Wall clock time and date at job start Tue Mar 31 2020 15:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47081 * 2 1 4 4 C 1.52993 * 109.47087 * 120.00572 * 2 1 3 5 5 C 1.52998 * 109.47303 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47341 * 300.00208 * 5 4 2 7 7 H 1.09009 * 109.46983 * 299.99645 * 6 5 4 8 8 C 1.50701 * 109.47714 * 180.02562 * 6 5 4 9 9 O 1.21280 * 119.99313 * 273.29990 * 8 6 5 10 10 N 1.34684 * 120.00219 * 93.29198 * 8 6 5 11 11 C 1.45358 * 121.27903 * 179.89391 * 10 8 6 12 12 C 1.51955 * 115.85802 * 279.31755 * 11 10 8 13 13 C 1.52334 * 113.35783 * 347.23860 * 12 11 10 14 14 C 1.52526 * 111.47211 * 275.26323 * 13 12 11 15 15 C 1.51577 * 112.38596 * 56.00916 * 14 13 12 16 16 C 1.53971 * 111.22073 * 64.63021 * 15 14 13 17 17 H 1.10386 * 107.49543 * 132.32429 * 16 15 14 18 18 N 1.44682 * 113.52388 * 12.08538 * 16 15 14 19 19 C 1.36926 * 120.00273 * 85.00052 * 18 16 15 20 20 H 1.08002 * 120.00482 * 359.97438 * 19 18 16 21 21 C 1.38816 * 120.00159 * 180.02562 * 19 18 16 22 22 N 1.31615 * 119.99830 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99995 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47235 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46958 * 119.99864 * 23 21 19 26 26 H 1.48500 * 109.46756 * 239.99561 * 23 21 19 27 27 C 1.48413 * 120.06336 * 355.44331 * 10 8 6 28 28 C 1.53000 * 109.47334 * 59.99617 * 6 5 4 29 29 C 1.53002 * 109.47003 * 300.00179 * 28 6 5 30 30 H 1.08999 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46663 * 299.99627 * 1 2 3 32 32 H 1.08997 * 109.46985 * 59.99544 * 1 2 3 33 33 H 1.09000 * 109.47461 * 299.99948 * 4 2 1 34 34 H 1.08998 * 109.47627 * 59.99762 * 4 2 1 35 35 H 1.09002 * 109.47609 * 180.02562 * 5 4 2 36 36 H 1.08998 * 109.47264 * 60.00067 * 5 4 2 37 37 H 1.10150 * 108.15914 * 41.76735 * 11 10 8 38 38 H 1.10027 * 108.50156 * 156.49840 * 11 10 8 39 39 H 1.10059 * 109.11308 * 108.76045 * 12 11 10 40 40 H 1.09952 * 109.38056 * 225.32202 * 12 11 10 41 41 H 1.07920 * 111.93731 * 41.48326 * 13 12 11 42 42 H 1.10874 * 107.65224 * 157.75372 * 13 12 11 43 43 H 1.10041 * 108.44677 * 295.98822 * 14 13 12 44 44 H 1.09192 * 109.81725 * 179.21017 * 14 13 12 45 45 H 1.09041 * 110.16201 * 303.28667 * 15 14 13 46 46 H 1.09558 * 109.33927 * 184.39292 * 15 14 13 47 47 H 0.97002 * 119.99212 * 264.99731 * 18 16 15 48 48 H 0.97007 * 120.00045 * 180.02562 * 22 21 19 49 49 H 1.08736 * 109.29006 * 337.72865 * 27 10 8 50 50 H 1.08627 * 109.50849 * 216.22948 * 27 10 8 51 51 H 1.08999 * 109.47020 * 59.99988 * 28 6 5 52 52 H 1.09002 * 109.47449 * 180.02562 * 28 6 5 53 53 H 1.09002 * 109.47394 * 179.97438 * 29 28 6 54 54 H 1.08997 * 109.47604 * 300.00312 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5700 -0.7219 1.2488 6 6 4.0795 -1.4434 -0.0005 7 1 3.7158 -2.4710 -0.0003 8 6 5.5865 -1.4446 -0.0005 9 8 6.1935 -0.5066 -0.4723 10 7 6.2592 -2.4871 0.5236 11 6 7.7124 -2.5182 0.5360 12 6 8.3774 -2.9421 -0.7628 13 6 7.4086 -3.5573 -1.7646 14 6 7.2046 -5.0459 -1.5023 15 6 6.7335 -5.3237 -0.0886 16 6 5.3380 -4.7232 0.1619 17 1 4.7217 -5.5041 0.6404 18 7 4.6734 -4.2833 -1.0456 19 6 3.9573 -5.1762 -1.7971 20 1 3.8888 -6.2091 -1.4888 21 6 3.3200 -4.7543 -2.9559 22 7 3.4038 -3.4958 -3.3320 23 14 2.3436 -5.9726 -3.9815 24 1 2.4050 -7.3142 -3.3479 25 1 0.9291 -5.5281 -4.0645 26 1 2.9210 -6.0440 -5.3478 27 6 5.5213 -3.5878 1.1917 28 6 3.5696 -0.7220 -1.2497 29 6 2.0395 -0.7215 -1.2494 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.6767 -0.2076 2.1392 34 1 1.6767 -1.7490 1.2491 35 1 3.9334 -1.2362 2.1385 36 1 3.9337 0.3056 1.2487 37 1 8.0749 -1.5148 0.8102 38 1 8.0403 -3.1925 1.3412 39 1 8.8583 -2.0662 -1.2241 40 1 9.1756 -3.6661 -0.5447 41 1 6.4719 -3.0225 -1.8003 42 1 7.8590 -3.4575 -2.7728 43 1 8.1638 -5.5618 -1.6596 44 1 6.4963 -5.4556 -2.2253 45 1 7.4391 -4.9080 0.6312 46 1 6.6789 -6.4065 0.0694 47 1 4.7351 -3.3558 -1.3227 48 1 2.9582 -3.2008 -4.1416 49 1 4.5482 -3.2246 1.5134 50 1 6.0971 -3.9485 2.0393 51 1 3.9332 0.3055 -1.2498 52 1 3.9322 -1.2363 -2.1397 53 1 1.6761 -0.2073 -2.1391 54 1 1.6758 -1.7490 -1.2492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088415352.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:17 Heat of formation + Delta-G solvation = -62.049433 kcal Electronic energy + Delta-G solvation = -31493.898660 eV Core-core repulsion = 27850.072501 eV Total energy + Delta-G solvation = -3643.826159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.68017 -39.37718 -38.40388 -35.99682 -35.23348 -33.82219 -33.36815 -31.58150 -31.01754 -29.28555 -27.95119 -27.15329 -25.67134 -24.22031 -23.52088 -22.61245 -21.58337 -20.82063 -20.48293 -19.34075 -19.20644 -17.89713 -17.00240 -16.70804 -16.35587 -16.00803 -15.88642 -15.34015 -15.17213 -15.08324 -14.98038 -14.97341 -14.82087 -14.16036 -13.92357 -13.77790 -13.43893 -13.22769 -13.01187 -13.00463 -12.90139 -12.82349 -12.72566 -12.43423 -12.41587 -12.21714 -12.07577 -11.91200 -11.79466 -11.72722 -11.54344 -11.52424 -11.35193 -11.32631 -11.12682 -10.84808 -10.80075 -10.68333 -10.37974 -9.51345 -8.75125 -7.76892 -5.02753 1.47474 1.50996 1.57066 1.76192 2.18244 2.63649 3.53614 3.56976 3.81946 3.90508 3.93758 4.04075 4.06480 4.14972 4.18856 4.26066 4.30650 4.36001 4.39580 4.43156 4.58968 4.61928 4.65977 4.67029 4.75493 4.76359 4.78604 4.83213 4.88450 4.95550 4.99057 5.02856 5.05479 5.12151 5.14665 5.18367 5.22024 5.25336 5.32518 5.34727 5.42730 5.48492 5.49161 5.56028 5.62589 5.69438 5.70676 5.72624 5.82474 5.85159 6.44571 6.51535 7.35652 7.51814 8.35167 8.54025 9.42422 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.009045 B = 0.007647 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.944214 B = 3660.501204 C = 5749.028991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.103 4.103 5 C -0.100 4.100 6 C -0.104 4.104 7 H 0.101 0.899 8 C 0.522 3.478 9 O -0.590 6.590 10 N -0.596 5.596 11 C 0.116 3.884 12 C -0.119 4.119 13 C -0.096 4.096 14 C -0.084 4.084 15 C -0.131 4.131 16 C 0.144 3.856 17 H 0.052 0.948 18 N -0.715 5.715 19 C -0.225 4.225 20 H 0.070 0.930 21 C -0.058 4.058 22 N -0.941 5.941 23 Si 0.948 3.052 24 H -0.272 1.272 25 H -0.300 1.300 26 H -0.308 1.308 27 C 0.097 3.903 28 C -0.089 4.089 29 C -0.093 4.093 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.109 0.891 39 H 0.042 0.958 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.012 0.988 43 H 0.045 0.955 44 H 0.034 0.966 45 H 0.080 0.920 46 H 0.051 0.949 47 H 0.383 0.617 48 H 0.242 0.758 49 H 0.085 0.915 50 H 0.125 0.875 51 H 0.045 0.955 52 H 0.046 0.954 53 H 0.047 0.953 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.378 2.280 14.585 14.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.087 0.913 4 C -0.141 4.141 5 C -0.137 4.137 6 C -0.125 4.125 7 H 0.119 0.881 8 C 0.312 3.688 9 O -0.470 6.470 10 N -0.327 5.327 11 C -0.007 4.007 12 C -0.158 4.158 13 C -0.135 4.135 14 C -0.122 4.122 15 C -0.172 4.172 16 C 0.033 3.967 17 H 0.070 0.930 18 N -0.357 5.357 19 C -0.357 4.357 20 H 0.088 0.912 21 C -0.252 4.252 22 N -0.591 5.591 23 Si 0.780 3.220 24 H -0.196 1.196 25 H -0.228 1.228 26 H -0.237 1.237 27 C -0.025 4.025 28 C -0.127 4.127 29 C -0.131 4.131 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.061 0.939 40 H 0.108 0.892 41 H 0.063 0.937 42 H 0.031 0.969 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.098 0.902 46 H 0.070 0.930 47 H 0.219 0.781 48 H 0.052 0.948 49 H 0.103 0.897 50 H 0.143 0.857 51 H 0.063 0.937 52 H 0.065 0.935 53 H 0.066 0.934 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.634 2.577 14.276 14.744 hybrid contribution -0.411 -0.420 -2.031 2.114 sum 2.224 2.157 12.245 12.631 Atomic orbital electron populations 1.21780 0.94277 1.01675 1.02104 1.21172 0.96177 0.99180 0.94404 0.91251 1.21529 0.93654 1.00995 0.97882 1.21467 0.96978 1.00043 0.95255 1.21420 0.90077 1.03132 0.97875 0.88138 1.20971 0.90830 0.81036 0.75973 1.90586 1.71370 1.37083 1.48003 1.48020 1.06738 1.21038 1.56904 1.21205 0.79450 1.02203 0.97793 1.21713 0.98031 1.00206 0.95816 1.21111 0.98966 0.96926 0.96452 1.20849 0.98827 0.94334 0.98143 1.22291 0.98705 1.00095 0.96081 1.21066 0.92727 0.95065 0.87819 0.92997 1.42161 1.58272 1.09939 1.25363 1.19411 1.21767 0.91943 1.02621 0.91216 1.25184 1.03049 0.97091 0.99883 1.69768 1.49004 1.14987 1.25351 0.85454 0.78242 0.79587 0.78687 1.19635 1.22777 1.23687 1.23128 0.97684 0.86450 0.95220 1.21157 0.96232 0.98534 0.96803 1.21336 0.94210 0.99880 0.97650 0.93321 0.90912 0.93023 0.89343 0.92139 0.90099 0.92208 0.92669 0.87281 0.93939 0.89208 0.93678 0.96874 0.93611 0.94730 0.90177 0.93010 0.78060 0.94838 0.89673 0.85722 0.93669 0.93502 0.93402 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.19 71.98 0.66 -2.62 16 2 C -0.09 -2.48 2.72 -10.79 -0.03 -2.51 16 3 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 4 C -0.10 -2.53 5.20 30.59 0.16 -2.37 16 5 C -0.10 -2.73 5.03 30.59 0.15 -2.58 16 6 C -0.10 -3.72 0.86 -11.54 -0.01 -3.73 16 7 H 0.10 3.94 4.73 -2.38 -0.01 3.93 16 8 C 0.52 19.86 4.69 87.67 0.41 20.28 16 9 O -0.59 -26.61 16.08 -3.03 -0.05 -26.66 16 10 N -0.60 -18.50 1.49 -817.01 -1.22 -19.71 16 11 C 0.12 3.16 4.61 86.25 0.40 3.55 16 12 C -0.12 -3.59 5.37 30.03 0.16 -3.42 16 13 C -0.10 -3.75 4.93 30.22 0.15 -3.60 16 14 C -0.08 -3.04 4.83 29.97 0.14 -2.89 16 15 C -0.13 -3.92 5.21 30.46 0.16 -3.76 16 16 C 0.14 4.82 2.75 46.13 0.13 4.95 16 17 H 0.05 1.70 8.14 -1.64 -0.01 1.69 16 18 N -0.72 -31.69 2.52 -321.12 -0.81 -32.50 16 19 C -0.23 -11.40 8.84 84.04 0.74 -10.66 16 20 H 0.07 3.46 7.83 -2.91 -0.02 3.44 16 21 C -0.06 -3.14 5.50 84.86 0.47 -2.68 16 22 N -0.94 -53.82 12.46 21.65 0.27 -53.55 16 23 Si 0.95 45.22 29.55 68.60 2.03 47.25 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 26 H -0.31 -15.30 7.11 99.48 0.71 -14.59 16 27 C 0.10 2.54 5.19 86.48 0.45 2.99 16 28 C -0.09 -3.64 4.84 30.60 0.15 -3.50 16 29 C -0.09 -3.37 5.20 30.60 0.16 -3.21 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.85 7.49 -2.39 -0.02 1.83 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.05 1.56 7.87 -1.77 -0.01 1.55 16 38 H 0.11 2.04 6.75 -1.84 -0.01 2.02 16 39 H 0.04 1.35 8.23 -1.82 -0.01 1.34 16 40 H 0.09 2.14 8.06 -1.88 -0.02 2.13 16 41 H 0.04 2.13 4.14 -2.95 -0.01 2.12 16 42 H 0.01 0.52 8.29 -1.38 -0.01 0.51 16 43 H 0.05 1.45 8.23 -1.83 -0.02 1.44 16 44 H 0.03 1.55 6.85 -2.29 -0.02 1.53 16 45 H 0.08 1.87 4.98 -2.37 -0.01 1.86 16 46 H 0.05 1.46 8.19 -2.09 -0.02 1.44 16 47 H 0.38 18.26 3.13 -92.71 -0.29 17.97 16 48 H 0.24 13.97 8.31 -92.70 -0.77 13.20 16 49 H 0.08 2.18 5.49 -2.53 -0.01 2.17 16 50 H 0.12 2.15 7.45 -2.58 -0.02 2.13 16 51 H 0.04 1.85 7.86 -2.39 -0.02 1.83 16 52 H 0.05 2.35 7.54 -2.39 -0.02 2.34 16 53 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 54 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -65.79 381.24 5.28 -60.51 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: 0.61 Total: 40.43 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 4.45 Total: -15.76 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -1.76 Total: -105.77 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.05 Total: -26.66 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -65.79 5.28 -60.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088415352.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.541 kcal (2) G-P(sol) polarization free energy of solvation -65.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds