Wall clock time and date at job start Tue Mar 31 2020 15:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.31317 * 2 1 4 4 C 1.55022 * 110.35194 * 237.68634 * 2 1 3 5 5 C 1.54519 * 101.53191 * 204.75964 * 4 2 1 6 6 C 1.53694 * 103.64510 * 34.82249 * 5 4 2 7 7 N 1.47177 * 107.10963 * 338.45313 * 6 5 4 8 8 C 1.34782 * 125.65920 * 178.46969 * 7 6 5 9 9 O 1.21290 * 119.99813 * 180.02562 * 8 7 6 10 10 C 1.50700 * 120.00235 * 0.03341 * 8 7 6 11 11 C 1.52999 * 109.47001 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47278 * 60.00101 * 11 10 8 13 13 C 1.53000 * 109.47139 * 179.97438 * 11 10 8 14 14 C 1.52995 * 109.47062 * 299.99656 * 11 10 8 15 15 C 1.52274 * 110.20253 * 276.40755 * 5 4 2 16 16 C 1.53318 * 109.41771 * 177.81477 * 15 5 4 17 17 N 1.46923 * 108.71067 * 53.50417 * 16 15 5 18 18 C 1.36944 * 120.55741 * 125.74479 * 17 16 15 19 19 H 1.07995 * 120.00233 * 332.08446 * 18 17 16 20 20 C 1.38811 * 119.99621 * 152.09819 * 18 17 16 21 21 N 1.31618 * 120.00297 * 144.14399 * 20 18 17 22 22 Si 1.86801 * 119.99944 * 324.13796 * 20 18 17 23 23 H 1.48498 * 109.47093 * 270.00633 * 22 20 18 24 24 H 1.48508 * 109.46946 * 30.00425 * 22 20 18 25 25 H 1.48500 * 109.47346 * 150.00602 * 22 20 18 26 26 C 1.46922 * 118.87920 * 306.02334 * 17 16 15 27 27 C 1.52278 * 110.20107 * 153.22020 * 5 4 2 28 28 H 1.09003 * 109.46913 * 299.24664 * 1 2 3 29 29 H 1.08994 * 109.47459 * 59.24780 * 1 2 3 30 30 H 1.09005 * 109.46683 * 179.25068 * 1 2 3 31 31 H 1.09003 * 111.01335 * 86.69659 * 4 2 1 32 32 H 1.08995 * 111.01358 * 322.82081 * 4 2 1 33 33 H 1.09001 * 109.91294 * 97.82566 * 6 5 4 34 34 H 1.09002 * 109.90619 * 218.90022 * 6 5 4 35 35 H 1.09005 * 109.46584 * 299.99664 * 10 8 7 36 36 H 1.08997 * 109.47483 * 59.99189 * 10 8 7 37 37 H 1.08995 * 109.47315 * 59.99362 * 12 11 10 38 38 H 1.09001 * 109.47213 * 180.02562 * 12 11 10 39 39 H 1.09002 * 109.46627 * 299.99375 * 12 11 10 40 40 H 1.08997 * 109.47211 * 59.99578 * 13 11 10 41 41 H 1.08995 * 109.47809 * 180.02562 * 13 11 10 42 42 H 1.09006 * 109.47238 * 300.00087 * 13 11 10 43 43 H 1.09002 * 109.47547 * 60.00194 * 14 11 10 44 44 H 1.09006 * 109.47137 * 180.02562 * 14 11 10 45 45 H 1.09002 * 109.47292 * 300.00133 * 14 11 10 46 46 H 1.08993 * 109.47764 * 57.82598 * 15 5 4 47 47 H 1.08996 * 109.48463 * 297.79994 * 15 5 4 48 48 H 1.08997 * 109.59412 * 293.73535 * 16 15 5 49 49 H 1.08998 * 109.72059 * 173.35250 * 16 15 5 50 50 H 0.97000 * 120.00047 * 354.90519 * 21 20 18 51 51 H 1.08990 * 109.60350 * 173.74891 * 26 17 16 52 52 H 1.09001 * 109.59562 * 294.21827 * 26 17 16 53 53 H 1.08995 * 109.48411 * 302.17389 * 27 5 4 54 54 H 1.09001 * 109.47847 * 62.20319 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0691 -0.7769 -1.2284 5 6 3.4656 -1.2121 -0.7301 6 6 3.2492 -1.4784 0.7681 7 7 2.0430 -0.7369 1.1699 8 6 1.4976 -0.7326 2.4024 9 8 0.4974 -0.0821 2.6206 10 6 2.1304 -1.5357 3.5094 11 6 1.3211 -1.3578 4.7955 12 6 -0.1118 -1.8437 4.5678 13 6 1.9632 -2.1737 5.9192 14 6 1.3020 0.1215 5.1855 15 6 4.4712 -0.0873 -0.9356 16 6 5.8364 -0.5174 -0.3860 17 7 6.2054 -1.8030 -0.9939 18 6 7.4035 -1.9489 -1.6408 19 1 7.8741 -1.0948 -2.1050 20 6 8.0131 -3.1946 -1.7002 21 7 8.6778 -3.5513 -2.7787 22 14 7.8900 -4.3647 -0.2493 23 1 9.0274 -4.1278 0.6755 24 1 6.6113 -4.1302 0.4686 25 1 7.9333 -5.7661 -0.7384 26 6 5.2646 -2.9277 -0.9014 27 6 3.9056 -2.4837 -1.4429 28 1 -0.3633 0.5021 0.8967 29 1 -0.3634 0.5254 -0.8831 30 1 -0.3633 -1.0277 -0.0134 31 1 2.1501 -0.1252 -2.0983 32 1 1.4450 -1.6432 -1.4477 33 1 3.1031 -2.5451 0.9382 34 1 4.1108 -1.1268 1.3357 35 1 2.1443 -2.5896 3.2313 36 1 3.1511 -1.1894 3.6719 37 1 -0.0982 -2.8975 4.2899 38 1 -0.6885 -1.7165 5.4839 39 1 -0.5695 -1.2626 3.7672 40 1 2.9841 -1.8280 6.0816 41 1 1.3864 -2.0473 6.8354 42 1 1.9764 -3.2276 5.6412 43 1 0.8443 0.7026 4.3848 44 1 0.7258 0.2483 6.1020 45 1 2.3228 0.4677 5.3477 46 1 4.1318 0.8045 -0.4088 47 1 4.5602 0.1309 -1.9998 48 1 5.7759 -0.6288 0.6966 49 1 6.5862 0.2335 -0.6349 50 1 8.6802 -2.9758 -3.5595 51 1 5.6362 -3.7648 -1.4922 52 1 5.1586 -3.2309 0.1402 53 1 3.1701 -3.2697 -1.2713 54 1 3.9886 -2.2907 -2.5125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086901413.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:44 Heat of formation + Delta-G solvation = -40.654371 kcal Electronic energy + Delta-G solvation = -29960.350675 eV Core-core repulsion = 26317.452276 eV Total energy + Delta-G solvation = -3642.898399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.86743 -40.29816 -38.05651 -36.93136 -34.84341 -33.27177 -32.76862 -31.94316 -29.19228 -28.64502 -28.06786 -27.99737 -26.67930 -25.46777 -24.46533 -23.06982 -22.34906 -20.37240 -20.19236 -19.46632 -18.72261 -17.89119 -17.18618 -16.67049 -16.29672 -16.03296 -15.70975 -15.51749 -15.26978 -15.15057 -15.11565 -14.99159 -14.74524 -14.26159 -13.87742 -13.77057 -13.66540 -13.42587 -13.29337 -13.02036 -12.92881 -12.90019 -12.73470 -12.61257 -12.41761 -12.30816 -12.30188 -12.16679 -12.11333 -11.89334 -11.65205 -11.62156 -11.54553 -11.51736 -11.27218 -11.06939 -10.96226 -10.36851 -10.16378 -9.53490 -8.94382 -8.53423 -5.38666 1.54724 1.60670 1.71266 1.78855 2.04845 2.63862 3.00265 3.43139 3.48374 3.52404 3.75508 3.78469 3.89679 3.96057 4.12690 4.15181 4.26033 4.30879 4.41103 4.49654 4.51741 4.57744 4.62423 4.63959 4.70443 4.73602 4.76287 4.77906 4.83269 4.86551 4.88874 4.89764 5.00739 5.00921 5.07429 5.10440 5.15157 5.19824 5.21684 5.23187 5.24961 5.28733 5.31957 5.35279 5.39843 5.55837 5.56398 5.58900 5.65613 5.89095 6.31726 6.63992 6.96700 7.29693 7.69608 8.19323 8.83116 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014784 B = 0.003945 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.428725 B = 7095.992247 C = 8306.868135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.134 3.866 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.053 4.053 6 C 0.112 3.888 7 N -0.614 5.614 8 C 0.527 3.473 9 O -0.554 6.554 10 C -0.129 4.129 11 C -0.050 4.050 12 C -0.148 4.148 13 C -0.139 4.139 14 C -0.149 4.149 15 C -0.108 4.108 16 C 0.140 3.860 17 N -0.611 5.611 18 C -0.348 4.348 19 H 0.024 0.976 20 C -0.048 4.048 21 N -0.940 5.940 22 Si 1.061 2.939 23 H -0.300 1.300 24 H -0.228 1.228 25 H -0.301 1.301 26 C 0.137 3.863 27 C -0.113 4.113 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.073 0.927 47 H 0.051 0.949 48 H 0.037 0.963 49 H 0.040 0.960 50 H 0.251 0.749 51 H 0.040 0.960 52 H 0.046 0.954 53 H 0.083 0.917 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.672 4.231 12.976 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.054 4.054 6 C -0.011 4.011 7 N -0.347 5.347 8 C 0.318 3.682 9 O -0.434 6.434 10 C -0.169 4.169 11 C -0.051 4.051 12 C -0.205 4.205 13 C -0.197 4.197 14 C -0.206 4.206 15 C -0.147 4.147 16 C 0.015 3.985 17 N -0.336 5.336 18 C -0.478 4.478 19 H 0.042 0.958 20 C -0.246 4.246 21 N -0.580 5.580 22 Si 0.886 3.114 23 H -0.228 1.228 24 H -0.152 1.152 25 H -0.229 1.229 26 C 0.012 3.988 27 C -0.152 4.152 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.070 0.930 48 H 0.055 0.945 49 H 0.059 0.941 50 H 0.060 0.940 51 H 0.058 0.942 52 H 0.064 0.936 53 H 0.101 0.899 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.722 3.147 13.734 23.431 hybrid contribution 0.455 1.616 -1.302 2.125 sum -18.267 4.763 12.432 22.603 Atomic orbital electron populations 1.22054 0.93780 1.02082 1.03174 1.21940 0.95003 0.95394 0.84565 0.91155 1.22890 0.94504 1.00641 0.96917 1.20823 0.95066 0.95759 0.93732 1.22151 0.86948 0.96810 0.95183 1.48792 1.28265 1.48294 1.09396 1.20677 0.83637 0.81601 0.82295 1.90510 1.26402 1.44933 1.81521 1.21841 1.00846 1.01196 0.93010 1.20273 0.95272 0.96187 0.93322 1.22036 0.95721 1.00544 1.02236 1.21867 1.00639 0.99719 0.97432 1.22043 1.01231 0.95678 1.01678 1.21750 0.94951 0.97102 1.00854 1.21125 0.94734 0.87253 0.95355 1.44361 1.15620 1.09112 1.64502 1.19882 1.00979 0.96113 1.30791 0.95848 1.27200 0.95513 0.99211 1.02668 1.71006 1.47362 1.36980 1.02606 0.84081 0.78679 0.73721 0.74940 1.22803 1.15164 1.22851 1.21403 0.89278 0.89793 0.98297 1.21801 0.97247 0.96631 0.99551 0.91362 0.90860 0.93270 0.89259 0.89837 0.90389 0.90977 0.87990 0.88352 0.93053 0.92758 0.91864 0.92238 0.91975 0.92021 0.91921 0.92704 0.93275 0.90817 0.93010 0.94472 0.94123 0.93971 0.94183 0.93609 0.89878 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 8.71 71.98 0.63 -2.55 16 2 C 0.13 2.85 3.44 45.50 0.16 3.00 16 3 H 0.07 1.54 7.76 -2.39 -0.02 1.53 16 4 C -0.11 -2.28 5.41 31.80 0.17 -2.11 16 5 C -0.05 -1.32 0.53 -51.91 -0.03 -1.35 16 6 C 0.11 2.53 4.69 86.48 0.41 2.94 16 7 N -0.61 -13.73 3.25 -788.63 -2.56 -16.29 16 8 C 0.53 12.23 7.04 87.66 0.62 12.84 16 9 O -0.55 -15.04 9.01 -3.06 -0.03 -15.07 16 10 C -0.13 -2.40 3.96 29.85 0.12 -2.28 16 11 C -0.05 -0.90 0.77 -52.18 -0.04 -0.94 16 12 C -0.15 -2.84 8.18 71.98 0.59 -2.25 16 13 C -0.14 -2.02 8.47 71.98 0.61 -1.41 16 14 C -0.15 -2.95 8.18 71.98 0.59 -2.36 16 15 C -0.11 -3.06 4.78 30.46 0.15 -2.92 16 16 C 0.14 5.04 6.22 86.41 0.54 5.58 16 17 N -0.61 -26.86 2.70 -699.48 -1.89 -28.75 16 18 C -0.35 -19.16 9.70 84.03 0.81 -18.34 16 19 H 0.02 1.45 8.06 -2.91 -0.02 1.42 16 20 C -0.05 -2.74 4.82 84.86 0.41 -2.33 16 21 N -0.94 -58.27 13.70 21.65 0.30 -57.97 16 22 Si 1.06 49.00 26.99 68.60 1.85 50.85 16 23 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.23 -8.86 4.73 99.48 0.47 -8.39 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 C 0.14 5.18 4.06 86.26 0.35 5.53 16 27 C -0.11 -3.31 4.69 30.32 0.14 -3.17 16 28 H 0.07 1.70 5.89 -2.39 -0.01 1.68 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.09 1.72 8.01 -2.39 -0.02 1.70 16 32 H 0.08 1.61 7.92 -2.39 -0.02 1.59 16 33 H 0.08 1.65 7.59 -2.39 -0.02 1.63 16 34 H 0.07 1.72 6.07 -2.39 -0.01 1.70 16 35 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 1.51 5.51 -2.39 -0.01 1.49 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 42 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.06 1.53 5.51 -2.39 -0.01 1.52 16 44 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.07 1.82 7.49 -2.39 -0.02 1.81 16 47 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.04 1.23 6.53 -2.39 -0.02 1.21 16 49 H 0.04 1.57 7.93 -2.39 -0.02 1.55 16 50 H 0.25 15.76 8.73 -92.71 -0.81 14.95 16 51 H 0.04 1.72 5.78 -2.39 -0.01 1.71 16 52 H 0.05 1.59 5.96 -2.39 -0.01 1.57 16 53 H 0.08 2.01 8.10 -2.39 -0.02 1.99 16 54 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -64.87 386.94 4.45 -60.41 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.57 Total: 18.94 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 6.22 Total: -12.12 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -4.16 Total: -103.02 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.03 Total: -15.07 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 1.85 Total: 50.85 kcal Total: -64.87 4.45 -60.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086901413.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.759 kcal (2) G-P(sol) polarization free energy of solvation -64.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds