Wall clock time and date at job start Tue Mar 31 2020 15:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.58402 * 2 1 4 4 C 1.53191 * 109.58220 * 120.28056 * 2 1 3 5 5 C 1.53044 * 109.31058 * 174.42399 * 4 2 1 6 6 C 1.53049 * 109.53682 * 298.63472 * 5 4 2 7 7 H 1.08996 * 109.49466 * 181.35305 * 6 5 4 8 8 N 1.46505 * 109.49391 * 301.41089 * 6 5 4 9 9 C 1.34773 * 119.99751 * 204.99840 * 8 6 5 10 10 O 1.21278 * 120.00339 * 0.02562 * 9 8 6 11 11 C 1.50701 * 119.99770 * 180.02562 * 9 8 6 12 12 C 1.52995 * 115.55228 * 34.32782 * 11 9 8 13 13 C 1.53006 * 117.49518 * 248.62297 * 11 9 8 14 14 C 1.53000 * 117.49801 * 359.97438 * 13 11 9 15 15 C 1.52999 * 117.49770 * 145.02181 * 13 11 9 16 16 C 1.52994 * 117.49896 * 180.02562 * 11 9 8 17 17 C 1.53001 * 117.50195 * 214.97515 * 16 11 9 18 18 C 1.52999 * 117.50030 * 359.97438 * 16 11 9 19 19 C 1.53188 * 109.31078 * 61.36309 * 6 5 4 20 20 N 1.46922 * 109.58395 * 239.71021 * 2 1 3 21 21 C 1.36931 * 120.63446 * 6.61316 * 20 2 1 22 22 H 1.07998 * 119.99756 * 327.94110 * 21 20 2 23 23 C 1.38811 * 120.00264 * 147.94144 * 21 20 2 24 24 N 1.31613 * 120.00207 * 345.23211 * 23 21 20 25 25 Si 1.86799 * 120.00088 * 165.22740 * 23 21 20 26 26 H 1.48498 * 109.47216 * 59.99824 * 25 23 21 27 27 H 1.48500 * 109.47428 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47227 * 299.99886 * 25 23 21 29 29 H 1.08997 * 109.47035 * 300.00214 * 1 2 3 30 30 H 1.09002 * 109.47263 * 60.00288 * 1 2 3 31 31 H 1.09005 * 109.47218 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.50085 * 294.37034 * 4 2 1 33 33 H 1.08997 * 109.50289 * 54.47106 * 4 2 1 34 34 H 1.08999 * 109.46078 * 58.65172 * 5 4 2 35 35 H 1.09004 * 109.46007 * 178.62810 * 5 4 2 36 36 H 0.97005 * 120.00005 * 25.00083 * 8 6 5 37 37 H 1.09001 * 109.47052 * 85.58594 * 12 11 9 38 38 H 1.09005 * 109.47440 * 205.58787 * 12 11 9 39 39 H 1.09001 * 109.47234 * 325.58390 * 12 11 9 40 40 H 1.08996 * 109.47182 * 72.77695 * 14 13 11 41 41 H 1.09002 * 109.46596 * 192.77831 * 14 13 11 42 42 H 1.08996 * 109.47012 * 312.77782 * 14 13 11 43 43 H 1.08999 * 109.47585 * 48.43263 * 15 13 11 44 44 H 1.09000 * 109.47136 * 168.43133 * 15 13 11 45 45 H 1.09001 * 109.46903 * 288.42654 * 15 13 11 46 46 H 1.09005 * 109.46823 * 52.80094 * 17 16 11 47 47 H 1.09001 * 109.47415 * 172.79910 * 17 16 11 48 48 H 1.09000 * 109.47324 * 292.80427 * 17 16 11 49 49 H 1.08999 * 109.47296 * 63.83782 * 18 16 11 50 50 H 1.08996 * 109.47571 * 183.84142 * 18 16 11 51 51 H 1.09001 * 109.47024 * 303.83834 * 18 16 11 52 52 H 1.09000 * 109.58744 * 65.15412 * 19 6 5 53 53 H 1.09001 * 109.58240 * 185.43686 * 19 6 5 54 54 H 0.97002 * 120.00373 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5675 -0.8465 1.1713 6 6 3.9569 -1.6658 -0.0613 7 1 5.0411 -1.7703 -0.1009 8 7 3.3405 -2.9925 0.0188 9 6 3.8971 -4.0344 -0.6302 10 8 4.9083 -3.8738 -1.2801 11 6 3.2627 -5.3989 -0.5483 12 6 1.7347 -5.4127 -0.4714 13 6 4.0190 -6.4845 0.2201 14 6 5.3617 -6.1018 0.8459 15 6 3.1895 -7.5012 1.0069 16 6 3.9425 -6.5406 -1.3065 17 6 3.0424 -7.6093 -1.9300 18 6 5.2140 -6.2096 -2.0904 19 6 3.4651 -0.9487 -1.3224 20 7 2.0225 -0.6982 -1.1953 21 6 1.1537 -1.1104 -2.1701 22 1 0.1506 -1.4120 -1.9070 23 6 1.5622 -1.1407 -3.4964 24 7 2.6594 -0.5121 -3.8616 25 14 0.5549 -2.0737 -4.7629 26 1 -0.8154 -1.5045 -4.8225 27 1 1.2000 -1.9530 -6.0950 28 1 0.4796 -3.5060 -4.3780 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7660 -0.1640 2.1371 33 1 1.6029 -1.7236 1.2937 34 1 4.0061 0.1488 1.0992 35 1 3.9377 -1.3424 2.0686 36 1 2.5318 -3.1210 0.5389 37 1 1.3199 -5.3746 -1.4786 38 1 1.4040 -6.3260 0.0235 39 1 1.3916 -4.5475 0.0959 40 1 5.1899 -5.4640 1.7129 41 1 5.8878 -7.0043 1.1572 42 1 5.9640 -5.5646 0.1133 43 1 2.3930 -7.8895 0.3721 44 1 3.8304 -8.3221 1.3285 45 1 2.7541 -7.0165 1.8807 46 1 2.2883 -7.1299 -2.5543 47 1 3.6455 -8.2815 -2.5403 48 1 2.5520 -8.1776 -1.1397 49 1 5.9942 -5.8903 -1.3994 50 1 5.5481 -7.0948 -2.6316 51 1 5.0057 -5.4078 -2.7988 52 1 3.9903 0.0001 -1.4316 53 1 3.6541 -1.5736 -2.1953 54 1 2.9447 -0.5329 -4.7884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072117153.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:12 Heat of formation + Delta-G solvation = -13.591052 kcal Electronic energy + Delta-G solvation = -30880.872926 eV Core-core repulsion = 27239.148081 eV Total energy + Delta-G solvation = -3641.724846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.93412 -40.08183 -38.41112 -35.75287 -34.50514 -32.69631 -31.98219 -31.77998 -30.96241 -29.71441 -27.82658 -26.96415 -26.75579 -26.60211 -23.98128 -23.49684 -22.01842 -20.35152 -20.06935 -18.73005 -18.17491 -17.53489 -17.03142 -16.58272 -16.47809 -15.89293 -15.66649 -15.49840 -15.19940 -15.00768 -14.90883 -14.64795 -14.23940 -14.05200 -13.98802 -13.66739 -13.46909 -13.31199 -13.21033 -12.96782 -12.90716 -12.82520 -12.71679 -12.61508 -12.59608 -12.57141 -12.55765 -12.44441 -12.41997 -12.14558 -12.08348 -11.58561 -11.33680 -11.20859 -11.05452 -10.68069 -10.52833 -10.41951 -10.03520 -9.81163 -8.52978 -7.82231 -5.29731 1.38175 1.41908 1.46332 1.70864 2.41785 2.49422 2.73900 3.33865 3.55512 3.63760 3.69301 3.72588 4.00202 4.10064 4.11058 4.18067 4.18917 4.21215 4.49946 4.50283 4.63749 4.67119 4.72191 4.73549 4.76807 4.81292 4.83626 4.88199 4.93299 4.95112 4.97380 5.03745 5.04751 5.05948 5.09499 5.10535 5.12714 5.13172 5.25766 5.26575 5.32303 5.33914 5.40391 5.47951 5.57383 5.60395 5.70909 5.72437 5.72904 5.83399 6.45267 6.81714 7.19409 7.53061 7.92988 8.45863 9.22833 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.005709 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.472216 B = 4903.213249 C = 5957.776818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 H 0.011 0.989 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.130 3.870 7 H 0.060 0.940 8 N -0.691 5.691 9 C 0.542 3.458 10 O -0.582 6.582 11 C -0.166 4.166 12 C -0.108 4.108 13 C -0.071 4.071 14 C -0.129 4.129 15 C -0.119 4.119 16 C -0.099 4.099 17 C -0.119 4.119 18 C -0.105 4.105 19 C 0.178 3.822 20 N -0.591 5.591 21 C -0.234 4.234 22 H 0.073 0.927 23 C -0.052 4.052 24 N -0.937 5.937 25 Si 0.947 3.053 26 H -0.269 1.269 27 H -0.305 1.305 28 H -0.281 1.281 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.403 0.597 37 H 0.042 0.958 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.047 0.953 47 H 0.069 0.931 48 H 0.092 0.908 49 H 0.063 0.937 50 H 0.061 0.939 51 H 0.028 0.972 52 H -0.008 1.008 53 H 0.038 0.962 54 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 -13.311 15.373 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 H 0.029 0.971 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.024 3.976 7 H 0.078 0.922 8 N -0.342 5.342 9 C 0.330 3.670 10 O -0.463 6.463 11 C -0.169 4.169 12 C -0.165 4.165 13 C -0.072 4.072 14 C -0.185 4.185 15 C -0.175 4.175 16 C -0.100 4.100 17 C -0.176 4.176 18 C -0.162 4.162 19 C 0.050 3.950 20 N -0.315 5.315 21 C -0.365 4.365 22 H 0.091 0.909 23 C -0.247 4.247 24 N -0.584 5.584 25 Si 0.776 3.224 26 H -0.195 1.195 27 H -0.232 1.232 28 H -0.208 1.208 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.240 0.760 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.066 0.934 47 H 0.088 0.912 48 H 0.110 0.890 49 H 0.081 0.919 50 H 0.079 0.921 51 H 0.047 0.953 52 H 0.009 0.991 53 H 0.057 0.943 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.280 -13.133 14.777 19.772 hybrid contribution -0.335 0.475 -1.703 1.799 sum -0.615 -12.658 13.075 18.208 Atomic orbital electron populations 1.21708 0.94620 1.01352 1.00727 1.20768 0.94224 0.93108 0.87070 0.97125 1.21940 0.94625 1.00971 0.98088 1.21653 0.97366 0.99734 0.96031 1.21403 0.96038 0.82865 0.97333 0.92206 1.45757 1.29670 1.07607 1.51148 1.19952 0.83399 0.85949 0.77678 1.90633 1.27467 1.85717 1.42458 1.21810 0.96306 0.88292 1.10533 1.21326 0.89876 1.03616 1.01729 1.21869 0.96665 0.96214 0.92445 1.21517 0.94765 1.02129 1.00135 1.21529 0.99509 0.97050 0.99450 1.21827 0.97678 0.96560 0.93920 1.21538 0.98416 0.96452 1.01185 1.21392 0.95899 0.99449 0.99428 1.20753 0.84422 0.94795 0.94981 1.44163 1.02059 1.65459 1.19788 1.19281 0.96204 1.35103 0.85868 0.90917 1.25788 0.98978 1.00715 0.99189 1.70154 1.26927 1.45380 1.15890 0.85639 0.78851 0.79265 0.78603 1.19476 1.23185 1.20771 0.90637 0.94759 0.92926 0.89186 0.91961 0.91147 0.89786 0.75993 0.93843 0.88405 0.92158 0.92221 0.89889 0.93128 0.90388 0.90152 0.90817 0.93409 0.91167 0.89004 0.91867 0.92056 0.95279 0.99053 0.94297 0.94968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 7.97 71.98 0.57 -3.73 16 2 C 0.15 5.87 3.49 44.98 0.16 6.02 16 3 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 4 C -0.12 -3.36 5.21 30.67 0.16 -3.20 16 5 C -0.11 -3.27 5.59 30.63 0.17 -3.10 16 6 C 0.13 5.08 2.81 45.07 0.13 5.21 16 7 H 0.06 2.49 7.58 -2.39 -0.02 2.47 16 8 N -0.69 -24.88 4.82 -442.16 -2.13 -27.01 16 9 C 0.54 20.92 6.40 87.66 0.56 21.49 16 10 O -0.58 -26.90 12.04 -3.02 -0.04 -26.94 16 11 C -0.17 -5.00 2.62 -52.93 -0.14 -5.14 16 12 C -0.11 -2.87 8.62 71.98 0.62 -2.25 16 13 C -0.07 -1.65 2.70 -52.19 -0.14 -1.79 16 14 C -0.13 -3.05 8.64 71.98 0.62 -2.43 16 15 C -0.12 -1.81 8.23 71.98 0.59 -1.22 16 16 C -0.10 -2.78 2.70 -52.20 -0.14 -2.92 16 17 C -0.12 -2.67 8.85 71.98 0.64 -2.03 16 18 C -0.11 -3.45 7.98 71.98 0.57 -2.87 16 19 C 0.18 8.98 4.86 86.35 0.42 9.39 16 20 N -0.59 -28.54 2.90 -675.16 -1.96 -30.50 16 21 C -0.23 -12.53 8.50 84.03 0.71 -11.81 16 22 H 0.07 3.72 6.31 -2.91 -0.02 3.71 16 23 C -0.05 -2.99 4.94 84.86 0.42 -2.57 16 24 N -0.94 -58.90 11.37 21.65 0.25 -58.65 16 25 Si 0.95 47.03 29.58 68.60 2.03 49.06 16 26 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 27 H -0.30 -15.69 7.11 99.48 0.71 -14.99 16 28 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 30 H 0.03 1.33 7.66 -2.39 -0.02 1.31 16 31 H 0.05 1.76 7.41 -2.38 -0.02 1.75 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 1.71 6.40 -2.39 -0.02 1.70 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.40 12.69 5.07 -92.70 -0.47 12.22 16 37 H 0.04 1.33 7.77 -2.39 -0.02 1.32 16 38 H 0.10 1.87 5.73 -2.38 -0.01 1.85 16 39 H 0.06 1.58 6.38 -2.39 -0.02 1.57 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.05 1.52 4.50 -2.39 -0.01 1.51 16 43 H 0.08 1.06 4.32 -2.39 -0.01 1.05 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.05 1.20 7.66 -2.38 -0.02 1.18 16 47 H 0.07 1.41 7.78 -2.39 -0.02 1.40 16 48 H 0.09 1.53 5.14 -2.39 -0.01 1.52 16 49 H 0.06 2.13 4.63 -2.39 -0.01 2.12 16 50 H 0.06 1.68 7.80 -2.39 -0.02 1.66 16 51 H 0.03 1.18 7.00 -2.39 -0.02 1.16 16 52 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 53 H 0.04 2.36 6.33 -2.39 -0.02 2.35 16 54 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -72.35 387.34 4.50 -67.85 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.42 Total: 29.14 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 5.93 Total: -2.96 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -3.84 Total: -116.16 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.04 Total: -26.94 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -72.35 4.50 -67.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072117153.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.260 kcal (2) G-P(sol) polarization free energy of solvation -72.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds