Wall clock time and date at job start Tue Mar 31 2020 15:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47232 * 2 1 4 4 C 1.53008 * 109.46610 * 119.99937 * 2 1 3 5 5 H 1.08995 * 109.47156 * 299.99790 * 4 2 1 6 6 C 1.53002 * 109.46610 * 179.97438 * 4 2 1 7 7 C 1.50697 * 109.47310 * 60.00031 * 4 2 1 8 8 O 1.21280 * 119.99780 * 35.94446 * 7 4 2 9 9 N 1.34770 * 120.00012 * 215.94344 * 7 4 2 10 10 C 1.47186 * 125.66381 * 5.17260 * 9 7 4 11 11 C 1.53692 * 107.11223 * 178.47446 * 10 9 7 12 12 C 1.54518 * 103.64813 * 338.45584 * 11 10 9 13 13 C 1.47485 * 125.66602 * 185.14914 * 9 7 4 14 14 H 1.09006 * 110.35270 * 85.18094 * 13 9 7 15 15 C 1.53004 * 110.35201 * 322.89765 * 13 9 7 16 16 C 1.52264 * 110.64040 * 96.57037 * 11 10 9 17 17 C 1.53311 * 109.42273 * 63.78174 * 16 11 10 18 18 N 1.46928 * 108.70986 * 53.50882 * 17 16 11 19 19 C 1.36936 * 120.56307 * 125.49471 * 18 17 16 20 20 H 1.07999 * 119.99995 * 324.92591 * 19 18 17 21 21 C 1.38810 * 119.99649 * 144.92293 * 19 18 17 22 22 N 1.31617 * 120.00277 * 344.03894 * 21 19 18 23 23 Si 1.86809 * 119.99667 * 164.04024 * 21 19 18 24 24 H 1.48493 * 109.47361 * 59.99696 * 23 21 19 25 25 H 1.48503 * 109.46973 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46686 * 299.99976 * 23 21 19 27 27 C 1.46919 * 118.87124 * 305.76625 * 18 17 16 28 28 C 1.52280 * 110.62598 * 220.35022 * 11 10 9 29 29 H 1.09008 * 109.46670 * 60.00721 * 1 2 3 30 30 H 1.08998 * 109.46840 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47189 * 300.00293 * 1 2 3 32 32 H 1.09003 * 109.47483 * 239.99658 * 2 1 3 33 33 H 1.08997 * 109.46932 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46671 * 299.99293 * 3 2 1 35 35 H 1.08995 * 109.47273 * 59.99758 * 3 2 1 36 36 H 1.09001 * 109.47020 * 186.44261 * 6 4 2 37 37 H 1.08997 * 109.47253 * 306.44392 * 6 4 2 38 38 H 1.08997 * 109.47439 * 66.44774 * 6 4 2 39 39 H 1.09002 * 109.90666 * 59.10181 * 10 9 7 40 40 H 1.09001 * 109.90636 * 297.84169 * 10 9 7 41 41 H 1.08995 * 111.01265 * 152.88604 * 12 11 10 42 42 H 1.09004 * 111.01331 * 276.76573 * 12 11 10 43 43 H 1.09006 * 109.46845 * 61.45018 * 15 13 9 44 44 H 1.08994 * 109.46903 * 181.44762 * 15 13 9 45 45 H 1.08995 * 109.46703 * 301.45392 * 15 13 9 46 46 H 1.09006 * 109.48256 * 303.79409 * 16 11 10 47 47 H 1.09007 * 109.48213 * 183.76449 * 16 11 10 48 48 H 1.09000 * 109.59860 * 293.73850 * 17 16 11 49 49 H 1.09007 * 109.72632 * 173.35335 * 17 16 11 50 50 H 0.97003 * 119.99623 * 180.02562 * 22 21 19 51 51 H 1.09000 * 109.60205 * 174.00278 * 27 18 17 52 52 H 1.08996 * 109.60631 * 294.47231 * 27 18 17 53 53 H 1.09004 * 109.47804 * 56.20316 * 28 11 10 54 54 H 1.09001 * 109.47785 * 176.21908 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2494 5 1 1.6766 -0.2074 2.1393 6 6 3.5699 -0.7219 1.2490 7 6 1.5376 -2.1421 1.2494 8 8 1.4381 -2.7500 0.2047 9 7 1.1989 -2.7370 2.4102 10 6 1.1678 -2.0872 3.7305 11 6 0.6890 -3.1407 4.7419 12 6 -0.0500 -4.1773 3.8663 13 6 0.7974 -4.1473 2.5686 14 1 1.6771 -4.7822 2.6755 15 6 -0.0439 -4.5986 1.3730 16 6 1.8749 -3.7922 5.4403 17 6 2.6265 -2.7369 6.2600 18 7 1.6712 -2.0634 7.1503 19 6 1.8980 -2.0064 8.4996 20 1 2.3740 -2.8350 9.0026 21 6 1.5160 -0.8834 9.2206 22 7 1.2319 0.2373 8.5917 23 14 1.4051 -0.9630 11.0837 24 1 2.7347 -1.3141 11.6442 25 1 0.9783 0.3580 11.6110 26 1 0.4137 -1.9963 11.4769 27 6 0.4656 -1.4574 6.5691 28 6 -0.2721 -2.5210 5.7475 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9562 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 3.9332 -1.3323 2.0758 37 1 3.9329 -1.1328 0.3070 38 1 3.9337 0.2991 1.3642 39 1 0.4744 -1.2463 3.7140 40 1 2.1667 -1.7427 3.9982 41 1 -0.0261 -5.1653 4.3261 42 1 -1.0755 -3.8637 3.6707 43 1 0.5488 -4.5202 0.4615 44 1 -0.3539 -5.6336 1.5169 45 1 -0.9256 -3.9634 1.2888 46 1 2.5459 -4.2193 4.6950 47 1 1.5182 -4.5808 6.1029 48 1 3.0785 -2.0064 5.5890 49 1 3.4038 -3.2175 6.8542 50 1 0.9653 1.0221 9.0957 51 1 -0.1834 -1.0966 7.3670 52 1 0.7491 -0.6273 5.9220 53 1 -1.1044 -2.0582 5.2172 54 1 -0.6514 -3.2963 6.4132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086946758.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:48 Heat of formation + Delta-G solvation = -52.288721 kcal Electronic energy + Delta-G solvation = -30072.995624 eV Core-core repulsion = 26429.592721 eV Total energy + Delta-G solvation = -3643.402903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.88684 -40.13186 -37.75125 -36.89977 -34.73335 -33.22816 -32.55582 -31.59226 -31.37421 -28.73335 -28.19434 -26.81441 -26.02980 -25.33006 -24.05139 -23.20519 -22.36870 -20.91209 -20.18874 -19.41958 -18.35297 -18.01381 -17.29926 -16.81738 -16.12016 -15.80700 -15.79138 -15.49694 -15.45580 -14.88179 -14.81898 -14.74781 -14.56251 -14.26904 -14.05345 -13.70994 -13.38176 -13.26204 -13.19585 -13.09072 -13.04511 -12.96455 -12.91907 -12.76703 -12.55435 -12.51761 -12.44440 -12.29317 -12.05048 -11.95032 -11.91652 -11.83155 -11.65244 -11.52893 -11.37992 -11.05685 -10.89828 -10.50441 -10.35309 -9.60800 -8.52233 -7.84682 -5.36574 1.48450 1.50155 1.56549 1.64601 2.01182 2.52902 3.28825 3.38530 3.52389 3.66877 3.73503 3.80708 3.85619 3.94656 4.12738 4.20929 4.23725 4.32214 4.38240 4.47129 4.50327 4.57557 4.57825 4.60853 4.69365 4.74554 4.77630 4.78441 4.80315 4.86229 4.88541 4.93326 4.95894 4.99303 5.01070 5.08917 5.13669 5.16492 5.20915 5.24256 5.28026 5.32401 5.37074 5.41547 5.42928 5.47431 5.52742 5.58388 5.70270 5.77793 6.46076 6.56732 7.20743 7.21171 7.89805 8.44838 9.19856 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.003774 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.964661 B = 7417.166161 C = 8417.319921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.145 4.145 4 C -0.106 4.106 5 H 0.087 0.913 6 C -0.136 4.136 7 C 0.536 3.464 8 O -0.569 6.569 9 N -0.613 5.613 10 C 0.118 3.882 11 C -0.051 4.051 12 C -0.111 4.111 13 C 0.130 3.870 14 H 0.076 0.924 15 C -0.152 4.152 16 C -0.106 4.106 17 C 0.142 3.858 18 N -0.605 5.605 19 C -0.269 4.269 20 H 0.058 0.942 21 C -0.037 4.037 22 N -0.929 5.929 23 Si 0.959 3.041 24 H -0.276 1.276 25 H -0.295 1.295 26 H -0.278 1.278 27 C 0.183 3.817 28 C -0.113 4.113 29 H 0.068 0.932 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.045 0.955 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.015 0.985 49 H 0.048 0.952 50 H 0.250 0.750 51 H 0.037 0.963 52 H 0.004 0.996 53 H 0.067 0.933 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.115 -4.141 -15.430 16.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.095 4.095 3 C -0.202 4.202 4 C -0.127 4.127 5 H 0.105 0.895 6 C -0.193 4.193 7 C 0.326 3.674 8 O -0.449 6.449 9 N -0.346 5.346 10 C -0.004 4.004 11 C -0.052 4.052 12 C -0.148 4.148 13 C 0.028 3.972 14 H 0.094 0.906 15 C -0.210 4.210 16 C -0.145 4.145 17 C 0.017 3.983 18 N -0.328 5.328 19 C -0.400 4.400 20 H 0.076 0.924 21 C -0.234 4.234 22 N -0.573 5.573 23 Si 0.787 3.213 24 H -0.202 1.202 25 H -0.221 1.221 26 H -0.204 1.204 27 C 0.057 3.943 28 C -0.152 4.152 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.064 0.936 46 H 0.090 0.910 47 H 0.082 0.918 48 H 0.033 0.967 49 H 0.067 0.933 50 H 0.059 0.941 51 H 0.056 0.944 52 H 0.022 0.978 53 H 0.086 0.914 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.175 -4.266 -15.975 16.577 hybrid contribution -0.065 0.383 1.374 1.428 sum -1.240 -3.884 -14.601 15.159 Atomic orbital electron populations 1.21845 0.95310 1.00916 1.02334 1.20961 0.95747 0.96725 0.96032 1.21869 1.01754 0.94074 1.02468 1.21458 0.98458 0.91579 1.01212 0.89477 1.21712 0.91743 1.03705 1.02153 1.20624 0.76023 0.89056 0.81688 1.90580 1.55853 1.66783 1.31727 1.48806 1.66545 1.12118 1.07153 1.22068 1.01311 0.95816 0.81250 1.20826 0.95917 0.94760 0.93695 1.22907 0.98591 1.00110 0.93231 1.22042 0.97308 0.81934 0.95947 0.90633 1.22070 0.99398 1.01393 0.98132 1.21764 0.96424 0.97921 0.98365 1.21080 0.91769 0.93327 0.92150 1.44142 1.20306 1.65494 1.02886 1.19345 1.37733 0.98344 0.84568 0.92393 1.25858 1.01429 0.94332 1.01752 1.70147 1.50568 1.00680 1.35916 0.85485 0.78223 0.76356 0.81203 1.20204 1.22074 1.20420 1.20506 0.87548 0.91949 0.94259 1.21908 0.97055 0.99107 0.97121 0.91271 0.94496 0.92636 0.91167 0.91481 0.91433 0.92494 0.93034 0.91986 0.89507 0.91802 0.91695 0.88376 0.90228 0.91615 0.90347 0.93616 0.91027 0.91784 0.96749 0.93321 0.94102 0.94403 0.97813 0.91428 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.93 71.98 0.64 -2.56 16 2 C -0.08 -1.62 2.20 -10.79 -0.02 -1.64 16 3 C -0.14 -2.44 8.84 71.98 0.64 -1.81 16 4 C -0.11 -2.52 2.04 -11.54 -0.02 -2.54 16 5 H 0.09 2.12 6.90 -2.39 -0.02 2.10 16 6 C -0.14 -2.89 8.63 71.98 0.62 -2.26 16 7 C 0.54 15.16 5.59 87.66 0.49 15.65 16 8 O -0.57 -18.66 13.34 -3.03 -0.04 -18.70 16 9 N -0.61 -16.62 3.25 -788.61 -2.56 -19.18 16 10 C 0.12 3.37 4.18 86.48 0.36 3.73 16 11 C -0.05 -1.45 0.53 -51.91 -0.03 -1.48 16 12 C -0.11 -2.52 5.41 31.80 0.17 -2.35 16 13 C 0.13 3.16 3.47 45.50 0.16 3.32 16 14 H 0.08 1.80 7.76 -2.38 -0.02 1.78 16 15 C -0.15 -3.60 8.64 71.98 0.62 -2.98 16 16 C -0.11 -3.19 4.78 30.45 0.15 -3.04 16 17 C 0.14 5.53 6.22 86.40 0.54 6.07 16 18 N -0.60 -28.67 2.94 -698.64 -2.05 -30.72 16 19 C -0.27 -14.36 9.49 84.03 0.80 -13.56 16 20 H 0.06 3.05 7.88 -2.91 -0.02 3.03 16 21 C -0.04 -2.00 4.89 84.86 0.41 -1.59 16 22 N -0.93 -53.37 11.68 21.65 0.25 -53.11 16 23 Si 0.96 43.69 29.58 68.60 2.03 45.72 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 C 0.18 8.15 5.02 86.41 0.43 8.58 16 28 C -0.11 -3.76 4.70 30.46 0.14 -3.62 16 29 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.04 0.95 6.86 -2.39 -0.02 0.93 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.65 7.86 -2.39 -0.02 1.63 16 33 H 0.07 1.03 6.58 -2.39 -0.02 1.01 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.54 6.79 -2.39 -0.02 1.53 16 39 H 0.06 1.88 7.36 -2.39 -0.02 1.87 16 40 H 0.06 2.01 6.07 -2.39 -0.01 2.00 16 41 H 0.10 1.94 8.01 -2.39 -0.02 1.93 16 42 H 0.08 1.77 7.92 -2.38 -0.02 1.75 16 43 H 0.06 1.85 5.89 -2.38 -0.01 1.84 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.07 1.89 7.49 -2.38 -0.02 1.87 16 47 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 48 H 0.01 0.58 6.53 -2.39 -0.02 0.56 16 49 H 0.05 1.91 7.93 -2.38 -0.02 1.89 16 50 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 51 H 0.04 1.94 6.55 -2.39 -0.02 1.93 16 52 H 0.00 0.18 7.47 -2.39 -0.02 0.16 16 53 H 0.07 2.03 8.10 -2.38 -0.02 2.01 16 54 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -62.28 395.33 4.57 -57.71 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.84 Total: 20.37 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 6.10 Total: -2.09 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -4.36 Total: -103.02 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.04 Total: -18.70 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -62.28 4.57 -57.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086946758.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.420 kcal (2) G-P(sol) polarization free energy of solvation -62.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds