Wall clock time and date at job start Tue Mar 31 2020 15:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.88317 * 2 1 4 4 C 1.54909 * 111.00338 * 236.07913 * 2 1 3 5 5 N 1.47429 * 104.83167 * 204.91319 * 4 2 1 6 6 C 1.34770 * 125.65085 * 204.17208 * 5 4 2 7 7 O 1.21284 * 119.99851 * 355.63095 * 6 5 4 8 8 C 1.50696 * 120.00285 * 175.62495 * 6 5 4 9 9 C 1.53001 * 110.01408 * 317.60093 * 8 6 5 10 10 C 1.54262 * 110.03636 * 196.15681 * 8 6 5 11 11 C 1.54885 * 104.19576 * 264.32477 * 10 8 6 12 12 C 1.54887 * 102.74820 * 322.05694 * 11 10 8 13 13 H 1.08995 * 110.59723 * 279.20681 * 12 11 10 14 14 C 1.53006 * 110.48475 * 156.62399 * 12 11 10 15 15 C 1.53880 * 110.03233 * 78.98626 * 8 6 5 16 16 C 1.52995 * 110.03167 * 238.57257 * 15 8 6 17 17 C 1.53002 * 110.02995 * 0.02562 * 15 8 6 18 18 C 1.47023 * 108.69824 * 24.13205 * 5 4 2 19 19 C 1.54325 * 107.27416 * 358.93648 * 18 5 4 20 20 H 1.09001 * 110.71553 * 96.17125 * 19 18 5 21 21 N 1.46505 * 110.71907 * 219.44100 * 19 18 5 22 22 C 1.36932 * 120.00246 * 268.52409 * 21 19 18 23 23 H 1.07997 * 119.99720 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99828 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00273 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00048 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47115 * 89.99800 * 26 24 22 28 28 H 1.48502 * 109.47145 * 210.00219 * 26 24 22 29 29 H 1.48502 * 109.47016 * 330.00210 * 26 24 22 30 30 H 1.09004 * 109.47081 * 296.11695 * 1 2 3 31 31 H 1.09000 * 109.47466 * 176.11631 * 1 2 3 32 32 H 1.09002 * 109.46954 * 56.11616 * 1 2 3 33 33 H 1.09000 * 110.36677 * 323.75570 * 4 2 1 34 34 H 1.09001 * 110.36793 * 86.08043 * 4 2 1 35 35 H 1.08999 * 109.47218 * 82.16824 * 9 8 6 36 36 H 1.09005 * 109.47215 * 202.16786 * 9 8 6 37 37 H 1.08994 * 109.47364 * 322.16445 * 9 8 6 38 38 H 1.08999 * 110.48440 * 23.00299 * 10 8 6 39 39 H 1.09003 * 110.48745 * 145.64641 * 10 8 6 40 40 H 1.09006 * 110.75864 * 203.73918 * 11 10 8 41 41 H 1.09003 * 110.91569 * 80.44509 * 11 10 8 42 42 H 1.08999 * 109.46605 * 305.21807 * 14 12 11 43 43 H 1.08997 * 109.47590 * 65.22105 * 14 12 11 44 44 H 1.09003 * 109.47088 * 185.22802 * 14 12 11 45 45 H 1.09000 * 109.47462 * 60.00497 * 16 15 8 46 46 H 1.09007 * 109.47091 * 180.02562 * 16 15 8 47 47 H 1.08995 * 109.47581 * 299.99726 * 16 15 8 48 48 H 1.09002 * 109.47194 * 63.36198 * 17 15 8 49 49 H 1.08999 * 109.46693 * 183.35733 * 17 15 8 50 50 H 1.09002 * 109.47072 * 303.36456 * 17 15 8 51 51 H 1.09001 * 109.88337 * 239.51664 * 18 5 4 52 52 H 1.08997 * 109.88278 * 118.35721 * 18 5 4 53 53 H 0.97003 * 119.99174 * 88.52774 * 21 19 18 54 54 H 0.97001 * 120.00634 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8070 -1.2000 5 7 3.4272 -1.2433 -0.7729 6 6 4.4481 -1.5606 -1.5935 7 8 4.2790 -1.5751 -2.7944 8 6 5.8000 -1.8973 -1.0189 9 6 6.1437 -0.9280 0.1139 10 6 6.8759 -1.8255 -2.1220 11 6 7.0190 -3.2888 -2.6090 12 6 6.8826 -4.1005 -1.2969 13 1 7.8267 -4.1105 -0.7523 14 6 6.4236 -5.5290 -1.5963 15 6 5.8042 -3.3439 -0.4942 16 6 6.1521 -3.3600 0.9956 17 6 4.4348 -3.9876 -0.7208 18 6 3.4674 -1.2739 0.6964 19 6 2.0861 -0.8075 1.2025 20 1 1.4468 -1.6627 1.4214 21 7 2.2286 0.0503 2.3815 22 6 2.1999 -0.4991 3.6355 23 1 2.0718 -1.5647 3.7553 24 6 2.3344 0.3138 4.7526 25 7 2.4890 1.6127 4.6066 26 14 2.2946 -0.4355 6.4632 27 1 3.6729 -0.8053 6.8739 28 1 1.7401 0.5523 7.4236 29 1 1.4390 -1.6492 6.4522 30 1 -0.3633 0.4524 0.9228 31 1 -0.3634 -1.0253 -0.0696 32 1 -0.3633 0.5730 -0.8532 33 1 1.4518 -1.6708 -1.4019 34 1 2.1560 -0.1727 -2.0836 35 1 5.6621 -1.2590 1.0340 36 1 7.2240 -0.9050 0.2572 37 1 5.7899 0.0705 -0.1424 38 1 6.5439 -1.1828 -2.9374 39 1 7.8196 -1.4660 -1.7116 40 1 7.9963 -3.4508 -3.0637 41 1 6.2224 -3.5462 -3.3070 42 1 5.5031 -5.5001 -2.1794 43 1 7.1966 -6.0479 -2.1631 44 1 6.2438 -6.0567 -0.6596 45 1 5.4120 -2.7809 1.5478 46 1 6.1530 -4.3883 1.3574 47 1 7.1395 -2.9226 1.1430 48 1 4.2342 -4.0481 -1.7905 49 1 4.4294 -4.9901 -0.2929 50 1 3.6653 -3.3832 -0.2405 51 1 4.2426 -0.5994 1.0602 52 1 3.6650 -2.2890 1.0408 53 1 2.3432 1.0075 2.2738 54 1 2.5827 2.1809 5.3872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082783663.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:51 Heat of formation + Delta-G solvation = -37.006681 kcal Electronic energy + Delta-G solvation = -30649.588011 eV Core-core repulsion = 27006.847787 eV Total energy + Delta-G solvation = -3642.740224 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.48044 -39.91505 -38.54097 -35.87703 -34.63219 -33.60862 -33.02577 -32.33574 -29.35831 -29.04138 -28.71072 -27.10202 -26.04095 -24.96528 -24.55005 -23.10319 -22.01105 -21.35304 -20.21460 -19.07346 -18.82154 -17.84356 -17.27506 -16.98509 -16.42892 -16.28734 -15.66421 -15.37842 -15.21076 -15.09822 -14.65877 -14.54606 -14.33285 -14.24552 -14.09360 -13.85743 -13.57136 -13.40671 -13.30760 -13.12838 -12.98589 -12.92750 -12.81939 -12.47230 -12.34484 -12.21934 -12.17190 -12.08598 -12.04143 -12.02037 -11.66592 -11.64953 -11.50090 -11.39630 -11.33474 -11.29963 -11.02134 -10.86908 -10.56406 -9.54541 -9.01460 -7.90833 -5.20139 1.52079 1.52757 1.60470 1.65006 2.04457 2.59517 3.31299 3.41195 3.46947 3.51075 3.70885 3.82595 3.93235 4.02980 4.17556 4.20488 4.26675 4.33031 4.34922 4.37707 4.40483 4.46523 4.54502 4.62641 4.64544 4.67276 4.72220 4.78772 4.81079 4.87469 4.88462 4.90702 4.93571 4.99937 5.06338 5.09042 5.10246 5.14466 5.22598 5.23274 5.25793 5.27650 5.31803 5.33276 5.37911 5.43827 5.52368 5.55893 5.58671 5.62565 6.29316 6.59039 7.18734 7.37616 8.08722 8.33483 9.32024 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.004329 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.838362 B = 6466.183181 C = 7529.164727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 H 0.069 0.931 4 C 0.116 3.884 5 N -0.610 5.610 6 C 0.544 3.456 7 O -0.584 6.584 8 C -0.071 4.071 9 C -0.156 4.156 10 C -0.104 4.104 11 C -0.113 4.113 12 C -0.081 4.081 13 H 0.091 0.909 14 C -0.142 4.142 15 C -0.042 4.042 16 C -0.145 4.145 17 C -0.156 4.156 18 C 0.071 3.929 19 C 0.170 3.830 20 H 0.067 0.933 21 N -0.719 5.719 22 C -0.237 4.237 23 H 0.079 0.921 24 C -0.066 4.066 25 N -0.967 5.967 26 Si 0.964 3.036 27 H -0.287 1.287 28 H -0.301 1.301 29 H -0.269 1.269 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.042 0.958 49 H 0.073 0.927 50 H 0.056 0.944 51 H 0.076 0.924 52 H 0.075 0.925 53 H 0.375 0.625 54 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.432 -11.533 -11.889 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.125 4.125 3 H 0.087 0.913 4 C -0.007 4.007 5 N -0.343 5.343 6 C 0.335 3.665 7 O -0.465 6.465 8 C -0.074 4.074 9 C -0.213 4.213 10 C -0.141 4.141 11 C -0.150 4.150 12 C -0.100 4.100 13 H 0.109 0.891 14 C -0.199 4.199 15 C -0.042 4.042 16 C -0.202 4.202 17 C -0.213 4.213 18 C -0.054 4.054 19 C 0.059 3.941 20 H 0.085 0.915 21 N -0.358 5.358 22 C -0.368 4.368 23 H 0.097 0.903 24 C -0.259 4.259 25 N -0.617 5.617 26 Si 0.794 3.206 27 H -0.215 1.215 28 H -0.228 1.228 29 H -0.194 1.194 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.061 0.939 49 H 0.092 0.908 50 H 0.075 0.925 51 H 0.094 0.906 52 H 0.093 0.907 53 H 0.207 0.793 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.356 -11.686 -12.397 18.557 hybrid contribution -0.244 0.630 0.971 1.183 sum 7.112 -11.056 -11.425 17.417 Atomic orbital electron populations 1.21554 0.92543 1.02490 1.01865 1.22548 0.97393 0.98738 0.93831 0.91263 1.22249 0.83114 0.98233 0.97089 1.48515 1.12124 1.66028 1.07588 1.20504 0.85856 0.74697 0.85432 1.90612 1.84480 1.55245 1.16171 1.21489 0.91369 0.97476 0.97071 1.22501 1.03218 0.97292 0.98283 1.22377 0.97123 0.98301 0.96332 1.22494 1.01768 0.93736 0.97047 1.22054 0.97959 0.94689 0.95261 0.89057 1.21854 1.01145 0.95247 1.01682 1.21086 0.95936 0.91040 0.96177 1.22148 1.02079 1.02382 0.93590 1.22296 0.96444 1.01683 1.00839 1.23554 1.01747 1.01828 0.78311 1.21428 0.92795 0.93521 0.86306 0.91463 1.42439 1.86525 1.06072 1.00750 1.19585 1.40241 0.92812 0.84208 0.90267 1.25425 1.03545 0.95763 1.01142 1.69802 1.58439 1.04043 1.29407 0.85283 0.77584 0.77259 0.80496 1.21465 1.22835 1.19426 0.93380 0.91610 0.91206 0.90626 0.91330 0.89875 0.89924 0.94305 0.92670 0.89232 0.89823 0.93053 0.93383 0.91788 0.92006 0.92817 0.91472 0.91074 0.93906 0.90778 0.92526 0.90605 0.90737 0.79283 0.94146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 9.31 71.98 0.67 -2.77 16 2 C -0.11 -3.25 3.27 -9.40 -0.03 -3.28 16 3 H 0.07 2.34 8.01 -2.39 -0.02 2.32 16 4 C 0.12 3.40 6.36 86.85 0.55 3.95 16 5 N -0.61 -18.96 2.52 -811.79 -2.05 -21.01 16 6 C 0.54 17.39 4.47 87.66 0.39 17.78 16 7 O -0.58 -21.92 15.92 -3.04 -0.05 -21.97 16 8 C -0.07 -1.84 0.63 -52.20 -0.03 -1.87 16 9 C -0.16 -4.04 5.93 71.98 0.43 -3.62 16 10 C -0.10 -2.44 5.59 31.67 0.18 -2.26 16 11 C -0.11 -2.33 6.33 31.88 0.20 -2.13 16 12 C -0.08 -1.50 2.91 -9.72 -0.03 -1.53 16 13 H 0.09 1.45 7.83 -2.39 -0.02 1.43 16 14 C -0.14 -2.37 8.03 71.98 0.58 -1.79 16 15 C -0.04 -0.93 0.63 -51.46 -0.03 -0.96 16 16 C -0.15 -3.03 7.02 71.98 0.51 -2.52 16 17 C -0.16 -3.80 5.89 71.98 0.42 -3.37 16 18 C 0.07 2.29 4.27 86.73 0.37 2.66 16 19 C 0.17 6.07 3.08 46.18 0.14 6.21 16 20 H 0.07 2.41 7.99 -2.39 -0.02 2.39 16 21 N -0.72 -32.84 5.15 -317.34 -1.63 -34.47 16 22 C -0.24 -11.98 9.96 84.03 0.84 -11.15 16 23 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 24 C -0.07 -3.55 5.50 84.86 0.47 -3.08 16 25 N -0.97 -56.12 13.06 21.65 0.28 -55.84 16 26 Si 0.96 43.59 29.55 68.60 2.03 45.62 16 27 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 28 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 29 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.60 8.07 -2.39 -0.02 1.58 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.08 2.04 7.98 -2.39 -0.02 2.02 16 34 H 0.07 2.05 8.08 -2.39 -0.02 2.03 16 35 H 0.08 2.29 3.04 -2.39 -0.01 2.28 16 36 H 0.08 1.76 7.33 -2.38 -0.02 1.75 16 37 H 0.04 1.13 7.75 -2.39 -0.02 1.11 16 38 H 0.05 1.54 7.13 -2.39 -0.02 1.52 16 39 H 0.09 1.74 7.50 -2.39 -0.02 1.72 16 40 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.05 1.27 8.04 -2.39 -0.02 1.25 16 42 H 0.05 0.91 6.48 -2.39 -0.02 0.90 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 0.95 7.72 -2.39 -0.02 0.93 16 45 H 0.05 1.32 4.54 -2.39 -0.01 1.31 16 46 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 47 H 0.07 1.33 7.32 -2.39 -0.02 1.31 16 48 H 0.04 1.17 6.83 -2.39 -0.02 1.15 16 49 H 0.07 1.55 7.06 -2.39 -0.02 1.54 16 50 H 0.06 1.54 3.94 -2.39 -0.01 1.53 16 51 H 0.08 2.69 4.94 -2.39 -0.01 2.68 16 52 H 0.07 2.31 4.35 -2.39 -0.01 2.30 16 53 H 0.37 18.84 7.76 -92.71 -0.72 18.12 16 54 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -61.03 383.25 4.37 -56.66 By element: Atomic # 1 Polarization: 40.58 SS G_CDS: 0.17 Total: 40.75 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 5.62 Total: -9.74 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -3.40 Total: -111.32 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.97 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -61.03 4.37 -56.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082783663.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.655 kcal (2) G-P(sol) polarization free energy of solvation -61.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds