Wall clock time and date at job start Tue Mar 31 2020 15:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.87271 * 2 1 4 4 C 1.54322 * 109.88185 * 238.98757 * 2 1 3 5 5 H 1.09000 * 110.72158 * 336.92354 * 4 2 1 6 6 N 1.46501 * 110.72434 * 100.02637 * 4 2 1 7 7 C 1.34767 * 120.00031 * 202.55724 * 6 4 2 8 8 O 1.21280 * 120.00440 * 0.02562 * 7 6 4 9 9 C 1.50707 * 119.99948 * 179.97438 * 7 6 4 10 10 C 1.53003 * 110.01549 * 308.41950 * 9 7 6 11 11 C 1.54267 * 110.03142 * 187.03192 * 9 7 6 12 12 C 1.54885 * 104.19494 * 264.27401 * 11 9 7 13 13 C 1.54891 * 102.74931 * 322.05816 * 12 11 9 14 14 H 1.08996 * 110.48813 * 279.26129 * 13 12 11 15 15 C 1.52999 * 110.48251 * 156.75195 * 13 12 11 16 16 C 1.53868 * 110.07266 * 69.83960 * 9 7 6 17 17 C 1.52996 * 110.03192 * 0.02562 * 16 9 7 18 18 C 1.53004 * 110.03399 * 238.59128 * 16 9 7 19 19 C 1.55163 * 103.10036 * 218.47808 * 4 2 1 20 20 C 1.55122 * 101.48627 * 35.28132 * 19 4 2 21 21 N 1.47022 * 109.88391 * 121.17723 * 2 1 3 22 22 C 1.36936 * 125.64746 * 298.32288 * 21 2 1 23 23 H 1.07999 * 119.99961 * 359.97438 * 22 21 2 24 24 C 1.38813 * 120.00004 * 179.97438 * 22 21 2 25 25 N 1.31615 * 120.00083 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99778 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46785 * 90.00408 * 26 24 22 28 28 H 1.48499 * 109.46980 * 209.99963 * 26 24 22 29 29 H 1.48498 * 109.47603 * 330.00289 * 26 24 22 30 30 H 1.09000 * 109.47355 * 181.01078 * 1 2 3 31 31 H 1.08998 * 109.47462 * 301.01376 * 1 2 3 32 32 H 1.09005 * 109.47377 * 61.01271 * 1 2 3 33 33 H 0.97005 * 119.99794 * 22.55546 * 6 4 2 34 34 H 1.09000 * 109.47229 * 300.06733 * 10 9 7 35 35 H 1.09003 * 109.46535 * 60.06223 * 10 9 7 36 36 H 1.08994 * 109.47408 * 180.02562 * 10 9 7 37 37 H 1.09005 * 110.48452 * 145.59839 * 11 9 7 38 38 H 1.09000 * 110.60423 * 23.01233 * 11 9 7 39 39 H 1.09004 * 110.75904 * 203.74351 * 12 11 9 40 40 H 1.09000 * 110.91774 * 80.45025 * 12 11 9 41 41 H 1.08996 * 109.47259 * 63.24658 * 15 13 12 42 42 H 1.09006 * 109.47061 * 183.24262 * 15 13 12 43 43 H 1.09000 * 109.47417 * 303.24420 * 15 13 12 44 44 H 1.09004 * 109.47073 * 176.75099 * 17 16 9 45 45 H 1.08993 * 109.47554 * 296.74875 * 17 16 9 46 46 H 1.08996 * 109.47278 * 56.76052 * 17 16 9 47 47 H 1.09005 * 109.46807 * 301.38374 * 18 16 9 48 48 H 1.09005 * 109.46574 * 61.37991 * 18 16 9 49 49 H 1.08993 * 109.47448 * 181.37971 * 18 16 9 50 50 H 1.09001 * 111.00442 * 153.48843 * 19 4 2 51 51 H 1.08999 * 111.00614 * 277.33951 * 19 4 2 52 52 H 1.09001 * 110.42058 * 204.29357 * 20 19 4 53 53 H 1.09001 * 110.30232 * 82.08828 * 20 19 4 54 54 H 0.96999 * 120.00170 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0548 -0.7477 -1.2438 5 1 1.3039 -1.4414 -1.6221 6 7 2.4554 0.1993 -2.2873 7 6 2.5055 -0.1975 -3.5742 8 8 2.2184 -1.3385 -3.8687 9 6 2.9171 0.7769 -4.6477 10 6 2.0868 2.0575 -4.5389 11 6 2.7268 0.1405 -6.0401 12 6 4.1255 -0.4222 -6.3949 13 6 5.0816 0.6591 -5.8328 14 1 5.1589 1.4972 -6.5253 15 6 6.4637 0.0622 -5.5602 16 6 4.4142 1.1065 -4.5159 17 6 5.0174 0.3413 -3.3363 18 6 4.6041 2.6117 -4.3173 19 6 3.2869 -1.5167 -0.6979 20 6 2.8145 -1.8805 0.7341 21 7 2.0300 -0.7157 1.1829 22 6 1.8050 -0.3591 2.4857 23 1 1.2149 0.5167 2.7116 24 6 2.3353 -1.1234 3.5160 25 7 3.0548 -2.1905 3.2407 26 14 2.0289 -0.6365 5.2932 27 1 0.7881 -1.2920 5.7791 28 1 3.1772 -1.0685 6.1298 29 1 1.8777 0.8380 5.3836 30 1 -0.3634 -1.0275 0.0181 31 1 -0.3634 0.5295 0.8807 32 1 -0.3634 0.4980 -0.8990 33 1 2.6846 1.1120 -2.0519 34 1 1.0304 1.8168 -4.6578 35 1 2.2480 2.5129 -3.5618 36 1 2.3912 2.7552 -5.3190 37 1 2.4238 0.8950 -6.7662 38 1 1.9918 -0.6632 -5.9973 39 1 4.2415 -0.5168 -7.4746 40 1 4.2953 -1.3807 -5.9043 41 1 6.9038 -0.2784 -6.4974 42 1 7.1053 0.8211 -5.1122 43 1 6.3669 -0.7813 -4.8766 44 1 6.0887 0.5363 -3.2864 45 1 4.5450 0.6696 -2.4105 46 1 4.8486 -0.7269 -3.4716 47 1 4.1718 3.1470 -5.1627 48 1 4.1073 2.9223 -3.3980 49 1 5.6681 2.8379 -4.2495 50 1 3.4811 -2.4126 -1.2877 51 1 4.1664 -0.8735 -0.6663 52 1 3.6716 -2.0358 1.3894 53 1 2.1890 -2.7729 0.7108 54 1 3.4257 -2.7243 3.9607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088899734.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:35 Heat of formation + Delta-G solvation = -41.286312 kcal Electronic energy + Delta-G solvation = -30252.329216 eV Core-core repulsion = 26609.403414 eV Total energy + Delta-G solvation = -3642.925802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.25350 -39.96584 -38.63643 -35.71403 -34.27680 -33.62190 -32.91026 -32.05269 -30.47016 -29.05967 -28.44974 -26.50659 -25.82050 -24.99044 -24.51125 -22.87055 -21.88640 -21.52510 -20.54668 -19.13152 -18.70160 -17.57189 -17.42373 -16.72974 -16.44005 -16.25162 -15.71568 -15.55102 -15.28834 -14.84617 -14.53367 -14.42500 -14.25337 -14.11311 -14.01266 -13.85673 -13.69130 -13.30014 -13.24161 -13.21122 -12.95379 -12.78406 -12.65545 -12.58734 -12.46779 -12.15613 -12.09300 -12.06988 -11.98697 -11.96131 -11.67967 -11.58121 -11.55941 -11.43677 -11.31708 -11.26629 -11.06797 -10.73959 -10.50897 -9.88669 -8.90427 -7.74779 -5.19990 1.48159 1.49737 1.58205 1.73222 2.18830 2.52735 3.35785 3.43360 3.52802 3.56301 3.71607 3.85736 3.95271 4.07232 4.20565 4.22168 4.29066 4.37742 4.38524 4.47670 4.48302 4.56544 4.61334 4.67130 4.70004 4.78656 4.79662 4.83254 4.89274 4.92843 4.94188 4.97149 5.03659 5.06308 5.11721 5.12319 5.21251 5.22445 5.26180 5.30322 5.31988 5.36171 5.41161 5.48928 5.50682 5.58243 5.59211 5.64944 5.66862 5.79215 6.29791 6.63611 7.10821 7.34136 7.78707 8.42687 9.27188 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021301 B = 0.003348 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.158833 B = 8361.072304 C = 8633.162277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.152 3.848 3 H 0.052 0.948 4 C 0.154 3.846 5 H 0.072 0.928 6 N -0.704 5.704 7 C 0.531 3.469 8 O -0.586 6.586 9 C -0.073 4.073 10 C -0.141 4.141 11 C -0.106 4.106 12 C -0.119 4.119 13 C -0.080 4.080 14 H 0.098 0.902 15 C -0.146 4.146 16 C -0.046 4.046 17 C -0.152 4.152 18 C -0.140 4.140 19 C -0.134 4.134 20 C 0.159 3.841 21 N -0.612 5.612 22 C -0.227 4.227 23 H 0.086 0.914 24 C -0.068 4.068 25 N -0.951 5.951 26 Si 0.978 3.022 27 H -0.291 1.291 28 H -0.296 1.296 29 H -0.266 1.266 30 H 0.033 0.967 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.409 0.591 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.029 0.971 47 H 0.079 0.921 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.058 0.942 51 H 0.070 0.930 52 H 0.077 0.923 53 H -0.019 1.019 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.552 12.712 -21.007 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.046 3.954 3 H 0.069 0.931 4 C 0.048 3.952 5 H 0.091 0.909 6 N -0.355 5.355 7 C 0.319 3.681 8 O -0.466 6.466 9 C -0.076 4.076 10 C -0.198 4.198 11 C -0.144 4.144 12 C -0.157 4.157 13 C -0.098 4.098 14 H 0.116 0.884 15 C -0.203 4.203 16 C -0.046 4.046 17 C -0.209 4.209 18 C -0.197 4.197 19 C -0.174 4.174 20 C 0.033 3.967 21 N -0.337 5.337 22 C -0.356 4.356 23 H 0.104 0.896 24 C -0.260 4.260 25 N -0.601 5.601 26 Si 0.807 3.193 27 H -0.218 1.218 28 H -0.223 1.223 29 H -0.190 1.190 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.247 0.753 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.049 0.951 47 H 0.098 0.902 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.076 0.924 51 H 0.088 0.912 52 H 0.095 0.905 53 H -0.001 1.001 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.385 11.870 -20.990 24.350 hybrid contribution -0.193 -0.563 1.608 1.714 sum 3.193 11.307 -19.382 22.665 Atomic orbital electron populations 1.22122 0.96645 1.00575 1.01202 1.21176 0.93447 0.94989 0.85822 0.93081 1.21648 0.95904 0.90888 0.86779 0.90939 1.46030 1.68752 1.14811 1.05956 1.20983 0.74891 0.88629 0.83575 1.90651 1.50937 1.22238 1.82727 1.21573 0.97294 0.95171 0.93561 1.22079 0.98702 0.94887 1.04100 1.22345 0.97913 1.00122 0.93975 1.22521 0.94481 0.97741 1.00950 1.22045 0.94201 0.98088 0.95471 0.88404 1.21881 0.96299 1.00636 1.01468 1.21145 0.90808 0.97154 0.95505 1.22280 1.01869 0.98725 0.98013 1.22053 1.02385 0.92356 1.02887 1.23179 0.97813 0.99636 0.96761 1.21686 0.95656 0.87735 0.91633 1.44698 1.59675 1.28477 1.00866 1.19406 1.26411 1.08089 0.81703 0.89619 1.25605 1.00791 0.97691 1.01930 1.70048 1.40377 1.18983 1.30720 0.85077 0.76466 0.78076 0.79705 1.21807 1.22285 1.19041 0.94825 0.93260 0.91132 0.75307 0.92879 0.91084 0.88522 0.88551 0.92793 0.90095 0.94085 0.92137 0.91760 0.94031 0.91149 0.92432 0.95146 0.90180 0.91930 0.91987 0.92355 0.91163 0.90470 1.00099 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.13 71.98 0.66 -4.64 16 2 C 0.15 5.99 3.48 45.34 0.16 6.15 16 3 H 0.05 1.87 7.70 -2.38 -0.02 1.85 16 4 C 0.15 5.61 2.79 46.18 0.13 5.73 16 5 H 0.07 2.95 7.33 -2.39 -0.02 2.93 16 6 N -0.70 -19.80 3.50 -436.91 -1.53 -21.33 16 7 C 0.53 15.28 4.64 87.66 0.41 15.68 16 8 O -0.59 -22.19 15.15 -3.03 -0.05 -22.24 16 9 C -0.07 -1.44 0.81 -52.20 -0.04 -1.48 16 10 C -0.14 -1.99 7.02 71.98 0.51 -1.49 16 11 C -0.11 -2.09 5.65 31.67 0.18 -1.91 16 12 C -0.12 -2.27 6.33 31.88 0.20 -2.07 16 13 C -0.08 -1.24 2.90 -9.72 -0.03 -1.26 16 14 H 0.10 1.12 7.85 -2.39 -0.02 1.11 16 15 C -0.15 -2.33 7.97 71.98 0.57 -1.76 16 16 C -0.05 -0.78 0.86 -51.46 -0.04 -0.82 16 17 C -0.15 -3.40 5.99 71.98 0.43 -2.97 16 18 C -0.14 -1.66 7.20 71.98 0.52 -1.14 16 19 C -0.13 -5.48 6.79 32.06 0.22 -5.26 16 20 C 0.16 8.10 5.89 86.93 0.51 8.61 16 21 N -0.61 -30.80 3.13 -667.84 -2.09 -32.89 16 22 C -0.23 -12.38 9.89 84.03 0.83 -11.54 16 23 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 24 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 25 N -0.95 -56.97 10.09 21.65 0.22 -56.76 16 26 Si 0.98 45.33 29.55 68.60 2.03 47.35 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 29 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.82 8.04 -2.39 -0.02 1.80 16 32 H 0.07 2.08 8.14 -2.38 -0.02 2.07 16 33 H 0.41 9.46 6.53 -92.70 -0.61 8.85 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.90 5.91 -2.39 -0.01 0.89 16 36 H 0.10 0.89 6.61 -2.39 -0.02 0.88 16 37 H 0.10 1.36 7.85 -2.38 -0.02 1.34 16 38 H 0.05 1.39 6.96 -2.39 -0.02 1.37 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.04 1.03 8.06 -2.39 -0.02 1.01 16 41 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.06 0.90 7.77 -2.38 -0.02 0.88 16 43 H 0.04 0.83 6.54 -2.39 -0.02 0.82 16 44 H 0.07 1.41 6.66 -2.38 -0.02 1.40 16 45 H 0.06 1.37 5.60 -2.39 -0.01 1.36 16 46 H 0.03 0.86 6.87 -2.39 -0.02 0.84 16 47 H 0.08 0.67 6.61 -2.38 -0.02 0.65 16 48 H 0.06 0.73 6.86 -2.38 -0.02 0.71 16 49 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 51 H 0.07 2.74 7.99 -2.39 -0.02 2.72 16 52 H 0.08 4.45 5.87 -2.39 -0.01 4.43 16 53 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 54 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -68.61 390.45 4.52 -64.09 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.26 Total: 25.30 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 5.67 Total: -3.52 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -3.40 Total: -110.98 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.05 Total: -22.24 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -68.61 4.52 -64.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088899734.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.803 kcal (2) G-P(sol) polarization free energy of solvation -68.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds