Wall clock time and date at job start Tue Mar 31 2020 14:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47352 * 2 1 4 4 O 1.21275 * 120.00052 * 0.02562 * 3 2 1 5 5 N 1.34770 * 119.99652 * 179.97438 * 3 2 1 6 6 C 1.46925 * 120.63591 * 359.97438 * 5 3 2 7 7 C 1.53194 * 108.77661 * 126.41308 * 6 5 3 8 8 C 1.53109 * 109.33021 * 54.63469 * 7 6 5 9 9 C 1.53036 * 109.50477 * 298.65929 * 8 7 6 10 10 H 1.09002 * 109.49886 * 301.37799 * 9 8 7 11 11 C 1.52998 * 109.49372 * 181.31299 * 9 8 7 12 12 C 1.53002 * 109.46818 * 175.06532 * 11 9 8 13 13 H 1.09001 * 109.47277 * 305.00149 * 12 11 9 14 14 N 1.46496 * 109.47483 * 64.99937 * 12 11 9 15 15 C 1.36936 * 120.00520 * 205.00034 * 14 12 11 16 16 H 1.07995 * 119.99876 * 0.02562 * 15 14 12 17 17 C 1.38812 * 120.00221 * 180.02562 * 15 14 12 18 18 N 1.31623 * 119.99783 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00052 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46908 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47083 * 119.99896 * 19 17 15 22 22 H 1.48495 * 109.46911 * 239.99672 * 19 17 15 23 23 C 1.52997 * 109.47350 * 185.00316 * 12 11 9 24 24 C 1.54274 * 110.02900 * 297.16713 * 23 12 11 25 25 C 1.54896 * 104.19344 * 217.10285 * 24 23 12 26 26 C 1.54891 * 102.74737 * 37.94120 * 25 24 23 27 27 C 1.53879 * 110.03532 * 179.97438 * 23 12 11 28 28 C 1.46931 * 120.62942 * 179.97438 * 5 3 2 29 29 H 1.09003 * 109.46821 * 300.00490 * 1 2 3 30 30 H 1.09008 * 109.46886 * 59.99858 * 1 2 3 31 31 H 1.08996 * 109.47301 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46993 * 240.00032 * 2 1 3 33 33 H 1.09000 * 109.46763 * 120.00439 * 2 1 3 34 34 H 1.08995 * 109.58986 * 246.19918 * 6 5 3 35 35 H 1.09003 * 109.58612 * 6.63013 * 6 5 3 36 36 H 1.09002 * 109.49873 * 174.58798 * 7 6 5 37 37 H 1.08999 * 109.49823 * 294.65566 * 7 6 5 38 38 H 1.08997 * 109.50059 * 178.62868 * 8 7 6 39 39 H 1.09003 * 109.44365 * 58.65544 * 8 7 6 40 40 H 1.08991 * 109.47789 * 295.06366 * 11 9 8 41 41 H 1.09000 * 109.47206 * 55.06843 * 11 9 8 42 42 H 0.97003 * 119.99464 * 25.00119 * 14 12 11 43 43 H 0.96999 * 119.99501 * 180.02562 * 18 17 15 44 44 H 1.08997 * 110.02154 * 58.60389 * 23 12 11 45 45 H 1.08995 * 110.48714 * 335.78077 * 24 23 12 46 46 H 1.09000 * 110.48460 * 98.43068 * 24 23 12 47 47 H 1.08997 * 110.75742 * 279.62982 * 25 24 23 48 48 H 1.09001 * 110.75112 * 156.25651 * 25 24 23 49 49 H 1.09002 * 110.48628 * 203.37490 * 26 25 24 50 50 H 1.09001 * 110.48499 * 80.73419 * 26 25 24 51 51 H 1.08998 * 110.02844 * 238.56767 * 27 23 12 52 52 H 1.09000 * 110.03076 * 359.95045 * 27 23 12 53 53 H 1.09004 * 109.58377 * 113.79779 * 28 5 3 54 54 H 1.09003 * 109.70376 * 353.44826 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2444 2.3426 0.0005 5 7 3.3575 1.6669 0.0005 6 6 4.3244 0.5608 0.0017 7 6 5.2978 0.7555 -1.1652 8 6 5.9326 2.1454 -1.0691 9 6 4.8410 3.2136 -1.1664 10 1 4.3055 3.1017 -2.1091 11 6 5.4790 4.6028 -1.1032 12 6 4.4033 5.6683 -1.3236 13 1 3.8832 5.4711 -2.2610 14 7 3.4449 5.6313 -0.2163 15 6 2.1663 6.0849 -0.4018 16 1 1.8642 6.4696 -1.3646 17 6 1.2583 6.0502 0.6476 18 7 1.6264 5.5808 1.8210 19 14 -0.4861 6.6684 0.3943 20 1 -0.6456 7.1406 -1.0046 21 1 -1.4452 5.5655 0.6574 22 1 -0.7541 7.7908 1.3288 23 6 5.0586 7.0495 -1.3849 24 6 5.7389 7.3718 -0.0382 25 6 5.4920 8.8882 0.1587 26 6 4.0543 9.0741 -0.3868 27 6 3.9876 8.1318 -1.6071 28 6 3.8626 3.0467 0.0000 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.8765 0.5589 0.9415 35 1 3.7970 -0.3858 -0.1166 36 1 6.0777 -0.0046 -1.1191 37 1 4.7580 0.6662 -2.1080 38 1 6.6439 2.2777 -1.8843 39 1 6.4515 2.2422 -0.1154 40 1 5.9387 4.7475 -0.1256 41 1 6.2399 4.6888 -1.8788 42 1 3.7162 5.2853 0.6485 43 1 0.9918 5.5563 2.5542 44 1 5.7918 7.0793 -2.1909 45 1 5.2773 6.8023 0.7683 46 1 6.8074 7.1630 -0.0911 47 1 6.2043 9.4742 -0.4222 48 1 5.5420 9.1537 1.2147 49 1 3.8934 10.1075 -0.6938 50 1 3.3206 8.7794 0.3635 51 1 4.2018 8.6871 -2.5202 52 1 3.0010 7.6730 -1.6721 53 1 4.3768 3.2479 0.9398 54 1 3.0316 3.7422 -0.1180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098795657.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:29 Heat of formation + Delta-G solvation = -56.696760 kcal Electronic energy + Delta-G solvation = -30417.908484 eV Core-core repulsion = 26774.314434 eV Total energy + Delta-G solvation = -3643.594050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.14400 -39.89706 -38.36596 -36.18607 -34.74743 -33.63927 -33.15048 -31.79051 -30.39346 -29.35353 -27.74866 -26.79662 -25.62887 -24.49444 -23.41438 -22.39100 -21.48753 -20.77386 -20.01901 -19.52280 -18.95621 -17.97283 -16.89338 -16.61321 -16.54727 -16.36310 -15.86081 -15.73289 -15.28420 -15.10466 -14.82245 -14.65555 -14.33961 -14.04589 -13.92730 -13.80923 -13.58540 -13.30191 -13.19994 -12.91475 -12.86741 -12.65537 -12.59616 -12.37223 -12.18936 -12.04165 -11.93565 -11.82190 -11.76264 -11.74404 -11.64567 -11.53936 -11.48324 -11.26498 -11.17492 -10.97694 -10.76145 -10.55031 -10.40650 -9.35476 -8.64559 -7.78309 -4.95727 1.39168 1.44452 1.48826 1.90934 2.31794 2.64617 3.60959 3.71926 3.81249 3.93493 3.97546 4.05516 4.08536 4.16255 4.18478 4.21374 4.26019 4.30655 4.47295 4.56913 4.57598 4.66433 4.71082 4.78395 4.80777 4.86884 4.93162 4.94907 4.95804 4.99467 5.01077 5.05220 5.08677 5.13626 5.15827 5.17604 5.21581 5.28104 5.33627 5.35097 5.39079 5.41591 5.51250 5.59723 5.64885 5.70415 5.75893 5.83870 5.89080 5.98621 6.42997 6.74762 7.53411 7.53873 8.29067 8.50866 9.44629 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010703 B = 0.005878 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.531418 B = 4762.359911 C = 6878.875495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.481 3.519 4 O -0.577 6.577 5 N -0.615 5.615 6 C 0.097 3.903 7 C -0.127 4.127 8 C -0.111 4.111 9 C -0.082 4.082 10 H 0.048 0.952 11 C -0.106 4.106 12 C 0.173 3.827 13 H 0.029 0.971 14 N -0.707 5.707 15 C -0.199 4.199 16 H 0.065 0.935 17 C -0.052 4.052 18 N -0.949 5.949 19 Si 0.932 3.068 20 H -0.273 1.273 21 H -0.314 1.314 22 H -0.298 1.298 23 C -0.099 4.099 24 C -0.104 4.104 25 C -0.115 4.115 26 C -0.114 4.114 27 C -0.122 4.122 28 C 0.095 3.905 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.375 0.625 43 H 0.237 0.763 44 H 0.077 0.923 45 H 0.043 0.957 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.051 0.949 49 H 0.059 0.941 50 H 0.032 0.968 51 H 0.056 0.944 52 H 0.058 0.942 53 H 0.029 0.971 54 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.235 -11.192 -6.951 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.169 4.169 3 C 0.270 3.730 4 O -0.456 6.456 5 N -0.348 5.348 6 C -0.025 4.025 7 C -0.165 4.165 8 C -0.148 4.148 9 C -0.102 4.102 10 H 0.066 0.934 11 C -0.145 4.145 12 C 0.064 3.936 13 H 0.047 0.953 14 N -0.348 5.348 15 C -0.331 4.331 16 H 0.082 0.918 17 C -0.246 4.246 18 N -0.601 5.601 19 Si 0.766 3.234 20 H -0.197 1.197 21 H -0.243 1.243 22 H -0.226 1.226 23 C -0.120 4.120 24 C -0.141 4.141 25 C -0.152 4.152 26 C -0.152 4.152 27 C -0.159 4.159 28 C -0.028 4.028 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.112 0.888 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.210 0.790 43 H 0.046 0.954 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.090 0.910 47 H 0.097 0.903 48 H 0.070 0.930 49 H 0.078 0.922 50 H 0.051 0.949 51 H 0.074 0.926 52 H 0.076 0.924 53 H 0.047 0.953 54 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.667 -10.635 -7.054 17.981 hybrid contribution -1.665 0.710 0.747 1.959 sum 11.002 -9.924 -6.306 16.103 Atomic orbital electron populations 1.21518 0.94218 1.02405 1.01102 1.21671 0.97562 0.91646 1.06019 1.21734 0.82335 0.93036 0.75893 1.90850 1.56022 1.48350 1.50370 1.48381 1.05613 1.08083 1.72700 1.22032 0.91198 0.89734 0.99522 1.21900 0.98931 0.97757 0.97872 1.21600 0.96818 0.93808 1.02612 1.21309 0.95991 0.95733 0.97134 0.93352 1.21784 0.97476 0.92801 1.02389 1.20533 0.89642 0.92970 0.90449 0.95321 1.42672 1.07874 1.73930 1.10336 1.19159 0.88502 1.30592 0.94880 0.91767 1.24938 0.99506 1.03749 0.96375 1.69721 1.34015 1.54432 1.01914 0.85648 0.84155 0.76466 0.77092 1.19747 1.24307 1.22623 1.22309 0.96351 0.96224 0.97129 1.22220 0.99168 0.95508 0.97250 1.22408 0.96117 0.96890 0.99813 1.22166 0.97178 0.98192 0.97682 1.22245 1.00517 0.96475 0.96709 1.22387 1.00730 0.83574 0.96128 0.94914 0.94248 0.88752 0.86259 0.86898 0.91267 0.87473 0.87846 0.92130 0.90144 0.91821 0.92153 0.89137 0.79046 0.95388 0.90502 0.93794 0.91007 0.90333 0.93032 0.92222 0.94905 0.92572 0.92379 0.95278 0.86549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.20 71.98 0.66 -3.04 16 2 C -0.13 -3.23 4.77 29.85 0.14 -3.09 16 3 C 0.48 18.54 7.70 87.66 0.67 19.21 16 4 O -0.58 -30.56 15.40 -3.01 -0.05 -30.60 16 5 N -0.61 -20.78 2.97 -818.98 -2.43 -23.21 16 6 C 0.10 2.05 6.34 86.36 0.55 2.59 16 7 C -0.13 -2.24 6.08 30.70 0.19 -2.05 16 8 C -0.11 -2.36 5.17 30.64 0.16 -2.20 16 9 C -0.08 -2.51 2.33 -10.73 -0.03 -2.54 16 10 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 11 C -0.11 -3.15 4.11 30.59 0.13 -3.03 16 12 C 0.17 6.45 2.08 44.99 0.09 6.55 16 13 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 14 N -0.71 -33.55 1.85 -322.95 -0.60 -34.15 16 15 C -0.20 -11.01 7.82 84.03 0.66 -10.35 16 16 H 0.06 3.58 6.25 -2.91 -0.02 3.56 16 17 C -0.05 -3.15 5.50 84.86 0.47 -2.68 16 18 N -0.95 -60.08 13.06 21.65 0.28 -59.79 16 19 Si 0.93 50.89 29.55 68.60 2.03 52.92 16 20 H -0.27 -14.12 7.11 99.48 0.71 -13.41 16 21 H -0.31 -18.09 7.11 99.48 0.71 -17.39 16 22 H -0.30 -16.10 7.11 99.48 0.71 -15.40 16 23 C -0.10 -3.29 2.82 -10.07 -0.03 -3.32 16 24 C -0.10 -3.38 5.30 31.67 0.17 -3.21 16 25 C -0.11 -3.61 6.91 31.89 0.22 -3.39 16 26 C -0.11 -4.21 6.83 31.69 0.22 -4.00 16 27 C -0.12 -4.48 5.99 31.34 0.19 -4.29 16 28 C 0.09 3.74 4.26 86.35 0.37 4.11 16 29 H 0.03 1.07 8.10 -2.39 -0.02 1.05 16 30 H 0.04 1.23 8.10 -2.38 -0.02 1.21 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.12 2.15 7.69 -2.39 -0.02 2.13 16 33 H 0.11 2.20 7.94 -2.39 -0.02 2.18 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.11 1.60 5.93 -2.39 -0.01 1.59 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 1.83 7.44 -2.39 -0.02 1.82 16 41 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.38 19.49 5.72 -92.71 -0.53 18.96 16 43 H 0.24 15.14 8.31 -92.71 -0.77 14.37 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.04 1.73 6.69 -2.39 -0.02 1.72 16 46 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 52 H 0.06 2.55 4.39 -2.39 -0.01 2.54 16 53 H 0.03 1.22 7.92 -2.38 -0.02 1.21 16 54 H 0.12 5.96 3.90 -2.39 -0.01 5.95 16 Total: -1.00 -76.04 395.96 4.38 -71.66 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: 0.33 Total: 37.90 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 4.82 Total: -14.72 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -2.75 Total: -117.15 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.05 Total: -30.60 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 2.03 Total: 52.92 kcal Total: -76.04 4.38 -71.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098795657.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.962 kcal (2) G-P(sol) polarization free energy of solvation -76.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds