0.756 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.070 0.930 47 H 0.093 0.907 48 H 0.107 0.893 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.044 0.956 52 H 0.012 0.988 53 H 0.059 0.941 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.831 -3.938 -13.320 20.320 hybrid contribution -0.801 -0.018 1.488 1.690 sum 14.030 -3.955 -11.832 18.774 Atomic orbital electron populations 1.21727 0.94715 1.01093 1.01079 1.20802 0.94300 0.93335 0.86711 0.96098 1.21950 0.94560 1.00798 0.98377 1.21638 0.97084 0.99874 0.95899 1.21443 0.79566 0.98720 0.97455 0.93505 1.45927 1.07249 1.27458 1.55449 1.20157 0.89895 0.80433 0.76844 1.90699 1.64711 1.43743 1.46386 1.21866 0.89976 0.94519 1.10499 1.21397 1.00621 0.92553 1.02353 1.21865 0.97779 0.95332 0.92347 1.21582 0.98779 0.99021 0.99363 1.21595 0.91951 1.03132 1.00998 1.21861 0.97747 0.96115 0.93935 1.21446 0.93522 1.02837 0.99376 1.21391 0.97591 0.97560 1.00097 1.20729 0.83666 0.95003 0.94982 1.44314 1.02513 1.65535 1.20430 1.19499 0.95896 1.36105 0.86507 0.90905 1.25841 0.98914 1.00841 0.99147 1.70155 1.24723 1.47064 1.16119 0.85358 0.78732 0.77818 0.79593 1.18578 1.22929 1.21344 0.94311 0.90217 0.93643 0.88588 0.93070 0.91031 0.89845 0.75576 0.92727 0.88259 0.91600 0.93018 0.89736 0.93220 0.89993 0.90553 0.90629 0.93017 0.90734 0.89310 0.91872 0.91873 0.95587 0.98848 0.94081 0.94737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 7.96 71.98 0.57 -4.17 16 2 C 0.15 6.27 3.50 44.98 0.16 6.42 16 3 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.12 -3.77 5.37 30.67 0.16 -3.60 16 5 C -0.11 -3.29 5.35 30.62 0.16 -3.13 16 6 C 0.13 5.44 2.60 45.07 0.12 5.56 16 7 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 8 N -0.71 -24.22 4.98 -442.16 -2.20 -26.42 16 9 C 0.54 19.98 6.41 87.65 0.56 20.55 16 10 O -0.58 -27.06 12.42 -3.05 -0.04 -27.09 16 11 C -0.17 -4.47 2.61 -52.93 -0.14 -4.61 16 12 C -0.11 -2.32 8.50 71.98 0.61 -1.71 16 13 C -0.07 -1.57 2.70 -52.15 -0.14 -1.71 16 14 C -0.13 -3.11 8.68 71.98 0.62 -2.49 16 15 C -0.12 -1.60 8.27 71.99 0.60 -1.01 16 16 C -0.10 -2.48 2.70 -52.16 -0.14 -2.62 16 17 C -0.12 -2.20 8.58 71.98 0.62 -1.58 16 18 C -0.11 -3.54 7.84 71.98 0.56 -2.97 16 19 C 0.18 9.49 4.85 86.36 0.42 9.91 16 20 N -0.60 -31.42 2.98 -675.23 -2.01 -33.43 16 21 C -0.25 -14.33 8.55 84.03 0.72 -13.61 16 22 H 0.07 4.04 6.26 -2.91 -0.02 4.02 16 23 C -0.05 -3.14 5.00 84.86 0.42 -2.71 16 24 N -0.93 -59.37 11.13 21.65 0.24 -59.12 16 25 Si 0.96 48.58 29.57 68.60 2.03 50.61 16 26 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 27 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 28 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 29 H 0.04 1.57 7.64 -2.39 -0.02 1.56 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.04 1.72 7.42 -2.39 -0.02 1.70 16 32 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.05 1.75 8.14 -2.38 -0.02 1.74 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.41 10.84 6.91 -92.71 -0.64 10.20 16 37 H 0.05 1.25 8.14 -2.38 -0.02 1.24 16 38 H 0.10 1.40 5.47 -2.39 -0.01 1.38 16 39 H 0.07 1.27 6.39 -2.39 -0.02 1.25 16 40 H 0.05 1.26 8.14 -2.38 -0.02 1.25 16 41 H 0.08 1.55 7.89 -2.39 -0.02 1.53 16 42 H 0.05 1.49 4.81 -2.39 -0.01 1.48 16 43 H 0.08 0.90 5.11 -2.39 -0.01 0.88 16 44 H 0.08 0.85 7.83 -2.39 -0.02 0.83 16 45 H 0.07 0.86 7.55 -2.39 -0.02 0.84 16 46 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.09 1.24 4.79 -2.39 -0.01 1.23 16 49 H 0.06 2.27 3.88 -2.39 -0.01 2.26 16 50 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.03 1.00 7.75 -2.39 -0.02 0.98 16 52 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 53 H 0.04 2.57 6.12 -2.38 -0.01 2.55 16 54 H 0.24 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -76.89 391.31 4.15 -72.74 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.24 Total: 26.21 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 5.89 Total: -3.48 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -3.98 Total: -118.98 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.04 Total: -27.09 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.61 kcal Total: -76.89 4.15 -72.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072117151.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.571 kcal (2) G-P(sol) polarization free energy of solvation -76.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds