Wall clock time and date at job start Tue Mar 31 2020 15:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46990 * 2 1 4 4 C 1.52999 * 109.47448 * 120.00148 * 2 1 3 5 5 H 1.09003 * 109.46542 * 300.00270 * 4 2 1 6 6 C 1.52996 * 109.47050 * 180.02562 * 4 2 1 7 7 C 1.50697 * 109.47016 * 59.99780 * 4 2 1 8 8 O 1.21279 * 120.00157 * 36.39526 * 7 4 2 9 9 N 1.34782 * 119.99981 * 216.39261 * 7 4 2 10 10 C 1.47180 * 125.66101 * 5.18066 * 9 7 4 11 11 C 1.53680 * 107.10978 * 181.47894 * 10 9 7 12 12 C 1.54529 * 103.64564 * 21.55309 * 11 10 9 13 13 C 1.47480 * 125.66068 * 185.15081 * 9 7 4 14 14 H 1.08996 * 110.35595 * 274.85051 * 13 9 7 15 15 C 1.52997 * 110.35308 * 37.14543 * 13 9 7 16 16 C 1.52272 * 110.67009 * 263.46625 * 11 10 9 17 17 C 1.53312 * 109.42293 * 176.87674 * 16 11 10 18 18 N 1.46943 * 108.70476 * 53.52294 * 17 16 11 19 19 C 1.36937 * 120.56809 * 125.76711 * 18 17 16 20 20 H 1.08002 * 119.99598 * 331.47299 * 19 18 17 21 21 C 1.38813 * 119.99912 * 151.46864 * 19 18 17 22 22 N 1.31618 * 119.99785 * 345.92342 * 21 19 18 23 23 Si 1.86797 * 119.99790 * 165.92132 * 21 19 18 24 24 H 1.48500 * 109.47258 * 180.02562 * 23 21 19 25 25 H 1.48504 * 109.47198 * 300.00182 * 23 21 19 26 26 H 1.48491 * 109.47311 * 60.00017 * 23 21 19 27 27 C 1.46931 * 118.85809 * 306.03805 * 18 17 16 28 28 C 1.52274 * 110.67196 * 139.64350 * 11 10 9 29 29 H 1.08993 * 109.46845 * 299.99719 * 1 2 3 30 30 H 1.09003 * 109.47105 * 59.99985 * 1 2 3 31 31 H 1.08999 * 109.46816 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46990 * 240.00003 * 2 1 3 33 33 H 1.08994 * 109.46762 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47209 * 299.99951 * 3 2 1 35 35 H 1.08990 * 109.46983 * 59.99917 * 3 2 1 36 36 H 1.09010 * 109.46664 * 186.15843 * 6 4 2 37 37 H 1.09004 * 109.47139 * 306.15484 * 6 4 2 38 38 H 1.08995 * 109.47178 * 66.16154 * 6 4 2 39 39 H 1.08998 * 109.90863 * 62.11353 * 10 9 7 40 40 H 1.09000 * 109.90956 * 300.85354 * 10 9 7 41 41 H 1.09004 * 111.01867 * 83.22436 * 12 11 10 42 42 H 1.09004 * 111.01710 * 207.10702 * 12 11 10 43 43 H 1.09001 * 109.47184 * 175.47826 * 15 13 9 44 44 H 1.08999 * 109.47100 * 295.46902 * 15 13 9 45 45 H 1.08994 * 109.47470 * 55.47508 * 15 13 9 46 46 H 1.09001 * 109.47990 * 56.88896 * 16 11 10 47 47 H 1.09000 * 109.48072 * 296.86091 * 16 11 10 48 48 H 1.09001 * 109.59991 * 293.75968 * 17 16 11 49 49 H 1.08996 * 109.60049 * 173.28548 * 17 16 11 50 50 H 0.97001 * 119.99362 * 180.02562 * 22 21 19 51 51 H 1.09008 * 109.59430 * 173.73265 * 27 18 17 52 52 H 1.09000 * 109.59920 * 294.19511 * 27 18 17 53 53 H 1.09009 * 109.47768 * 303.10562 * 28 11 10 54 54 H 1.08997 * 109.48217 * 63.13189 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5701 -0.7206 1.2494 7 6 1.5378 -2.1420 1.2492 8 8 1.4459 -2.7527 0.2054 9 7 1.1907 -2.7341 2.4092 10 6 1.1499 -2.0808 3.7274 11 6 0.7373 -3.1513 4.7500 12 6 1.0952 -4.4815 4.0497 13 6 0.7881 -4.1440 2.5681 14 1 -0.2767 -4.2594 2.3659 15 6 1.6080 -5.0396 1.6373 16 6 -0.7596 -3.0869 5.0212 17 6 -1.1524 -4.2142 5.9832 18 7 -0.2984 -4.1346 7.1763 19 6 -0.8530 -4.0661 8.4264 20 1 -1.8277 -3.6206 8.5610 21 6 -0.1627 -4.5693 9.5205 22 7 0.8806 -5.3506 9.3378 23 14 -0.7143 -4.1374 11.2521 24 1 0.1826 -4.7953 12.2360 25 1 -0.6564 -2.6651 11.4374 26 1 -2.1074 -4.6079 11.4596 27 6 1.1608 -4.1237 7.0045 28 6 1.5386 -3.0030 6.0363 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.9335 -1.3271 2.0792 37 1 3.9337 -1.1358 0.3094 38 1 3.9330 0.3011 1.3599 39 1 0.4174 -1.2737 3.7191 40 1 2.1355 -1.6884 3.9779 41 1 2.1494 -4.7234 4.1851 42 1 0.4607 -5.2934 4.4051 43 1 1.3565 -6.0838 1.8233 44 1 1.3813 -4.7905 0.6007 45 1 2.6702 -4.8828 1.8247 46 1 -1.3042 -3.2024 4.0841 47 1 -1.0068 -2.1244 5.4691 48 1 -1.0092 -5.1781 5.4947 49 1 -2.1969 -4.1002 6.2730 50 1 1.3628 -5.7025 10.1024 51 1 1.6410 -3.9500 7.9675 52 1 1.4882 -5.0803 6.5973 53 1 2.6034 -3.0598 5.8099 54 1 1.3153 -2.0396 6.4947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086946759.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:52 Heat of formation + Delta-G solvation = -50.891491 kcal Electronic energy + Delta-G solvation = -29755.498289 eV Core-core repulsion = 26112.155975 eV Total energy + Delta-G solvation = -3643.342314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.86417 -40.16024 -37.72866 -36.91242 -34.75615 -33.09955 -32.65528 -31.56137 -31.35994 -28.70411 -28.11598 -27.16726 -25.83136 -25.27415 -24.01861 -23.07618 -22.56617 -21.05139 -19.65300 -19.57790 -18.41130 -18.00496 -17.27003 -16.78149 -16.51922 -15.70727 -15.57340 -15.43261 -15.18974 -15.07924 -14.89108 -14.73195 -14.50409 -14.22881 -14.18142 -13.74120 -13.45308 -13.25521 -13.13561 -13.12087 -13.05706 -12.97575 -12.89357 -12.82258 -12.54645 -12.44797 -12.32215 -12.16310 -12.07636 -11.93029 -11.85718 -11.72181 -11.61743 -11.49432 -11.35243 -11.07441 -10.99196 -10.47958 -10.40402 -9.60034 -8.59822 -7.82938 -5.29527 1.49044 1.50404 1.57075 1.67515 2.01283 2.53738 3.30092 3.40679 3.53775 3.68913 3.74044 3.80740 3.87911 3.97566 4.11594 4.21308 4.27724 4.29870 4.40856 4.49395 4.52619 4.54219 4.61477 4.64071 4.69224 4.73255 4.74605 4.80988 4.83733 4.89146 4.90904 4.91641 4.96667 5.02991 5.03547 5.09490 5.13802 5.18376 5.23016 5.26708 5.28716 5.31394 5.36358 5.44375 5.45592 5.48507 5.54375 5.59743 5.69462 5.86721 6.44427 6.61380 7.20490 7.23024 7.92274 8.42588 9.22186 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021576 B = 0.003091 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.407232 B = 9055.030513 C = 9445.426482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.078 4.078 3 C -0.143 4.143 4 C -0.101 4.101 5 H 0.102 0.898 6 C -0.137 4.137 7 C 0.533 3.467 8 O -0.575 6.575 9 N -0.613 5.613 10 C 0.115 3.885 11 C -0.052 4.052 12 C -0.111 4.111 13 C 0.136 3.864 14 H 0.070 0.930 15 C -0.152 4.152 16 C -0.106 4.106 17 C 0.142 3.858 18 N -0.608 5.608 19 C -0.261 4.261 20 H 0.064 0.936 21 C -0.049 4.049 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.296 1.296 25 H -0.277 1.277 26 H -0.278 1.278 27 C 0.180 3.820 28 C -0.112 4.112 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.048 0.952 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.017 0.983 49 H 0.048 0.952 50 H 0.249 0.751 51 H 0.053 0.947 52 H -0.002 1.002 53 H 0.069 0.931 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 12.112 -16.774 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.097 4.097 3 C -0.200 4.200 4 C -0.123 4.123 5 H 0.120 0.880 6 C -0.194 4.194 7 C 0.323 3.677 8 O -0.455 6.455 9 N -0.346 5.346 10 C -0.007 4.007 11 C -0.053 4.053 12 C -0.149 4.149 13 C 0.033 3.967 14 H 0.088 0.912 15 C -0.210 4.210 16 C -0.145 4.145 17 C 0.017 3.983 18 N -0.332 5.332 19 C -0.391 4.391 20 H 0.082 0.918 21 C -0.245 4.245 22 N -0.581 5.581 23 Si 0.793 3.207 24 H -0.222 1.222 25 H -0.203 1.203 26 H -0.204 1.204 27 C 0.055 3.945 28 C -0.151 4.151 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.035 0.965 49 H 0.067 0.933 50 H 0.058 0.942 51 H 0.071 0.929 52 H 0.016 0.984 53 H 0.087 0.913 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.590 11.750 -17.269 21.193 hybrid contribution -0.331 -0.570 1.289 1.448 sum 3.259 11.179 -15.980 19.773 Atomic orbital electron populations 1.21855 0.95412 1.00736 1.02518 1.20973 0.95648 0.96951 0.96124 1.21858 1.01747 0.93750 1.02635 1.21461 0.98436 0.90836 1.01527 0.88021 1.21735 0.91636 1.03961 1.02073 1.20822 0.76012 0.89366 0.81484 1.90607 1.56056 1.66843 1.32029 1.48799 1.66606 1.11491 1.07696 1.22166 1.02351 0.95440 0.80762 1.20839 0.95959 0.94487 0.93985 1.22819 1.01880 0.97628 0.92575 1.21885 0.98404 0.81171 0.95238 0.91222 1.21995 0.99318 0.99365 1.00275 1.21759 0.94365 0.99575 0.98773 1.21077 0.94029 0.95561 0.87645 1.44264 1.01750 1.85750 1.01438 1.19473 1.03189 1.31293 0.85137 0.91845 1.25762 0.99329 0.97612 1.01765 1.70148 1.23017 1.34998 1.29913 0.85388 0.77367 0.77860 0.80091 1.22197 1.20337 1.20436 1.20492 0.83637 0.93403 0.97011 1.21819 0.98505 0.99924 0.94879 0.91901 0.91640 0.94957 0.91879 0.91418 0.91899 0.91729 0.92630 0.92789 0.88893 0.90055 0.89917 0.91046 0.90725 0.91053 0.91676 0.93268 0.91182 0.91974 0.96514 0.93301 0.94226 0.92852 0.98435 0.91294 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.94 71.98 0.64 -2.09 16 2 C -0.08 -1.37 2.20 -10.79 -0.02 -1.39 16 3 C -0.14 -1.72 8.84 71.98 0.64 -1.08 16 4 C -0.10 -1.88 2.04 -11.54 -0.02 -1.90 16 5 H 0.10 1.61 6.97 -2.39 -0.02 1.59 16 6 C -0.14 -2.17 8.64 71.98 0.62 -1.55 16 7 C 0.53 13.61 5.48 87.66 0.48 14.09 16 8 O -0.58 -18.39 13.71 -3.03 -0.04 -18.43 16 9 N -0.61 -15.27 3.25 -788.67 -2.56 -17.83 16 10 C 0.12 2.61 5.10 86.48 0.44 3.05 16 11 C -0.05 -1.47 0.55 -51.91 -0.03 -1.50 16 12 C -0.11 -3.18 4.35 31.81 0.14 -3.04 16 13 C 0.14 3.62 3.42 45.50 0.16 3.77 16 14 H 0.07 1.90 7.74 -2.39 -0.02 1.88 16 15 C -0.15 -4.01 8.66 71.98 0.62 -3.39 16 16 C -0.11 -3.22 4.74 30.46 0.14 -3.07 16 17 C 0.14 5.57 6.19 86.40 0.53 6.11 16 18 N -0.61 -29.20 2.99 -699.48 -2.09 -31.30 16 19 C -0.26 -13.97 9.59 84.03 0.81 -13.16 16 20 H 0.06 3.33 7.87 -2.91 -0.02 3.30 16 21 C -0.05 -2.70 4.99 84.86 0.42 -2.28 16 22 N -0.93 -54.16 11.04 21.65 0.24 -53.92 16 23 Si 0.96 44.11 29.58 68.60 2.03 46.14 16 24 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 C 0.18 8.18 4.99 86.24 0.43 8.61 16 28 C -0.11 -3.75 4.70 30.30 0.14 -3.61 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.03 0.76 6.87 -2.39 -0.02 0.74 16 32 H 0.06 1.34 7.86 -2.38 -0.02 1.32 16 33 H 0.07 0.70 6.57 -2.39 -0.02 0.69 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 1.04 6.77 -2.39 -0.02 1.02 16 39 H 0.08 1.64 7.71 -2.39 -0.02 1.63 16 40 H 0.08 1.66 7.78 -2.39 -0.02 1.64 16 41 H 0.07 2.08 7.92 -2.39 -0.02 2.06 16 42 H 0.07 2.39 6.08 -2.39 -0.01 2.38 16 43 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.06 1.93 6.13 -2.39 -0.01 1.92 16 45 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.07 1.89 7.47 -2.39 -0.02 1.87 16 47 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.02 0.68 6.47 -2.39 -0.02 0.66 16 49 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 50 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 51 H 0.05 2.82 5.97 -2.38 -0.01 2.80 16 52 H 0.00 -0.12 7.56 -2.39 -0.02 -0.14 16 53 H 0.07 2.06 8.11 -2.38 -0.02 2.04 16 54 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -63.97 394.82 4.56 -59.41 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.84 Total: 18.38 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 6.14 Total: -2.45 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -4.41 Total: -103.05 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.04 Total: -18.43 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -63.97 4.56 -59.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086946759.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.522 kcal (2) G-P(sol) polarization free energy of solvation -63.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds