Wall clock time and date at job start Tue Mar 31 2020 15:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46708 * 2 1 4 4 C 1.52995 * 109.47495 * 119.99770 * 2 1 3 5 5 H 1.08996 * 109.47464 * 300.00585 * 4 2 1 6 6 C 1.53003 * 109.46955 * 60.00380 * 4 2 1 7 7 C 1.50694 * 109.47383 * 180.02562 * 4 2 1 8 8 O 1.21287 * 119.99949 * 324.84269 * 7 4 2 9 9 N 1.34780 * 120.00284 * 144.84681 * 7 4 2 10 10 C 1.47179 * 125.66082 * 5.12146 * 9 7 4 11 11 C 1.53672 * 107.11102 * 181.52577 * 10 9 7 12 12 C 1.54529 * 103.64817 * 21.55119 * 11 10 9 13 13 C 1.47475 * 125.66227 * 185.14267 * 9 7 4 14 14 H 1.08997 * 110.36087 * 274.81061 * 13 9 7 15 15 C 1.52999 * 110.44765 * 37.05452 * 13 9 7 16 16 C 1.52281 * 110.66904 * 263.46540 * 11 10 9 17 17 C 1.53311 * 109.42341 * 176.87523 * 16 11 10 18 18 N 1.46942 * 108.70653 * 53.52411 * 17 16 11 19 19 C 1.36930 * 120.57076 * 125.76128 * 18 17 16 20 20 H 1.07998 * 120.00005 * 331.39122 * 19 18 17 21 21 C 1.38813 * 120.00060 * 151.38223 * 19 18 17 22 22 N 1.31625 * 119.99736 * 342.50091 * 21 19 18 23 23 Si 1.86793 * 120.00175 * 162.49492 * 21 19 18 24 24 H 1.48504 * 109.47291 * 180.02562 * 23 21 19 25 25 H 1.48504 * 109.47188 * 300.00573 * 23 21 19 26 26 H 1.48505 * 109.47157 * 60.00047 * 23 21 19 27 27 C 1.46941 * 118.85739 * 306.03844 * 18 17 16 28 28 C 1.52271 * 110.67261 * 139.64260 * 11 10 9 29 29 H 1.08994 * 109.47315 * 59.99928 * 1 2 3 30 30 H 1.09003 * 109.46429 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47242 * 299.99508 * 1 2 3 32 32 H 1.08996 * 109.47242 * 240.00492 * 2 1 3 33 33 H 1.09006 * 109.46895 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47291 * 300.00087 * 3 2 1 35 35 H 1.08998 * 109.47599 * 60.00336 * 3 2 1 36 36 H 1.09004 * 109.46716 * 294.19170 * 6 4 2 37 37 H 1.08998 * 109.47200 * 54.18957 * 6 4 2 38 38 H 1.09005 * 109.47292 * 174.19304 * 6 4 2 39 39 H 1.09003 * 109.91154 * 62.15208 * 10 9 7 40 40 H 1.09000 * 109.90688 * 300.89791 * 10 9 7 41 41 H 1.08998 * 111.02116 * 83.22579 * 12 11 10 42 42 H 1.09003 * 111.01880 * 207.10876 * 12 11 10 43 43 H 1.09000 * 109.47557 * 175.52752 * 15 13 9 44 44 H 1.09007 * 109.46917 * 295.53273 * 15 13 9 45 45 H 1.09005 * 109.47010 * 55.52507 * 15 13 9 46 46 H 1.08997 * 109.47551 * 56.88882 * 16 11 10 47 47 H 1.09004 * 109.47598 * 296.86404 * 16 11 10 48 48 H 1.08999 * 109.60192 * 293.76028 * 17 16 11 49 49 H 1.09000 * 109.72782 * 173.36369 * 17 16 11 50 50 H 0.96998 * 119.99536 * 179.97438 * 22 21 19 51 51 H 1.08997 * 109.59124 * 173.73410 * 27 18 17 52 52 H 1.08991 * 109.59379 * 294.19348 * 27 18 17 53 53 H 1.09002 * 109.48429 * 303.10154 * 28 11 10 54 54 H 1.09000 * 109.48394 * 63.14035 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 1.5302 -2.1637 1.2492 7 6 3.5470 -0.7206 1.2495 8 8 4.1537 -0.8147 0.2035 9 7 4.2207 -0.6156 2.4121 10 6 3.6181 -0.6021 3.7548 11 6 4.7645 -0.4279 4.7632 12 6 5.8995 0.1965 3.9207 13 6 5.6840 -0.4949 2.5500 14 1 6.1480 -1.4811 2.5458 15 6 6.2578 0.3668 1.4234 16 6 5.2030 -1.7771 5.3168 17 6 6.3965 -1.5783 6.2583 18 7 6.0364 -0.5761 7.2707 19 6 6.1563 -0.8597 8.6049 20 1 6.0599 -1.8780 8.9513 21 6 6.4020 0.1618 9.5123 22 7 6.8569 1.3223 9.0895 23 14 6.0868 -0.1106 11.3332 24 1 6.4252 1.1249 12.0844 25 1 4.6543 -0.4407 11.5437 26 1 6.9298 -1.2325 11.8191 27 6 5.5394 0.7336 6.8267 28 6 4.3571 0.5219 5.8815 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 0.4451 -2.1655 1.3532 37 1 1.8061 -2.6466 0.3118 38 1 1.9760 -2.7067 2.0826 39 1 3.1013 -1.5439 3.9393 40 1 2.9194 0.2302 3.8396 41 1 5.7760 1.2763 3.8375 42 1 6.8764 -0.0528 4.3349 43 1 7.3261 0.5114 1.5845 44 1 6.0986 -0.1321 0.4674 45 1 5.7572 1.3351 1.4157 46 1 5.4937 -2.4304 4.4942 47 1 4.3777 -2.2299 5.8665 48 1 7.2576 -1.2292 5.6884 49 1 6.6400 -2.5213 6.7479 50 1 7.0282 2.0361 9.7235 51 1 5.2155 1.3136 7.6908 52 1 6.3323 1.2666 6.3022 53 1 4.0558 1.4784 5.4544 54 1 3.5233 0.0928 6.4372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086946761.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:00 Heat of formation + Delta-G solvation = -51.231754 kcal Electronic energy + Delta-G solvation = -29769.813631 eV Core-core repulsion = 26126.456562 eV Total energy + Delta-G solvation = -3643.357069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.86573 -40.16059 -37.72295 -36.90569 -34.75204 -33.15160 -32.65618 -31.56701 -31.30907 -28.71293 -28.11730 -27.17314 -25.83983 -25.27878 -24.00199 -23.07803 -22.57773 -21.03457 -19.65771 -19.63054 -18.39734 -17.91510 -17.45333 -16.78144 -16.11951 -15.86474 -15.68593 -15.45656 -15.29228 -15.05414 -14.88614 -14.72168 -14.53203 -14.23324 -14.06372 -13.80627 -13.45023 -13.21325 -13.16652 -13.09637 -13.04916 -12.97134 -12.92102 -12.83383 -12.53736 -12.44496 -12.32629 -12.21518 -12.08262 -11.89942 -11.85611 -11.72631 -11.60910 -11.46636 -11.38798 -11.07393 -10.98247 -10.47913 -10.40548 -9.59755 -8.60914 -7.84414 -5.28996 1.48674 1.50467 1.57093 1.67912 2.01467 2.53807 3.28698 3.40642 3.53415 3.69059 3.73589 3.80636 3.86951 3.97676 4.11989 4.21001 4.26773 4.29996 4.41847 4.48915 4.52486 4.53884 4.60540 4.64223 4.69316 4.73332 4.75936 4.80622 4.83013 4.89013 4.90665 4.92248 4.95974 5.02932 5.04040 5.09173 5.13858 5.18989 5.22303 5.25891 5.30319 5.31173 5.35877 5.44289 5.45637 5.48240 5.54175 5.57709 5.69489 5.83486 6.43148 6.61553 7.19636 7.23281 7.91684 8.42743 9.21306 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021877 B = 0.003084 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.581488 B = 9075.909898 C = 9423.048416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 C -0.148 4.148 4 C -0.101 4.101 5 H 0.101 0.899 6 C -0.137 4.137 7 C 0.532 3.468 8 O -0.575 6.575 9 N -0.613 5.613 10 C 0.115 3.885 11 C -0.052 4.052 12 C -0.111 4.111 13 C 0.136 3.864 14 H 0.070 0.930 15 C -0.152 4.152 16 C -0.105 4.105 17 C 0.142 3.858 18 N -0.608 5.608 19 C -0.262 4.262 20 H 0.063 0.937 21 C -0.048 4.048 22 N -0.933 5.933 23 Si 0.962 3.038 24 H -0.296 1.296 25 H -0.277 1.277 26 H -0.278 1.278 27 C 0.182 3.818 28 C -0.112 4.112 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.047 0.953 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.016 0.984 49 H 0.048 0.952 50 H 0.249 0.751 51 H 0.048 0.952 52 H -0.002 1.002 53 H 0.069 0.931 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.797 -3.169 -16.453 21.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.096 4.096 3 C -0.205 4.205 4 C -0.123 4.123 5 H 0.119 0.881 6 C -0.195 4.195 7 C 0.323 3.677 8 O -0.455 6.455 9 N -0.346 5.346 10 C -0.007 4.007 11 C -0.053 4.053 12 C -0.149 4.149 13 C 0.033 3.967 14 H 0.088 0.912 15 C -0.209 4.209 16 C -0.144 4.144 17 C 0.017 3.983 18 N -0.331 5.331 19 C -0.393 4.393 20 H 0.081 0.919 21 C -0.243 4.243 22 N -0.579 5.579 23 Si 0.791 3.209 24 H -0.222 1.222 25 H -0.203 1.203 26 H -0.204 1.204 27 C 0.056 3.944 28 C -0.151 4.151 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.034 0.966 49 H 0.067 0.933 50 H 0.058 0.942 51 H 0.066 0.934 52 H 0.017 0.983 53 H 0.087 0.913 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.468 -3.103 -16.975 21.289 hybrid contribution 0.625 0.237 1.289 1.452 sum -11.843 -2.866 -15.686 19.862 Atomic orbital electron populations 1.21858 0.92714 1.02817 1.02596 1.20960 0.97051 0.95452 0.96170 1.21857 0.99982 0.96309 1.02400 1.21457 0.89371 0.99955 1.01475 0.88059 1.21749 1.02895 0.92677 1.02159 1.20825 0.90771 0.74565 0.81541 1.90610 1.70981 1.51795 1.32148 1.48794 1.07508 1.72016 1.06270 1.22167 0.95663 1.02783 0.80081 1.20838 0.94527 0.96040 0.93866 1.22819 0.99355 0.99730 0.93031 1.21879 0.80768 0.98780 0.95258 0.91172 1.21994 1.00950 0.99171 0.98813 1.21756 0.98914 0.95447 0.98313 1.21075 0.94682 0.92222 0.90327 1.44261 1.74655 1.12733 1.01463 1.19443 1.42065 0.93927 0.83822 0.91896 1.25741 0.99612 0.97164 1.01822 1.70180 1.47934 1.05199 1.34547 0.85422 0.78270 0.76506 0.80722 1.22225 1.20347 1.20386 1.20444 0.92149 0.86597 0.95199 1.21813 0.98922 0.98302 0.96077 0.91931 0.91332 0.91790 0.91834 0.94887 0.91694 0.92072 0.88933 0.92792 0.92394 0.89915 0.89984 0.91097 0.90720 0.91064 0.91665 0.93346 0.91124 0.91892 0.96594 0.93304 0.94220 0.93381 0.98349 0.91281 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.84 71.98 0.64 -1.09 16 2 C -0.08 -1.36 2.19 -10.79 -0.02 -1.39 16 3 C -0.15 -2.80 8.93 71.98 0.64 -2.16 16 4 C -0.10 -1.87 1.95 -11.54 -0.02 -1.89 16 5 H 0.10 1.61 6.89 -2.39 -0.02 1.59 16 6 C -0.14 -2.11 8.65 71.98 0.62 -1.49 16 7 C 0.53 13.54 5.53 87.65 0.48 14.02 16 8 O -0.58 -18.32 13.62 -3.05 -0.04 -18.37 16 9 N -0.61 -15.18 3.25 -788.69 -2.56 -17.75 16 10 C 0.12 2.59 5.39 86.48 0.47 3.06 16 11 C -0.05 -1.47 0.55 -51.91 -0.03 -1.49 16 12 C -0.11 -3.18 4.35 31.81 0.14 -3.04 16 13 C 0.14 3.61 3.42 45.50 0.16 3.76 16 14 H 0.07 1.90 7.74 -2.39 -0.02 1.88 16 15 C -0.15 -4.01 8.67 71.98 0.62 -3.38 16 16 C -0.11 -3.18 4.74 30.46 0.14 -3.04 16 17 C 0.14 5.56 6.19 86.40 0.53 6.10 16 18 N -0.61 -29.11 2.98 -699.48 -2.09 -31.20 16 19 C -0.26 -14.06 9.56 84.03 0.80 -13.26 16 20 H 0.06 3.31 7.89 -2.91 -0.02 3.28 16 21 C -0.05 -2.62 4.89 84.86 0.42 -2.20 16 22 N -0.93 -54.20 11.27 21.65 0.24 -53.95 16 23 Si 0.96 44.08 29.59 68.60 2.03 46.11 16 24 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 27 C 0.18 8.23 5.00 86.24 0.43 8.66 16 28 C -0.11 -3.72 4.70 30.30 0.14 -3.58 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.70 6.56 -2.39 -0.02 0.69 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 1.35 7.86 -2.39 -0.02 1.33 16 33 H 0.03 0.79 6.83 -2.38 -0.02 0.77 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.00 6.76 -2.38 -0.02 0.98 16 37 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.08 1.64 7.83 -2.39 -0.02 1.63 16 40 H 0.08 1.64 7.25 -2.39 -0.02 1.62 16 41 H 0.07 2.06 7.92 -2.39 -0.02 2.04 16 42 H 0.07 2.39 6.08 -2.39 -0.01 2.38 16 43 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.06 1.93 6.13 -2.38 -0.01 1.92 16 45 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 46 H 0.07 1.88 7.47 -2.39 -0.02 1.86 16 47 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 48 H 0.02 0.64 6.47 -2.39 -0.02 0.63 16 49 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 50 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 51 H 0.05 2.52 6.10 -2.39 -0.01 2.51 16 52 H 0.00 -0.08 7.56 -2.39 -0.02 -0.09 16 53 H 0.07 2.05 8.11 -2.39 -0.02 2.03 16 54 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -64.15 394.69 4.59 -59.56 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.84 Total: 18.00 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 6.17 Total: -2.41 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -4.41 Total: -102.90 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.04 Total: -18.37 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -64.15 4.59 -59.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086946761.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.329 kcal (2) G-P(sol) polarization free energy of solvation -64.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds