Wall clock time and date at job start Tue Mar 31 2020 15:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47315 * 2 1 4 4 C 1.52994 * 109.46987 * 120.00492 * 2 1 3 5 5 H 1.09004 * 109.47085 * 299.99395 * 4 2 1 6 6 C 1.52996 * 109.47495 * 59.99619 * 4 2 1 7 7 C 1.50701 * 109.47204 * 179.97438 * 4 2 1 8 8 O 1.21287 * 119.99747 * 339.98175 * 7 4 2 9 9 N 1.34777 * 120.00331 * 159.69768 * 7 4 2 10 10 C 1.47180 * 125.66072 * 355.49319 * 9 7 4 11 11 C 1.53693 * 107.10460 * 178.38554 * 10 9 7 12 12 C 1.54537 * 103.72437 * 338.79637 * 11 10 9 13 13 C 1.47480 * 125.66482 * 175.78967 * 9 7 4 14 14 H 1.09001 * 110.34771 * 85.14586 * 13 9 7 15 15 C 1.52998 * 110.35638 * 322.86467 * 13 9 7 16 16 C 1.52269 * 110.45392 * 96.81554 * 11 10 9 17 17 C 1.53311 * 109.41748 * 183.17511 * 16 11 10 18 18 N 1.46931 * 108.70634 * 306.48958 * 17 16 11 19 19 C 1.36939 * 120.56113 * 234.25301 * 18 17 16 20 20 H 1.07997 * 120.00013 * 31.96434 * 19 18 17 21 21 C 1.38811 * 119.99672 * 211.96327 * 19 18 17 22 22 N 1.31614 * 120.00403 * 13.67947 * 21 19 18 23 23 Si 1.86804 * 119.99677 * 193.68994 * 21 19 18 24 24 H 1.48500 * 109.47249 * 89.99818 * 23 21 19 25 25 H 1.48500 * 109.46783 * 209.99504 * 23 21 19 26 26 H 1.48495 * 109.47101 * 329.99122 * 23 21 19 27 27 C 1.46926 * 118.87391 * 54.23187 * 18 17 16 28 28 C 1.52277 * 110.82730 * 220.60498 * 11 10 9 29 29 H 1.09001 * 109.46508 * 300.00366 * 1 2 3 30 30 H 1.08998 * 109.47153 * 59.99292 * 1 2 3 31 31 H 1.08994 * 109.47259 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46715 * 240.00114 * 2 1 3 33 33 H 1.09000 * 109.46997 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47210 * 300.00066 * 3 2 1 35 35 H 1.09004 * 109.47136 * 60.00372 * 3 2 1 36 36 H 1.08998 * 109.47381 * 50.44853 * 6 4 2 37 37 H 1.09004 * 109.47168 * 170.44846 * 6 4 2 38 38 H 1.09002 * 109.46831 * 290.44452 * 6 4 2 39 39 H 1.09005 * 109.90837 * 297.88782 * 10 9 7 40 40 H 1.09007 * 109.91073 * 59.15434 * 10 9 7 41 41 H 1.09003 * 111.01413 * 276.56784 * 12 11 10 42 42 H 1.08991 * 111.01394 * 152.68754 * 12 11 10 43 43 H 1.09000 * 109.47550 * 61.44085 * 15 13 9 44 44 H 1.08993 * 109.47363 * 181.45011 * 15 13 9 45 45 H 1.09007 * 109.46503 * 301.45166 * 15 13 9 46 46 H 1.08998 * 109.48072 * 303.15949 * 16 11 10 47 47 H 1.09006 * 109.48144 * 63.18637 * 16 11 10 48 48 H 1.08999 * 109.59736 * 186.72666 * 17 16 11 49 49 H 1.08994 * 109.72630 * 66.33126 * 17 16 11 50 50 H 0.97005 * 120.00672 * 180.02562 * 22 21 19 51 51 H 1.08996 * 109.60257 * 185.99910 * 27 18 17 52 52 H 1.09002 * 109.60294 * 65.52322 * 27 18 17 53 53 H 1.09004 * 109.47989 * 297.00937 * 28 11 10 54 54 H 1.09000 * 109.47860 * 57.03574 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 3.5470 -0.7219 1.2489 8 8 4.1533 -0.5401 0.2143 9 7 4.2211 -0.9187 2.3992 10 6 3.6180 -1.0514 3.7352 11 6 4.7655 -1.3020 4.7264 12 6 5.9099 -1.8352 3.8352 13 6 5.6859 -1.0308 2.5292 14 1 6.1359 -0.0414 2.6113 15 6 6.2702 -1.7846 1.3329 16 6 5.1846 0.0000 5.3955 17 6 6.3804 -0.2629 6.3182 18 7 6.0341 -1.3543 7.2390 19 6 6.1493 -1.1858 8.5931 20 1 5.9845 -0.2129 9.0321 21 6 6.4776 -2.2654 9.4014 22 7 6.9388 -3.3744 8.8630 23 14 6.2648 -2.1445 11.2533 24 1 4.9009 -2.5988 11.6255 25 1 7.2731 -3.0036 11.9245 26 1 6.4514 -0.7351 11.6820 27 6 5.5618 -2.6293 6.6822 28 6 4.3711 -2.3509 5.7574 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.7473 -2.6260 0.2863 37 1 2.0258 -2.7245 2.0415 38 1 0.4534 -2.1684 1.4198 39 1 3.0918 -0.1335 3.9977 40 1 2.9276 -1.8948 3.7488 41 1 5.8016 -2.9053 3.6585 42 1 6.8828 -1.6092 4.2715 43 1 6.0571 -1.2337 0.4169 44 1 7.3488 -1.8816 1.4561 45 1 5.8206 -2.7759 1.2735 46 1 5.4665 0.7262 4.6331 47 1 4.3529 0.3920 5.9811 48 1 6.6075 0.6380 6.8881 49 1 7.2483 -0.5479 5.7235 50 1 7.1679 -4.1290 9.4278 51 1 5.2493 -3.2885 7.4920 52 1 6.3641 -3.0997 6.1137 53 1 3.5311 -1.9834 6.3469 54 1 4.0832 -3.2707 5.2483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086946760.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:56 Heat of formation + Delta-G solvation = -51.034430 kcal Electronic energy + Delta-G solvation = -29737.269925 eV Core-core repulsion = 26093.921413 eV Total energy + Delta-G solvation = -3643.348512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.86424 -40.15751 -37.71532 -36.86174 -34.75556 -33.17786 -32.64982 -31.56124 -31.24192 -28.66760 -28.09325 -27.16751 -25.86142 -25.19296 -24.03767 -23.07782 -22.57074 -21.05311 -19.67010 -19.58059 -18.38242 -17.96892 -17.25085 -16.78484 -16.53595 -15.70784 -15.57234 -15.44134 -15.18468 -15.08068 -14.91154 -14.71770 -14.48147 -14.23724 -14.16512 -13.72346 -13.44884 -13.21670 -13.14157 -13.08212 -13.00541 -12.96422 -12.89102 -12.81475 -12.58901 -12.43832 -12.28673 -12.14299 -12.07732 -11.89960 -11.85688 -11.72042 -11.61050 -11.46545 -11.36746 -11.06335 -10.97806 -10.50233 -10.36001 -9.57971 -8.56369 -7.84096 -5.33691 1.48095 1.49178 1.57658 1.69060 2.02273 2.52845 3.29629 3.41579 3.54261 3.70245 3.74605 3.80518 3.88700 3.99064 4.12294 4.22640 4.29366 4.30599 4.42402 4.49580 4.53129 4.56128 4.61856 4.65531 4.69961 4.73287 4.75629 4.82688 4.83548 4.90946 4.92455 4.93822 4.96386 5.04270 5.06752 5.10813 5.14651 5.20703 5.23641 5.27232 5.31580 5.33126 5.36987 5.45194 5.48010 5.50414 5.55640 5.58306 5.69592 5.83972 6.44993 6.62773 7.20458 7.24460 7.91027 8.43426 9.21131 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022848 B = 0.003038 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.174753 B = 9214.776459 C = 9593.079371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C -0.149 4.149 4 C -0.100 4.100 5 H 0.104 0.896 6 C -0.139 4.139 7 C 0.530 3.470 8 O -0.572 6.572 9 N -0.612 5.612 10 C 0.115 3.885 11 C -0.052 4.052 12 C -0.111 4.111 13 C 0.136 3.864 14 H 0.070 0.930 15 C -0.155 4.155 16 C -0.106 4.106 17 C 0.142 3.858 18 N -0.608 5.608 19 C -0.262 4.262 20 H 0.062 0.938 21 C -0.046 4.046 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.284 1.284 25 H -0.297 1.297 26 H -0.270 1.270 27 C 0.184 3.816 28 C -0.112 4.112 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.048 0.952 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.047 0.953 49 H 0.016 0.984 50 H 0.249 0.751 51 H 0.046 0.954 52 H -0.001 1.001 53 H 0.058 0.942 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 5.040 -16.018 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 C -0.207 4.207 4 C -0.121 4.121 5 H 0.122 0.878 6 C -0.196 4.196 7 C 0.321 3.679 8 O -0.452 6.452 9 N -0.345 5.345 10 C -0.007 4.007 11 C -0.053 4.053 12 C -0.149 4.149 13 C 0.034 3.966 14 H 0.088 0.912 15 C -0.212 4.212 16 C -0.145 4.145 17 C 0.017 3.983 18 N -0.331 5.331 19 C -0.392 4.392 20 H 0.080 0.920 21 C -0.242 4.242 22 N -0.579 5.579 23 Si 0.792 3.208 24 H -0.211 1.211 25 H -0.224 1.224 26 H -0.195 1.195 27 C 0.058 3.942 28 C -0.151 4.151 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.034 0.966 50 H 0.058 0.942 51 H 0.064 0.936 52 H 0.017 0.983 53 H 0.076 0.924 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.519 5.029 -16.546 21.349 hybrid contribution 0.665 -0.277 1.285 1.473 sum -11.854 4.751 -15.261 19.900 Atomic orbital electron populations 1.21859 0.92897 1.02728 1.02529 1.20923 0.96762 0.95616 0.96137 1.21875 1.00601 0.96123 1.02063 1.21442 0.89383 0.99814 1.01500 0.87817 1.21769 1.02869 0.92766 1.02227 1.20838 0.90798 0.74817 0.81446 1.90597 1.70943 1.51057 1.32585 1.48758 1.07357 1.71181 1.07225 1.22190 0.95656 1.02505 0.80391 1.20843 0.94534 0.96001 0.93904 1.22818 0.99237 0.99452 0.93411 1.21877 0.80678 0.98711 0.95372 0.91225 1.22032 1.00906 0.99884 0.98392 1.21763 0.98935 0.95743 0.98026 1.21072 0.94684 0.90962 0.91572 1.44239 1.75698 1.11495 1.01699 1.19460 1.40270 0.95862 0.83648 0.92043 1.25844 0.98912 0.97476 1.01955 1.70148 1.47342 1.05092 1.35315 0.85329 0.77030 0.77563 0.80876 1.21086 1.22366 1.19492 1.20516 0.92141 0.87382 0.94165 1.21893 0.98921 0.97635 0.96653 0.91819 0.92025 0.91446 0.92008 0.94266 0.91996 0.92276 0.92703 0.92417 0.89020 0.90028 0.89844 0.91071 0.90802 0.91366 0.91180 0.93262 0.91188 0.91928 0.93400 0.96628 0.94199 0.93579 0.98283 0.92352 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.85 71.98 0.64 -1.10 16 2 C -0.08 -1.33 2.11 -10.79 -0.02 -1.35 16 3 C -0.15 -2.84 8.90 71.98 0.64 -2.20 16 4 C -0.10 -1.82 1.77 -11.54 -0.02 -1.84 16 5 H 0.10 1.61 7.52 -2.38 -0.02 1.59 16 6 C -0.14 -2.13 8.56 71.98 0.62 -1.51 16 7 C 0.53 13.33 6.03 87.66 0.53 13.86 16 8 O -0.57 -17.89 12.48 -3.05 -0.04 -17.92 16 9 N -0.61 -15.02 3.25 -788.63 -2.56 -17.59 16 10 C 0.11 2.56 5.37 86.48 0.46 3.03 16 11 C -0.05 -1.47 0.55 -51.91 -0.03 -1.50 16 12 C -0.11 -3.17 4.34 31.81 0.14 -3.04 16 13 C 0.14 3.61 3.42 45.49 0.16 3.76 16 14 H 0.07 1.89 7.74 -2.39 -0.02 1.87 16 15 C -0.15 -4.06 8.76 71.98 0.63 -3.43 16 16 C -0.11 -3.21 4.72 30.46 0.14 -3.06 16 17 C 0.14 5.60 6.18 86.40 0.53 6.13 16 18 N -0.61 -29.14 2.97 -698.63 -2.07 -31.21 16 19 C -0.26 -14.04 9.55 84.03 0.80 -13.24 16 20 H 0.06 3.24 7.87 -2.91 -0.02 3.22 16 21 C -0.05 -2.52 4.97 84.86 0.42 -2.10 16 22 N -0.93 -54.19 11.27 21.65 0.24 -53.95 16 23 Si 0.96 44.10 29.58 68.60 2.03 46.13 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 C 0.18 8.31 4.99 86.40 0.43 8.74 16 28 C -0.11 -3.70 4.73 30.46 0.14 -3.56 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.70 6.65 -2.39 -0.02 0.69 16 32 H 0.06 1.31 7.90 -2.38 -0.02 1.29 16 33 H 0.04 0.96 6.27 -2.39 -0.01 0.94 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.05 0.92 8.12 -2.39 -0.02 0.90 16 37 H 0.06 0.94 6.99 -2.38 -0.02 0.92 16 38 H 0.09 1.00 6.97 -2.39 -0.02 0.98 16 39 H 0.08 1.62 7.72 -2.38 -0.02 1.60 16 40 H 0.08 1.65 6.66 -2.38 -0.02 1.63 16 41 H 0.07 2.06 7.92 -2.39 -0.02 2.04 16 42 H 0.07 2.37 6.08 -2.39 -0.01 2.36 16 43 H 0.07 2.02 5.93 -2.39 -0.01 2.00 16 44 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 46 H 0.07 1.88 7.47 -2.39 -0.02 1.86 16 47 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 48 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 49 H 0.02 0.63 6.48 -2.39 -0.02 0.62 16 50 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 51 H 0.05 2.42 6.22 -2.39 -0.01 2.40 16 52 H 0.00 -0.04 7.55 -2.39 -0.02 -0.06 16 53 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 54 H 0.07 2.03 8.11 -2.39 -0.02 2.01 16 Total: -1.00 -63.76 392.21 4.66 -59.10 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.85 Total: 17.87 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 6.22 Total: -2.42 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -4.39 Total: -102.75 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.04 Total: -17.92 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -63.76 4.66 -59.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086946760.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.061 kcal (2) G-P(sol) polarization free energy of solvation -63.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds