Wall clock time and date at job start Tue Mar 31 2020 15:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.70336 * 2 1 4 4 C 1.53190 * 109.59117 * 239.63839 * 2 1 3 5 5 C 1.53037 * 109.31644 * 185.57620 * 4 2 1 6 6 C 1.53039 * 109.53255 * 61.36609 * 5 4 2 7 7 H 1.09001 * 109.49472 * 178.67793 * 6 5 4 8 8 N 1.46500 * 109.49829 * 58.62182 * 6 5 4 9 9 C 1.34783 * 120.00140 * 154.99778 * 8 6 5 10 10 O 1.21277 * 119.99844 * 359.97438 * 9 8 6 11 11 C 1.50696 * 119.99763 * 180.02562 * 9 8 6 12 12 C 1.52996 * 115.55326 * 34.32837 * 11 9 8 13 13 C 1.53005 * 117.49857 * 248.61840 * 11 9 8 14 14 C 1.53003 * 117.49501 * 0.02562 * 13 11 9 15 15 C 1.52999 * 117.50184 * 145.02030 * 13 11 9 16 16 C 1.52998 * 59.99996 * 252.51464 * 13 11 9 17 17 C 1.53003 * 117.49592 * 252.50912 * 16 13 11 18 18 C 1.52997 * 117.52068 * 107.48137 * 16 13 11 19 19 C 1.53625 * 109.24623 * 298.51144 * 6 5 4 20 20 N 1.46925 * 108.54098 * 54.85722 * 19 6 5 21 21 C 1.36932 * 120.63046 * 126.37162 * 20 19 6 22 22 H 1.08004 * 120.00265 * 211.36415 * 21 20 19 23 23 C 1.38811 * 120.00066 * 31.08290 * 21 20 19 24 24 N 1.31628 * 120.00093 * 15.25281 * 23 21 20 25 25 Si 1.86797 * 120.00419 * 195.24654 * 23 21 20 26 26 H 1.48500 * 109.47048 * 60.00134 * 25 23 21 27 27 H 1.48497 * 109.47489 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47263 * 300.00563 * 25 23 21 29 29 H 1.08995 * 109.47303 * 299.64929 * 1 2 3 30 30 H 1.09001 * 109.46807 * 59.64985 * 1 2 3 31 31 H 1.08993 * 109.46851 * 179.64541 * 1 2 3 32 32 H 1.08993 * 109.49954 * 305.53650 * 4 2 1 33 33 H 1.09010 * 109.49377 * 65.62478 * 4 2 1 34 34 H 1.08996 * 109.46291 * 181.38684 * 5 4 2 35 35 H 1.09000 * 109.46324 * 301.36609 * 5 4 2 36 36 H 0.97004 * 120.00190 * 334.99746 * 8 6 5 37 37 H 1.08998 * 109.47544 * 85.58481 * 12 11 9 38 38 H 1.09001 * 109.47374 * 205.58564 * 12 11 9 39 39 H 1.09002 * 109.47043 * 325.58287 * 12 11 9 40 40 H 1.08996 * 109.47670 * 69.16245 * 14 13 11 41 41 H 1.09003 * 109.46695 * 189.16639 * 14 13 11 42 42 H 1.09008 * 109.46803 * 309.15394 * 14 13 11 43 43 H 1.08998 * 109.46928 * 66.68717 * 15 13 11 44 44 H 1.08990 * 109.47327 * 186.68987 * 15 13 11 45 45 H 1.09002 * 109.47120 * 306.69579 * 15 13 11 46 46 H 1.08997 * 109.46961 * 140.44057 * 17 16 13 47 47 H 1.09002 * 109.46987 * 260.44197 * 17 16 13 48 48 H 1.09002 * 109.47153 * 20.43935 * 17 16 13 49 49 H 1.09000 * 109.46979 * 344.33513 * 18 16 13 50 50 H 1.09009 * 109.47043 * 104.33303 * 18 16 13 51 51 H 1.09000 * 109.47123 * 224.33364 * 18 16 13 52 52 H 1.09001 * 109.73437 * 295.11980 * 19 6 5 53 53 H 1.08995 * 109.66616 * 174.55238 * 19 6 5 54 54 H 0.96996 * 119.99948 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0437 -0.7295 -1.2453 5 6 3.5676 -0.8480 -1.1700 6 6 3.9569 -1.6656 0.0637 7 1 5.0412 -1.7696 0.1039 8 7 3.3412 -2.9926 -0.0149 9 6 3.8980 -4.0335 0.6356 10 8 4.9090 -3.8717 1.2856 11 6 3.2649 -5.3986 0.5543 12 6 2.5979 -5.7383 -0.7801 13 6 2.6253 -5.9577 1.8268 14 6 2.6770 -5.0877 3.0843 15 6 1.3672 -6.8137 1.6679 16 6 3.9447 -6.5390 1.3148 17 6 3.9050 -7.9319 0.6829 18 6 5.2155 -6.2062 2.0991 19 6 3.4656 -0.9419 1.3266 20 7 2.0225 -0.6995 1.1946 21 6 1.1537 -1.1125 2.1690 22 1 0.1483 -1.4073 1.9066 23 6 1.5668 -1.1579 3.4934 24 7 2.6658 -0.5341 3.8618 25 14 0.5631 -2.1039 4.7531 26 1 0.4851 -3.5318 4.3526 27 1 1.2123 -1.9976 6.0844 28 1 -0.8065 -1.5342 4.8238 29 1 -0.3634 0.5083 0.8931 30 1 -0.3633 0.5193 -0.8869 31 1 -0.3633 -1.0276 -0.0064 32 1 1.6031 -1.7253 -1.2912 33 1 1.7661 -0.1669 -2.1368 34 1 3.9380 -1.3449 -2.0666 35 1 4.0063 0.1473 -1.0989 36 1 2.5328 -3.1222 -0.5351 37 1 3.3435 -6.1373 -1.4679 38 1 1.8184 -6.4826 -0.6176 39 1 2.1567 -4.8370 -1.2055 40 1 2.0308 -4.2199 2.9527 41 1 2.3360 -5.6680 3.9418 42 1 3.7012 -4.7557 3.2546 43 1 1.6215 -7.7418 1.1559 44 1 0.9564 -7.0420 2.6512 45 1 0.6274 -6.2671 1.0830 46 1 4.5675 -7.9574 -0.1823 47 1 4.2326 -8.6717 1.4134 48 1 2.8866 -8.1589 0.3676 49 1 5.0215 -5.3659 2.7656 50 1 5.5176 -7.0735 2.6863 51 1 6.0127 -5.9423 1.4042 52 1 3.9878 0.0091 1.4324 53 1 3.6532 -1.5635 2.2020 54 1 2.9543 -0.5655 4.7873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072117152.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:08 Heat of formation + Delta-G solvation = -12.119802 kcal Electronic energy + Delta-G solvation = -31241.502096 eV Core-core repulsion = 27599.841049 eV Total energy + Delta-G solvation = -3641.661048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.92242 -40.05485 -38.41102 -35.74489 -34.49445 -32.68397 -31.99363 -31.75589 -30.94233 -29.71233 -27.80389 -26.97307 -26.76244 -26.56837 -23.96819 -23.48688 -22.01603 -20.34164 -20.06316 -18.73973 -18.14725 -17.48958 -17.06575 -16.76603 -16.26039 -15.83350 -15.68657 -15.52152 -15.22251 -14.95067 -14.93070 -14.61301 -14.20397 -14.03883 -13.97858 -13.60626 -13.56252 -13.37386 -13.22093 -13.01793 -12.93023 -12.84279 -12.70712 -12.66364 -12.59973 -12.58441 -12.43031 -12.41828 -12.28071 -12.13155 -12.08192 -11.57957 -11.35910 -11.19065 -11.04895 -10.58904 -10.49914 -10.39636 -10.06400 -9.79351 -8.52226 -7.80139 -5.26542 1.39208 1.42856 1.46890 1.71595 2.37492 2.50946 2.81880 3.36130 3.57734 3.65238 3.69694 3.73188 4.01098 4.08222 4.11083 4.15598 4.20059 4.23924 4.49544 4.51790 4.62442 4.65927 4.73251 4.74726 4.80381 4.83020 4.85370 4.88260 4.89479 4.95202 4.97197 5.04634 5.05742 5.07714 5.10485 5.10969 5.12844 5.16608 5.20839 5.27052 5.32548 5.34101 5.43536 5.47510 5.57516 5.61976 5.71883 5.74601 5.75761 5.85037 6.46578 6.82765 7.21240 7.54069 7.94969 8.47435 9.24647 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011324 B = 0.006428 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.065189 B = 4355.124066 C = 5459.009976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.153 3.847 3 H 0.011 0.989 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.129 3.871 7 H 0.059 0.941 8 N -0.690 5.690 9 C 0.541 3.459 10 O -0.582 6.582 11 C -0.157 4.157 12 C -0.109 4.109 13 C -0.092 4.092 14 C -0.128 4.128 15 C -0.118 4.118 16 C -0.083 4.083 17 C -0.113 4.113 18 C -0.108 4.108 19 C 0.177 3.823 20 N -0.590 5.590 21 C -0.232 4.232 22 H 0.071 0.929 23 C -0.044 4.044 24 N -0.935 5.935 25 Si 0.935 3.065 26 H -0.264 1.264 27 H -0.308 1.308 28 H -0.277 1.277 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.403 0.597 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.037 0.963 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.095 0.905 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.048 0.952 50 H 0.060 0.940 51 H 0.047 0.953 52 H -0.009 1.009 53 H 0.043 0.957 54 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.229 -13.075 -13.689 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 H 0.028 0.972 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.022 3.978 7 H 0.077 0.923 8 N -0.341 5.341 9 C 0.329 3.671 10 O -0.463 6.463 11 C -0.160 4.160 12 C -0.166 4.166 13 C -0.093 4.093 14 C -0.185 4.185 15 C -0.175 4.175 16 C -0.084 4.084 17 C -0.169 4.169 18 C -0.165 4.165 19 C 0.050 3.950 20 N -0.314 5.314 21 C -0.363 4.363 22 H 0.089 0.911 23 C -0.239 4.239 24 N -0.582 5.582 25 Si 0.764 3.236 26 H -0.190 1.190 27 H -0.235 1.235 28 H -0.204 1.204 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.240 0.760 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.113 0.887 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.103 0.897 49 H 0.066 0.934 50 H 0.079 0.921 51 H 0.066 0.934 52 H 0.009 0.991 53 H 0.062 0.938 54 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.486 -12.911 -13.105 18.457 hybrid contribution -0.256 0.592 1.638 1.761 sum -1.742 -12.319 -11.467 16.920 Atomic orbital electron populations 1.21699 0.94660 1.01318 1.00685 1.20769 0.94172 0.93070 0.87191 0.97174 1.21936 0.94612 1.00969 0.98080 1.21649 0.97359 0.99732 0.96059 1.21480 0.95975 0.82911 0.97418 0.92324 1.45742 1.29462 1.07568 1.51337 1.19980 0.83405 0.86049 0.77662 1.90633 1.27329 1.85786 1.42543 1.21861 1.05696 0.91575 0.96858 1.21385 1.00701 1.02563 0.91968 1.21713 0.96001 0.99742 0.91852 1.21530 1.01464 0.98667 0.96790 1.21543 0.93840 0.99322 1.02748 1.21867 0.92898 0.94194 0.99402 1.21464 1.03506 0.91335 1.00626 1.21382 0.95502 1.00291 0.99284 1.20857 0.84272 0.94766 0.95087 1.44186 1.02009 1.65421 1.19798 1.19238 0.95890 1.35158 0.85981 0.91149 1.25656 0.98757 1.00700 0.98824 1.70156 1.26744 1.45482 1.15821 0.85872 0.78525 0.80483 0.78699 1.18996 1.23510 1.20351 0.94790 0.90690 0.92952 0.91936 0.89268 0.89799 0.91218 0.75974 0.90612 0.89221 0.92048 0.94397 0.91983 0.93239 0.88667 0.92092 0.91481 0.91299 0.91037 0.89715 0.93368 0.92073 0.93440 0.99140 0.93801 0.95063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 7.96 71.98 0.57 -3.72 16 2 C 0.15 5.83 3.49 44.98 0.16 5.99 16 3 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 4 C -0.12 -3.34 5.21 30.67 0.16 -3.18 16 5 C -0.11 -3.27 5.58 30.62 0.17 -3.10 16 6 C 0.13 5.01 2.81 45.21 0.13 5.13 16 7 H 0.06 2.44 7.58 -2.39 -0.02 2.42 16 8 N -0.69 -24.65 4.82 -441.47 -2.13 -26.78 16 9 C 0.54 20.68 6.41 87.65 0.56 21.24 16 10 O -0.58 -26.77 12.24 -3.02 -0.04 -26.81 16 11 C -0.16 -4.61 2.61 -52.93 -0.14 -4.75 16 12 C -0.11 -2.23 8.54 71.98 0.62 -1.62 16 13 C -0.09 -2.76 2.70 -52.18 -0.14 -2.90 16 14 C -0.13 -5.01 8.66 71.98 0.62 -4.38 16 15 C -0.12 -2.61 8.25 71.98 0.59 -2.02 16 16 C -0.08 -2.26 2.70 -52.18 -0.14 -2.40 16 17 C -0.11 -2.04 8.62 71.98 0.62 -1.42 16 18 C -0.11 -3.48 7.86 71.98 0.57 -2.92 16 19 C 0.18 8.88 4.92 86.51 0.43 9.31 16 20 N -0.59 -28.26 2.89 -674.40 -1.95 -30.21 16 21 C -0.23 -12.30 8.51 84.03 0.72 -11.58 16 22 H 0.07 3.60 6.30 -2.91 -0.02 3.58 16 23 C -0.04 -2.52 4.93 84.86 0.42 -2.10 16 24 N -0.94 -58.02 11.31 21.65 0.25 -57.77 16 25 Si 0.93 46.11 29.01 68.60 1.99 48.10 16 26 H -0.26 -12.35 6.47 99.48 0.64 -11.71 16 27 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 28 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 29 H 0.03 1.32 7.64 -2.39 -0.02 1.30 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.76 7.43 -2.39 -0.02 1.74 16 32 H 0.06 1.71 6.40 -2.39 -0.02 1.70 16 33 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.40 12.55 5.07 -92.71 -0.47 12.08 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.45 5.54 -2.39 -0.01 1.43 16 39 H 0.06 1.22 6.38 -2.39 -0.02 1.21 16 40 H 0.04 1.74 6.89 -2.39 -0.02 1.72 16 41 H 0.06 2.20 8.05 -2.39 -0.02 2.18 16 42 H 0.05 2.19 4.62 -2.38 -0.01 2.17 16 43 H 0.09 1.52 4.98 -2.39 -0.01 1.51 16 44 H 0.06 1.36 7.95 -2.39 -0.02 1.34 16 45 H 0.07 1.43 7.65 -2.39 -0.02 1.42 16 46 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.08 1.20 4.77 -2.39 -0.01 1.19 16 49 H 0.05 1.92 4.04 -2.39 -0.01 1.91 16 50 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 51 H 0.05 1.61 7.68 -2.39 -0.02 1.59 16 52 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 53 H 0.04 2.63 6.24 -2.39 -0.01 2.61 16 54 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -71.24 385.68 4.38 -66.86 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.36 Total: 31.01 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 5.91 Total: -4.41 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -3.83 Total: -114.76 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.04 Total: -26.81 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.99 Total: 48.10 kcal Total: -71.24 4.38 -66.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072117152.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.736 kcal (2) G-P(sol) polarization free energy of solvation -71.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds