Wall clock time and date at job start Tue Mar 31 2020 15:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.70376 * 2 1 4 4 C 1.53194 * 109.58891 * 120.35804 * 2 1 3 5 5 C 1.53038 * 109.31728 * 174.42285 * 4 2 1 6 6 C 1.53037 * 109.53578 * 298.63346 * 5 4 2 7 7 H 1.09002 * 109.49964 * 301.38170 * 6 5 4 8 8 N 1.46500 * 109.49766 * 181.31388 * 6 5 4 9 9 C 1.34780 * 120.00050 * 155.00079 * 8 6 5 10 10 O 1.21281 * 120.00095 * 359.97438 * 9 8 6 11 11 C 1.50707 * 119.99831 * 180.02562 * 9 8 6 12 12 C 1.52998 * 115.56159 * 41.02171 * 11 9 8 13 13 C 1.52998 * 117.49423 * 186.70632 * 11 9 8 14 14 C 1.52992 * 117.50153 * 0.02562 * 13 11 9 15 15 C 1.53001 * 117.49606 * 214.99940 * 13 11 9 16 16 C 1.53006 * 60.03066 * 107.50230 * 13 11 9 17 17 C 1.52990 * 117.50081 * 107.47458 * 16 13 11 18 18 C 1.53003 * 117.49476 * 252.47446 * 16 13 11 19 19 C 1.53194 * 109.31217 * 61.36596 * 6 5 4 20 20 N 1.46927 * 109.58659 * 239.64688 * 2 1 3 21 21 C 1.36928 * 120.63416 * 6.62467 * 20 2 1 22 22 H 1.08000 * 120.00395 * 323.75692 * 21 20 2 23 23 C 1.38812 * 120.00114 * 143.74989 * 21 20 2 24 24 N 1.31619 * 120.00108 * 355.96519 * 23 21 20 25 25 Si 1.86803 * 120.00036 * 175.95999 * 23 21 20 26 26 H 1.48510 * 109.46983 * 60.00342 * 25 23 21 27 27 H 1.48498 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47469 * 300.00359 * 25 23 21 29 29 H 1.08993 * 109.47457 * 299.64469 * 1 2 3 30 30 H 1.09009 * 109.46949 * 59.64328 * 1 2 3 31 31 H 1.09004 * 109.47017 * 179.63928 * 1 2 3 32 32 H 1.09000 * 109.49350 * 54.46819 * 4 2 1 33 33 H 1.09001 * 109.52022 * 294.39496 * 4 2 1 34 34 H 1.08994 * 109.45915 * 178.61438 * 5 4 2 35 35 H 1.09006 * 109.44546 * 58.64718 * 5 4 2 36 36 H 0.96998 * 119.99639 * 335.00455 * 8 6 5 37 37 H 1.08996 * 109.46710 * 205.69262 * 12 11 9 38 38 H 1.09001 * 109.47115 * 325.68553 * 12 11 9 39 39 H 1.09000 * 109.47405 * 85.68659 * 12 11 9 40 40 H 1.08997 * 109.47099 * 281.23565 * 14 13 11 41 41 H 1.08997 * 109.47283 * 161.24017 * 14 13 11 42 42 H 1.09001 * 109.47666 * 41.23827 * 14 13 11 43 43 H 1.09005 * 109.46853 * 212.35012 * 15 13 11 44 44 H 1.08998 * 109.47359 * 332.35455 * 15 13 11 45 45 H 1.08994 * 109.46695 * 92.35577 * 15 13 11 46 46 H 1.09011 * 109.47079 * 116.68603 * 17 16 13 47 47 H 1.09001 * 109.47617 * 236.68435 * 17 16 13 48 48 H 1.09000 * 109.47260 * 356.68647 * 17 16 13 49 49 H 1.08995 * 109.47552 * 2.72468 * 18 16 13 50 50 H 1.08999 * 109.46806 * 122.72570 * 18 16 13 51 51 H 1.08998 * 109.47087 * 242.72226 * 18 16 13 52 52 H 1.09003 * 109.58985 * 65.15160 * 19 6 5 53 53 H 1.09003 * 109.58833 * 185.57345 * 19 6 5 54 54 H 0.97005 * 119.99662 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5675 -0.8480 1.1702 6 6 3.9569 -1.6657 -0.0634 7 1 3.4987 -2.6531 -0.0050 8 7 5.4142 -1.8053 -0.1175 9 6 5.9677 -2.8482 -0.7677 10 8 5.2592 -3.6713 -1.3076 11 6 7.4668 -2.9921 -0.8228 12 6 8.2092 -2.6684 0.4753 13 6 8.0377 -4.1043 -1.7047 14 6 7.0431 -4.9850 -2.4635 15 6 9.3072 -4.8081 -1.2208 16 6 8.1627 -2.6431 -2.1408 17 6 9.5473 -1.9974 -2.0591 18 6 7.2837 -2.1750 -3.3023 19 6 3.4651 -0.9469 -1.3237 20 7 2.0225 -0.6995 -1.1945 21 6 1.1538 -1.1126 -2.1690 22 1 0.1738 -1.4778 -1.8994 23 6 1.5327 -1.0620 -3.5034 24 7 2.6951 -0.5435 -3.8383 25 14 0.3927 -1.7300 -4.8240 26 1 -0.8940 -0.9894 -4.7881 27 1 1.0254 -1.5597 -6.1566 28 1 0.1406 -3.1725 -4.5771 29 1 -0.3634 0.5083 0.8931 30 1 -0.3633 0.5194 -0.8868 31 1 -0.3633 -1.0277 -0.0065 32 1 1.6030 -1.7253 1.2912 33 1 1.7659 -0.1674 2.1371 34 1 3.9377 -1.3449 2.0669 35 1 4.0059 0.1475 1.0993 36 1 5.9808 -1.1473 0.3147 37 1 9.2279 -2.3577 0.2433 38 1 7.6936 -1.8625 0.9975 39 1 8.2351 -3.5544 1.1097 40 1 6.6222 -5.7261 -1.7842 41 1 7.5563 -5.4915 -3.2809 42 1 6.2422 -4.3648 -2.8661 43 1 9.9058 -5.1093 -2.0805 44 1 9.8850 -4.1266 -0.5964 45 1 9.0351 -5.6899 -0.6407 46 1 9.8785 -1.7200 -3.0599 47 1 9.4964 -1.1063 -1.4333 48 1 10.2535 -2.7057 -1.6259 49 1 6.6384 -2.9930 -3.6223 50 1 6.6706 -1.3341 -2.9780 51 1 7.9159 -1.8642 -4.1341 52 1 3.9904 0.0021 -1.4316 53 1 3.6519 -1.5717 -2.1972 54 1 2.9600 -0.5085 -4.7709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072117154.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:16 Heat of formation + Delta-G solvation = -20.644686 kcal Electronic energy + Delta-G solvation = -30172.534618 eV Core-core repulsion = 26530.503903 eV Total energy + Delta-G solvation = -3642.030714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.95059 -39.95320 -38.57968 -35.98314 -34.66280 -32.65931 -32.01779 -31.80132 -31.05615 -29.66652 -27.71779 -27.02706 -26.76928 -26.54463 -24.09824 -23.28009 -21.85343 -21.12960 -19.80479 -18.76349 -18.32670 -17.44582 -17.21694 -16.83599 -16.30538 -15.86166 -15.64132 -15.46964 -15.19560 -15.09880 -14.89699 -14.67648 -14.31686 -14.10862 -13.93796 -13.61954 -13.51800 -13.31349 -13.20734 -13.05867 -12.90225 -12.77784 -12.74942 -12.71005 -12.69998 -12.62455 -12.55850 -12.41364 -12.37475 -12.12766 -11.98049 -11.65445 -11.50113 -11.35922 -11.15548 -10.61514 -10.55317 -10.40430 -10.09822 -9.95379 -8.51784 -7.84913 -5.41126 1.39018 1.42771 1.47537 1.63500 2.21699 2.48501 2.72386 3.31169 3.55221 3.61208 3.63859 3.78421 3.95110 4.04251 4.08250 4.15293 4.24018 4.27079 4.39839 4.54489 4.60824 4.62555 4.70789 4.73261 4.79278 4.81361 4.83755 4.87598 4.89467 4.91246 4.96496 5.00207 5.04181 5.05204 5.07300 5.10522 5.15758 5.17724 5.18928 5.25799 5.29753 5.36019 5.40461 5.47977 5.54572 5.56274 5.60098 5.69264 5.72623 5.84268 6.44963 6.72386 7.17745 7.45682 7.88387 8.41131 9.18510 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013406 B = 0.004505 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.073741 B = 6213.374104 C = 7501.393011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 H 0.020 0.980 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.132 3.868 7 H 0.046 0.954 8 N -0.708 5.708 9 C 0.539 3.461 10 O -0.576 6.576 11 C -0.158 4.158 12 C -0.110 4.110 13 C -0.087 4.087 14 C -0.115 4.115 15 C -0.111 4.111 16 C -0.087 4.087 17 C -0.115 4.115 18 C -0.125 4.125 19 C 0.188 3.812 20 N -0.604 5.604 21 C -0.255 4.255 22 H 0.067 0.933 23 C -0.046 4.046 24 N -0.930 5.930 25 Si 0.958 3.042 26 H -0.268 1.268 27 H -0.295 1.295 28 H -0.284 1.284 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.407 0.593 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.044 0.956 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.043 0.957 50 H 0.032 0.968 51 H 0.076 0.924 52 H -0.008 1.008 53 H 0.040 0.960 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.587 -1.976 11.622 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 H 0.038 0.962 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.026 3.974 7 H 0.064 0.936 8 N -0.360 5.360 9 C 0.327 3.673 10 O -0.456 6.456 11 C -0.162 4.162 12 C -0.167 4.167 13 C -0.088 4.088 14 C -0.172 4.172 15 C -0.167 4.167 16 C -0.088 4.088 17 C -0.172 4.172 18 C -0.182 4.182 19 C 0.061 3.939 20 N -0.328 5.328 21 C -0.386 4.386 22 H 0.084 0.916 23 C -0.242 4.242 24 N -0.575 5.575 25 Si 0.786 3.214 26 H -0.193 1.193 27 H -0.221 1.221 28 H -0.211 1.211 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.244 0.756 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.106 0.894 49 H 0.062 0.938 50 H 0.051 0.949 51 H 0.095 0.905 52 H 0.010 0.990 53 H 0.059 0.941 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.110 -2.516 11.096 18.915 hybrid contribution -0.987 -0.039 -1.356 1.678 sum 14.123 -2.555 9.740 17.345 Atomic orbital electron populations 1.21707 0.94762 1.01017 1.00976 1.20799 0.94257 0.93279 0.86761 0.96210 1.21953 0.94608 1.00749 0.98413 1.21636 0.97054 0.99866 0.95943 1.21488 0.79570 0.98698 0.97663 0.93616 1.45923 1.07247 1.27032 1.55758 1.20190 0.89950 0.80434 0.76768 1.90682 1.64782 1.43910 1.46180 1.21919 0.89773 1.08212 0.96255 1.21416 1.00774 1.02230 0.92261 1.21861 0.98089 0.89512 0.99292 1.21428 0.97794 0.98870 0.99069 1.21394 0.93502 1.00126 1.01716 1.21825 0.97398 0.97614 0.91958 1.21518 0.91517 1.00937 1.03184 1.21474 0.98871 1.00174 0.97701 1.20688 0.83736 0.94776 0.94673 1.44253 1.02465 1.65612 1.20504 1.19312 0.97933 1.35381 0.85965 0.91556 1.26011 0.98495 0.99930 0.99746 1.70115 1.22172 1.49149 1.16080 0.85495 0.79141 0.78215 0.78547 1.19315 1.22137 1.21061 0.90316 0.94360 0.93732 0.93156 0.88643 0.89815 0.91058 0.75600 0.88697 0.91392 0.91170 0.93723 0.92277 0.92972 0.90779 0.89683 0.91986 0.91374 0.90889 0.89450 0.93807 0.94876 0.90495 0.98982 0.94144 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 8.01 71.98 0.58 -4.16 16 2 C 0.15 6.34 3.50 44.97 0.16 6.50 16 3 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.12 -3.82 5.37 30.67 0.16 -3.66 16 5 C -0.11 -3.32 5.35 30.62 0.16 -3.15 16 6 C 0.13 5.36 2.61 45.07 0.12 5.48 16 7 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 8 N -0.71 -24.17 4.96 -442.15 -2.19 -26.37 16 9 C 0.54 19.93 6.17 87.66 0.54 20.47 16 10 O -0.58 -27.14 12.82 -3.03 -0.04 -27.18 16 11 C -0.16 -4.23 2.58 -52.90 -0.14 -4.36 16 12 C -0.11 -1.92 8.32 71.98 0.60 -1.32 16 13 C -0.09 -2.23 2.70 -52.18 -0.14 -2.37 16 14 C -0.11 -3.73 7.66 71.98 0.55 -3.17 16 15 C -0.11 -1.88 8.39 71.98 0.60 -1.28 16 16 C -0.09 -2.22 2.70 -52.16 -0.14 -2.36 16 17 C -0.12 -1.92 8.23 71.98 0.59 -1.33 16 18 C -0.13 -4.17 8.81 71.98 0.63 -3.53 16 19 C 0.19 9.72 4.79 86.36 0.41 10.13 16 20 N -0.60 -31.47 2.97 -675.21 -2.01 -33.48 16 21 C -0.26 -14.64 8.40 84.03 0.71 -13.94 16 22 H 0.07 3.70 6.41 -2.91 -0.02 3.68 16 23 C -0.05 -2.73 5.16 84.86 0.44 -2.29 16 24 N -0.93 -58.21 11.06 21.65 0.24 -57.98 16 25 Si 0.96 47.97 29.56 68.60 2.03 50.00 16 26 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 28 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.04 1.57 7.71 -2.38 -0.02 1.55 16 31 H 0.04 1.71 7.38 -2.38 -0.02 1.69 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.41 10.82 7.23 -92.71 -0.67 10.15 16 37 H 0.09 1.17 5.35 -2.39 -0.01 1.16 16 38 H 0.07 1.08 6.66 -2.39 -0.02 1.06 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.04 1.51 8.07 -2.39 -0.02 1.49 16 41 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.05 2.13 3.78 -2.39 -0.01 2.12 16 43 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.08 1.06 5.01 -2.39 -0.01 1.05 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.07 1.09 7.79 -2.38 -0.02 1.08 16 47 H 0.07 1.08 7.73 -2.39 -0.02 1.06 16 48 H 0.09 1.07 5.35 -2.39 -0.01 1.05 16 49 H 0.04 1.71 5.25 -2.39 -0.01 1.69 16 50 H 0.03 1.28 7.99 -2.39 -0.02 1.26 16 51 H 0.08 2.17 7.78 -2.39 -0.02 2.15 16 52 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 53 H 0.04 2.51 6.28 -2.39 -0.01 2.49 16 54 H 0.24 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -76.09 392.66 4.08 -72.01 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.21 Total: 27.33 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 5.84 Total: -4.33 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -3.96 Total: -117.82 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.04 Total: -27.18 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -76.09 4.08 -72.01 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072117154.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.361 kcal (2) G-P(sol) polarization free energy of solvation -76.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds