Wall clock time and date at job start Tue Mar 31 2020 15:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09009 * 110.30948 * 2 1 4 4 C 1.55017 * 110.35383 * 122.20005 * 2 1 3 5 5 C 1.54536 * 101.55988 * 155.33979 * 4 2 1 6 6 C 1.53721 * 103.62052 * 325.21014 * 5 4 2 7 7 N 1.47186 * 107.13145 * 21.50821 * 6 5 4 8 8 C 1.34769 * 125.66399 * 181.49751 * 7 6 5 9 9 O 1.21286 * 120.00111 * 180.02562 * 8 7 6 10 10 C 1.50704 * 120.00012 * 0.03555 * 8 7 6 11 11 C 1.53003 * 109.47110 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47153 * 60.00024 * 11 10 8 13 13 C 1.52992 * 109.47043 * 180.02562 * 11 10 8 14 14 C 1.52998 * 109.47216 * 300.00301 * 11 10 8 15 15 C 1.52275 * 110.16337 * 206.74042 * 5 4 2 16 16 C 1.53324 * 109.41580 * 297.15384 * 15 5 4 17 17 N 1.46925 * 108.70498 * 306.48639 * 16 15 5 18 18 C 1.36937 * 120.56343 * 234.25829 * 17 16 15 19 19 H 1.07997 * 120.00233 * 152.44537 * 18 17 16 20 20 C 1.38813 * 119.99910 * 332.44234 * 18 17 16 21 21 N 1.31622 * 119.99638 * 159.36402 * 20 18 17 22 22 Si 1.86799 * 120.00097 * 339.35711 * 20 18 17 23 23 H 1.48506 * 109.46834 * 93.22443 * 22 20 18 24 24 H 1.48498 * 109.47046 * 213.21826 * 22 20 18 25 25 H 1.48493 * 109.47248 * 333.22293 * 22 20 18 26 26 C 1.46930 * 118.87203 * 54.24305 * 17 16 15 27 27 C 1.52273 * 110.16364 * 83.61244 * 5 4 2 28 28 H 1.08993 * 109.47560 * 297.79662 * 1 2 3 29 29 H 1.09004 * 109.46862 * 57.79975 * 1 2 3 30 30 H 1.09001 * 109.46656 * 177.79197 * 1 2 3 31 31 H 1.09004 * 111.01713 * 273.41685 * 4 2 1 32 32 H 1.08995 * 111.01591 * 37.25554 * 4 2 1 33 33 H 1.08996 * 109.87436 * 262.14705 * 6 5 4 34 34 H 1.09005 * 109.92948 * 140.89768 * 6 5 4 35 35 H 1.08993 * 109.47173 * 299.99968 * 10 8 7 36 36 H 1.08998 * 109.47149 * 60.00127 * 10 8 7 37 37 H 1.09001 * 109.46855 * 59.99725 * 12 11 10 38 38 H 1.08992 * 109.47108 * 180.02562 * 12 11 10 39 39 H 1.09009 * 109.47073 * 300.00092 * 12 11 10 40 40 H 1.09000 * 109.47558 * 60.00326 * 13 11 10 41 41 H 1.09003 * 109.47233 * 180.02562 * 13 11 10 42 42 H 1.09005 * 109.47520 * 299.99763 * 13 11 10 43 43 H 1.08996 * 109.47516 * 59.99587 * 14 11 10 44 44 H 1.09000 * 109.47520 * 180.02562 * 14 11 10 45 45 H 1.09004 * 109.47066 * 300.00141 * 14 11 10 46 46 H 1.09001 * 109.48064 * 57.13836 * 15 5 4 47 47 H 1.08993 * 109.47969 * 177.17182 * 15 5 4 48 48 H 1.09003 * 109.59422 * 186.72152 * 16 15 5 49 49 H 1.08997 * 109.59545 * 66.26046 * 16 15 5 50 50 H 0.97002 * 119.99813 * 179.97438 * 21 20 18 51 51 H 1.09001 * 109.59952 * 185.98957 * 26 17 16 52 52 H 1.09007 * 109.73080 * 65.59636 * 26 17 16 53 53 H 1.09003 * 109.47871 * 182.82533 * 27 5 4 54 54 H 1.09000 * 109.47766 * 302.85167 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9084 1.0223 0.0000 4 6 2.0692 -0.7745 1.2298 5 6 3.4669 -1.2087 0.7339 6 6 3.2523 -1.4767 -0.7644 7 7 2.0453 -0.7377 -1.1685 8 6 1.5016 -0.7350 -2.4017 9 8 0.5011 -0.0858 -2.6219 10 6 2.1367 -1.5389 -3.5069 11 6 1.3290 -1.3629 -4.7944 12 6 1.3094 0.1160 -5.1860 13 6 1.9734 -2.1796 -5.9163 14 6 -0.1038 -1.8496 -4.5682 15 6 3.9071 -2.4782 1.4505 16 6 4.0366 -2.1970 2.9522 17 7 4.9184 -1.0369 3.1401 18 6 6.0154 -1.1209 3.9553 19 1 6.8738 -0.4917 3.7721 20 6 6.0241 -2.0147 5.0173 21 7 7.1672 -2.4000 5.5438 22 14 4.4134 -2.6705 5.6993 23 1 4.0805 -3.9554 5.0333 24 1 4.5485 -2.8915 7.1616 25 1 3.3310 -1.6863 5.4453 26 6 4.6033 0.2148 2.4380 27 6 4.4703 -0.0820 0.9398 28 1 -0.3634 0.4792 0.9090 29 1 -0.3633 0.5477 -0.8696 30 1 -0.3633 -1.0269 -0.0396 31 1 2.1483 -0.1215 2.0991 32 1 1.4459 -1.6411 1.4501 33 1 3.1079 -2.5438 -0.9330 34 1 4.1124 -1.1217 -1.3323 35 1 3.1572 -1.1919 -3.6684 36 1 2.1510 -2.5925 -3.2278 37 1 2.3302 0.4627 -5.3471 38 1 0.7337 0.2414 -6.1029 39 1 0.8500 0.6975 -4.3866 40 1 1.9869 -3.2331 -5.6371 41 1 1.3983 -2.0539 -6.8337 42 1 2.9943 -1.8333 -6.0776 43 1 -0.5631 -1.2682 -3.7689 44 1 -0.6791 -1.7246 -5.4856 45 1 -0.0898 -2.9032 -4.2892 46 1 3.1666 -3.2617 1.2899 47 1 4.8705 -2.8022 1.0571 48 1 4.4647 -3.0663 3.4513 49 1 3.0533 -1.9804 3.3696 50 1 7.1733 -3.0243 6.2862 51 1 5.4050 0.9357 2.5982 52 1 3.6649 0.6219 2.8148 53 1 5.4397 -0.3811 0.5410 54 1 4.1242 0.8122 0.4214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086901412.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:40 Heat of formation + Delta-G solvation = -40.047928 kcal Electronic energy + Delta-G solvation = -29689.375106 eV Core-core repulsion = 26046.503004 eV Total energy + Delta-G solvation = -3642.872102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.84956 -40.32996 -38.07306 -36.93767 -34.75838 -33.06885 -33.00636 -31.97151 -29.33036 -28.49725 -28.06833 -27.98402 -27.12308 -25.50737 -24.48073 -23.03178 -22.73109 -20.40080 -19.73017 -19.35757 -18.46148 -17.82151 -17.44022 -17.00684 -16.30121 -15.97970 -15.58547 -15.48268 -15.33532 -15.16895 -15.07024 -14.94679 -14.62267 -14.35895 -14.07364 -13.79834 -13.68934 -13.54953 -13.29130 -13.12703 -13.00714 -12.90539 -12.80982 -12.61325 -12.53072 -12.29903 -12.21860 -12.13221 -12.02556 -11.97079 -11.84525 -11.61583 -11.56563 -11.50860 -11.49304 -11.13875 -11.02647 -10.64264 -10.17232 -9.52559 -8.87181 -8.14251 -5.44800 1.30761 1.43046 1.51487 1.73450 2.05328 2.43422 3.09311 3.36691 3.43472 3.52330 3.76428 3.78944 3.89447 3.96816 4.13526 4.13888 4.27832 4.30014 4.40976 4.48168 4.53944 4.57760 4.61910 4.63069 4.68017 4.71412 4.75089 4.78190 4.81315 4.86920 4.87935 4.89177 4.91945 5.01062 5.05306 5.10942 5.15161 5.20244 5.21191 5.24361 5.24496 5.28727 5.31167 5.34784 5.40158 5.55628 5.56649 5.57397 5.66161 5.90756 6.15812 6.66645 6.96333 7.31391 7.66961 8.06859 9.05939 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.024782 B = 0.003072 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.569497 B = 9113.743726 C = 9380.075245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.137 3.863 3 H 0.072 0.928 4 C -0.118 4.118 5 C -0.055 4.055 6 C 0.115 3.885 7 N -0.614 5.614 8 C 0.525 3.475 9 O -0.556 6.556 10 C -0.126 4.126 11 C -0.051 4.051 12 C -0.150 4.150 13 C -0.138 4.138 14 C -0.149 4.149 15 C -0.110 4.110 16 C 0.123 3.877 17 N -0.618 5.618 18 C -0.244 4.244 19 H 0.050 0.950 20 C -0.036 4.036 21 N -0.959 5.959 22 Si 0.945 3.055 23 H -0.274 1.274 24 H -0.316 1.316 25 H -0.260 1.260 26 C 0.143 3.857 27 C -0.108 4.108 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.081 0.919 47 H 0.061 0.939 48 H 0.045 0.955 49 H 0.033 0.967 50 H 0.260 0.740 51 H 0.050 0.950 52 H 0.037 0.963 53 H 0.059 0.941 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.426 0.855 -21.303 25.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.034 3.966 3 H 0.090 0.910 4 C -0.156 4.156 5 C -0.055 4.055 6 C -0.008 4.008 7 N -0.348 5.348 8 C 0.316 3.684 9 O -0.436 6.436 10 C -0.166 4.166 11 C -0.052 4.052 12 C -0.207 4.207 13 C -0.195 4.195 14 C -0.207 4.207 15 C -0.149 4.149 16 C -0.002 4.002 17 N -0.342 5.342 18 C -0.374 4.374 19 H 0.068 0.932 20 C -0.231 4.231 21 N -0.606 5.606 22 Si 0.775 3.225 23 H -0.200 1.200 24 H -0.245 1.245 25 H -0.184 1.184 26 C 0.019 3.981 27 C -0.147 4.147 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.099 0.901 47 H 0.080 0.920 48 H 0.064 0.936 49 H 0.051 0.949 50 H 0.069 0.931 51 H 0.069 0.931 52 H 0.055 0.945 53 H 0.078 0.922 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.914 1.135 -21.404 25.554 hybrid contribution -0.077 -0.353 1.144 1.199 sum -13.991 0.782 -20.260 24.634 Atomic orbital electron populations 1.22008 0.94075 1.01968 1.02765 1.21882 0.94765 0.95444 0.84504 0.91028 1.22923 0.95155 1.00553 0.96977 1.20854 0.95167 0.95776 0.93720 1.22133 0.87170 0.97146 0.94304 1.48793 1.28432 1.48376 1.09231 1.20769 0.83697 0.81643 0.82285 1.90530 1.26533 1.45054 1.81511 1.21831 1.00952 1.01194 0.92611 1.20282 0.95179 0.96133 0.93557 1.22044 1.01309 0.95749 1.01565 1.21857 1.00695 0.99697 0.97293 1.22045 0.95970 1.00534 1.02113 1.21797 1.01575 0.96508 0.95001 1.21383 0.93049 0.89669 0.96118 1.44455 1.28675 1.08355 1.52755 1.18872 0.92530 1.20501 1.05492 0.93179 1.25896 0.99203 1.00047 0.97943 1.69973 1.26695 1.36046 1.27888 0.85928 0.81999 0.78772 0.75828 1.20039 1.24536 1.18406 1.21138 0.98393 0.87127 0.91462 1.21769 0.98456 0.97816 0.96648 0.91310 0.91431 0.93409 0.90091 0.90477 0.89808 0.90029 0.87770 0.87758 0.93011 0.92909 0.92087 0.91943 0.92218 0.91954 0.92042 0.92925 0.93040 0.90057 0.92005 0.93641 0.94883 0.93090 0.93116 0.94536 0.92250 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.60 71.98 0.62 -2.74 16 2 C 0.14 3.03 3.44 45.50 0.16 3.18 16 3 H 0.07 1.62 7.75 -2.38 -0.02 1.61 16 4 C -0.12 -2.75 4.34 31.81 0.14 -2.61 16 5 C -0.05 -1.32 0.55 -51.90 -0.03 -1.34 16 6 C 0.11 2.18 5.67 86.49 0.49 2.67 16 7 N -0.61 -12.81 3.25 -788.55 -2.56 -15.38 16 8 C 0.52 11.29 7.05 87.66 0.62 11.91 16 9 O -0.56 -14.74 9.08 -3.05 -0.03 -14.77 16 10 C -0.13 -1.97 3.96 29.85 0.12 -1.85 16 11 C -0.05 -0.82 0.77 -52.18 -0.04 -0.86 16 12 C -0.15 -2.71 8.18 71.98 0.59 -2.13 16 13 C -0.14 -1.66 8.47 71.98 0.61 -1.05 16 14 C -0.15 -2.70 8.17 71.98 0.59 -2.11 16 15 C -0.11 -3.16 4.72 30.46 0.14 -3.01 16 16 C 0.12 4.76 3.91 86.41 0.34 5.10 16 17 N -0.62 -27.29 2.76 -698.59 -1.93 -29.21 16 18 C -0.24 -13.47 10.03 84.03 0.84 -12.63 16 19 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 20 C -0.04 -2.10 5.23 84.86 0.44 -1.65 16 21 N -0.96 -59.80 13.97 21.65 0.30 -59.49 16 22 Si 0.95 45.66 24.36 68.60 1.67 47.33 16 23 H -0.27 -12.40 6.63 99.48 0.66 -11.74 16 24 H -0.32 -15.76 7.11 99.48 0.71 -15.05 16 25 H -0.26 -11.90 6.64 99.48 0.66 -11.24 16 26 C 0.14 5.06 6.18 86.40 0.53 5.60 16 27 C -0.11 -2.93 4.74 30.46 0.14 -2.78 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.73 6.10 -2.38 -0.01 1.72 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 2.06 6.08 -2.38 -0.01 2.04 16 32 H 0.08 1.77 7.92 -2.39 -0.02 1.75 16 33 H 0.08 1.38 7.78 -2.39 -0.02 1.36 16 34 H 0.08 1.39 7.83 -2.38 -0.02 1.37 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 1.43 5.51 -2.38 -0.01 1.41 16 40 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.06 1.43 5.51 -2.39 -0.01 1.42 16 44 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.08 1.96 8.11 -2.39 -0.02 1.94 16 47 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.05 2.02 4.46 -2.39 -0.01 2.00 16 49 H 0.03 1.25 6.53 -2.39 -0.02 1.23 16 50 H 0.26 15.46 8.31 -92.71 -0.77 14.68 16 51 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 52 H 0.04 1.22 6.48 -2.38 -0.02 1.20 16 53 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 54 H 0.08 1.79 7.47 -2.39 -0.02 1.77 16 Total: -1.00 -66.00 385.47 4.52 -61.49 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.75 Total: 16.34 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 6.31 Total: -6.31 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -4.18 Total: -104.08 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.03 Total: -14.77 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.67 Total: 47.33 kcal Total: -66.00 4.52 -61.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086901412.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.439 kcal (2) G-P(sol) polarization free energy of solvation -66.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds