Wall clock time and date at job start Tue Mar 31 2020 14:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47398 * 2 1 4 4 O 1.21280 * 119.99804 * 359.97438 * 3 2 1 5 5 N 1.34772 * 120.00098 * 179.97438 * 3 2 1 6 6 C 1.46922 * 120.63245 * 0.02562 * 5 3 2 7 7 C 1.53191 * 108.77407 * 233.58540 * 6 5 3 8 8 C 1.53034 * 109.31398 * 305.36089 * 7 6 5 9 9 C 1.53047 * 109.53790 * 61.36422 * 8 7 6 10 10 H 1.08999 * 109.52246 * 58.60472 * 9 8 7 11 11 C 1.52997 * 109.49691 * 178.68125 * 9 8 7 12 12 C 1.53000 * 109.47000 * 184.83755 * 11 9 8 13 13 H 1.09001 * 109.47440 * 305.00554 * 12 11 9 14 14 N 1.46503 * 109.46888 * 65.00367 * 12 11 9 15 15 C 1.36940 * 120.00016 * 210.18673 * 14 12 11 16 16 H 1.08005 * 119.99562 * 6.08227 * 15 14 12 17 17 C 1.38807 * 119.99964 * 186.07920 * 15 14 12 18 18 N 1.31618 * 119.99994 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99848 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47099 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46773 * 120.00084 * 19 17 15 22 22 H 1.48496 * 109.47152 * 239.99847 * 19 17 15 23 23 C 1.52999 * 109.47147 * 185.00075 * 12 11 9 24 24 C 1.54263 * 110.03275 * 180.58800 * 23 12 11 25 25 C 1.54962 * 104.16264 * 217.13894 * 24 23 12 26 26 C 1.54892 * 102.77593 * 37.88964 * 25 24 23 27 27 C 1.53876 * 110.03182 * 63.37442 * 23 12 11 28 28 C 1.46928 * 120.62899 * 179.97438 * 5 3 2 29 29 H 1.09001 * 109.47431 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47142 * 300.00852 * 1 2 3 31 31 H 1.09008 * 109.46970 * 60.00023 * 1 2 3 32 32 H 1.08999 * 109.47196 * 239.99926 * 2 1 3 33 33 H 1.09004 * 109.46981 * 119.99471 * 2 1 3 34 34 H 1.09003 * 109.58454 * 353.37171 * 6 5 3 35 35 H 1.09001 * 109.59018 * 113.65505 * 6 5 3 36 36 H 1.09007 * 109.49948 * 65.31815 * 7 6 5 37 37 H 1.09008 * 109.49826 * 185.37774 * 7 6 5 38 38 H 1.08995 * 109.46262 * 301.34515 * 8 7 6 39 39 H 1.08997 * 109.46487 * 181.38370 * 8 7 6 40 40 H 1.09000 * 109.47067 * 64.84020 * 11 9 8 41 41 H 1.08996 * 109.47740 * 304.83943 * 11 9 8 42 42 H 0.96997 * 120.00205 * 30.19035 * 14 12 11 43 43 H 0.97008 * 119.99697 * 179.97438 * 18 17 15 44 44 H 1.08995 * 110.01981 * 301.98139 * 23 12 11 45 45 H 1.09008 * 110.48756 * 335.78724 * 24 23 12 46 46 H 1.08998 * 110.48774 * 98.42965 * 24 23 12 47 47 H 1.08995 * 110.72339 * 279.57450 * 25 24 23 48 48 H 1.09006 * 110.76635 * 156.22122 * 25 24 23 49 49 H 1.09007 * 110.48583 * 203.40822 * 26 25 24 50 50 H 1.08997 * 110.59892 * 80.82280 * 26 25 24 51 51 H 1.08998 * 110.03459 * 238.57215 * 27 23 12 52 52 H 1.09009 * 110.03185 * 359.95022 * 27 23 12 53 53 H 1.08997 * 109.58942 * 6.63328 * 28 5 3 54 54 H 1.09004 * 109.58697 * 246.19787 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3574 1.6670 0.0005 6 6 4.3244 0.5609 0.0005 7 6 5.2967 0.7560 1.1681 8 6 5.9312 2.1453 1.0717 9 6 4.8399 3.2141 1.1680 10 1 4.3035 3.1031 2.1104 11 6 5.4785 4.6030 1.1046 12 6 4.4029 5.6692 1.3216 13 1 3.5991 5.5269 0.5992 14 7 3.8655 5.5514 2.6795 15 6 2.5672 5.9039 2.9350 16 1 1.9110 6.1749 2.1211 17 6 2.0946 5.9131 4.2401 18 7 2.8944 5.5833 5.2320 19 14 0.3233 6.3933 4.5887 20 1 -0.3622 6.7172 3.3118 21 1 -0.3747 5.2628 5.2518 22 1 0.2986 7.5812 5.4795 23 6 5.0165 7.0582 1.1348 24 6 3.9457 8.1444 1.3654 25 6 4.2830 9.2373 0.3199 26 6 4.7211 8.4084 -0.9131 27 6 5.5097 7.2261 -0.3131 28 6 3.8624 3.0468 0.0000 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.7968 -0.3856 0.1186 35 1 4.8755 0.5572 -0.9399 36 1 4.7561 0.6675 2.1105 37 1 6.0765 -0.0044 1.1233 38 1 6.4508 2.2419 0.1185 39 1 6.6418 2.2775 1.8875 40 1 5.9402 4.7463 0.1276 41 1 6.2380 4.6897 1.8815 42 1 4.4294 5.2237 3.3975 43 1 2.5642 5.5901 6.1441 44 1 5.8447 7.1968 1.8297 45 1 2.9487 7.7412 1.1874 46 1 4.0210 8.5459 2.3759 47 1 5.0995 9.8682 0.6711 48 1 3.4021 9.8366 0.0892 49 1 5.3617 9.0029 -1.5644 50 1 3.8509 8.0476 -1.4614 51 1 6.5771 7.4470 -0.3208 52 1 5.3127 6.3176 -0.8824 53 1 3.0301 3.7406 0.1178 54 1 4.3777 3.2469 -0.9395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098795658.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:32 Heat of formation + Delta-G solvation = -78.720256 kcal Electronic energy + Delta-G solvation = -29654.202520 eV Core-core repulsion = 26009.653460 eV Total energy + Delta-G solvation = -3644.549060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.26699 -39.86938 -38.48906 -36.41758 -34.91558 -33.71037 -33.28163 -32.11252 -30.37532 -29.24343 -27.88887 -26.89183 -25.77786 -24.44737 -23.83411 -22.17194 -21.50486 -20.81720 -20.30718 -19.76059 -19.02155 -18.18980 -17.12254 -16.79815 -16.65032 -16.26512 -16.02306 -15.78934 -15.39008 -15.11790 -15.00718 -14.74170 -14.45862 -14.16705 -14.05846 -13.82031 -13.59150 -13.47820 -13.42319 -13.07152 -12.92560 -12.73026 -12.64290 -12.38583 -12.17658 -12.07888 -12.03148 -11.96570 -11.91681 -11.82062 -11.76555 -11.66083 -11.51177 -11.39797 -11.27621 -11.21314 -10.88672 -10.78813 -10.63246 -9.54652 -8.88771 -7.91855 -5.14463 1.36607 1.38645 1.47108 1.68469 2.12607 2.54391 3.41394 3.58543 3.73153 3.81082 3.91726 3.99284 4.00819 4.05683 4.13394 4.17339 4.23522 4.26005 4.37053 4.42347 4.51672 4.59882 4.66249 4.69645 4.72586 4.79893 4.84506 4.86934 4.89723 4.91727 4.93941 4.95210 4.98861 5.03063 5.05019 5.09030 5.16426 5.18502 5.23104 5.31194 5.32357 5.37555 5.41730 5.48430 5.50887 5.57864 5.64269 5.67197 5.71876 5.76253 6.32862 6.51099 7.26912 7.38703 8.17390 8.39518 9.31895 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.008649 B = 0.005126 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.523327 B = 5461.532427 C = 6993.660196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C 0.491 3.509 4 O -0.598 6.598 5 N -0.613 5.613 6 C 0.103 3.897 7 C -0.133 4.133 8 C -0.109 4.109 9 C -0.088 4.088 10 H 0.036 0.964 11 C -0.107 4.107 12 C 0.180 3.820 13 H 0.032 0.968 14 N -0.722 5.722 15 C -0.199 4.199 16 H 0.057 0.943 17 C -0.074 4.074 18 N -0.967 5.967 19 Si 0.946 3.054 20 H -0.278 1.278 21 H -0.298 1.298 22 H -0.291 1.291 23 C -0.103 4.103 24 C -0.102 4.102 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.111 4.111 28 C 0.122 3.878 29 H 0.092 0.908 30 H 0.031 0.969 31 H 0.046 0.954 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.370 0.630 43 H 0.246 0.754 44 H 0.050 0.950 45 H 0.039 0.961 46 H 0.029 0.971 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.083 0.917 50 H 0.057 0.943 51 H 0.075 0.925 52 H 0.070 0.930 53 H 0.048 0.952 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.568 -11.578 -16.411 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.282 3.718 4 O -0.479 6.479 5 N -0.345 5.345 6 C -0.018 4.018 7 C -0.171 4.171 8 C -0.146 4.146 9 C -0.107 4.107 10 H 0.054 0.946 11 C -0.145 4.145 12 C 0.071 3.929 13 H 0.050 0.950 14 N -0.360 5.360 15 C -0.332 4.332 16 H 0.075 0.925 17 C -0.266 4.266 18 N -0.619 5.619 19 Si 0.778 3.222 20 H -0.203 1.203 21 H -0.226 1.226 22 H -0.218 1.218 23 C -0.124 4.124 24 C -0.140 4.140 25 C -0.161 4.161 26 C -0.155 4.155 27 C -0.149 4.149 28 C 0.000 4.000 29 H 0.111 0.889 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.146 0.854 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.061 0.939 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.078 0.922 42 H 0.202 0.798 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.101 0.899 50 H 0.075 0.925 51 H 0.094 0.906 52 H 0.089 0.911 53 H 0.066 0.934 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.980 -11.055 -16.470 21.774 hybrid contribution -1.355 0.737 1.537 2.177 sum 7.625 -10.318 -14.933 19.687 Atomic orbital electron populations 1.21547 0.93977 1.02651 1.01352 1.21710 0.97804 0.91243 1.06409 1.21753 0.81984 0.93221 0.74878 1.90711 1.56368 1.48758 1.52050 1.48322 1.05834 1.07971 1.72364 1.22088 0.90692 0.89207 0.99828 1.21929 0.99335 0.97952 0.97921 1.21562 0.96563 0.93483 1.03037 1.21308 0.96304 0.95835 0.97298 0.94551 1.21820 0.97274 0.92918 1.02525 1.20592 0.93764 0.92620 0.85885 0.95006 1.42476 1.10144 1.77374 1.06035 1.19326 0.88745 1.33983 0.91100 0.92534 1.25219 1.00558 1.04862 0.95979 1.69783 1.35670 1.58062 0.98427 0.85444 0.82235 0.77104 0.77463 1.20266 1.22627 1.21802 1.22336 0.96843 0.96464 0.96734 1.22144 0.98472 0.96030 0.97367 1.22553 1.00669 0.97128 0.95758 1.22324 0.99792 0.96643 0.96777 1.22199 0.99950 0.98630 0.94162 1.21540 0.97069 0.82964 0.98473 0.88898 0.94982 0.93446 0.85392 0.87119 0.87320 0.88736 0.93861 0.87507 0.89592 0.91905 0.88905 0.92247 0.79835 0.94510 0.93145 0.94258 0.95237 0.91189 0.92096 0.89880 0.92463 0.90600 0.91130 0.93361 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.20 71.98 0.66 -2.45 16 2 C -0.13 -2.65 4.77 29.85 0.14 -2.51 16 3 C 0.49 15.70 7.70 87.66 0.67 16.37 16 4 O -0.60 -26.54 15.39 -3.03 -0.05 -26.59 16 5 N -0.61 -16.70 2.97 -818.85 -2.43 -19.13 16 6 C 0.10 1.65 6.34 86.36 0.55 2.20 16 7 C -0.13 -2.36 6.08 30.67 0.19 -2.17 16 8 C -0.11 -2.32 5.17 30.62 0.16 -2.17 16 9 C -0.09 -2.72 2.28 -10.70 -0.02 -2.75 16 10 H 0.04 1.52 7.62 -2.39 -0.02 1.50 16 11 C -0.11 -3.28 4.11 30.59 0.13 -3.15 16 12 C 0.18 7.11 1.56 44.99 0.07 7.18 16 13 H 0.03 1.40 6.36 -2.39 -0.02 1.38 16 14 N -0.72 -36.84 4.31 -322.93 -1.39 -38.23 16 15 C -0.20 -11.59 8.41 84.03 0.71 -10.88 16 16 H 0.06 3.39 7.10 -2.91 -0.02 3.37 16 17 C -0.07 -4.54 5.50 84.86 0.47 -4.07 16 18 N -0.97 -61.52 13.07 21.65 0.28 -61.24 16 19 Si 0.95 50.42 29.55 68.60 2.03 52.44 16 20 H -0.28 -14.46 7.11 99.48 0.71 -13.75 16 21 H -0.30 -16.00 7.11 99.48 0.71 -15.29 16 22 H -0.29 -15.21 7.11 99.48 0.71 -14.51 16 23 C -0.10 -3.65 2.69 -10.07 -0.03 -3.68 16 24 C -0.10 -4.05 5.36 31.69 0.17 -3.88 16 25 C -0.12 -3.69 6.91 31.91 0.22 -3.47 16 26 C -0.12 -2.99 6.83 31.67 0.22 -2.77 16 27 C -0.11 -2.93 5.86 31.32 0.18 -2.75 16 28 C 0.12 3.85 5.33 86.37 0.46 4.31 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.03 0.91 8.10 -2.39 -0.02 0.89 16 31 H 0.05 1.18 8.10 -2.38 -0.02 1.16 16 32 H 0.13 1.57 7.94 -2.39 -0.02 1.55 16 33 H 0.11 1.80 7.69 -2.39 -0.02 1.79 16 34 H 0.11 1.16 5.93 -2.39 -0.01 1.15 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.09 2.23 6.57 -2.39 -0.02 2.22 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 42 H 0.37 20.40 7.87 -92.71 -0.73 19.67 16 43 H 0.25 15.29 8.31 -92.70 -0.77 14.52 16 44 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.04 1.77 6.40 -2.38 -0.02 1.76 16 46 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 49 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 50 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 52 H 0.07 1.73 6.59 -2.38 -0.02 1.71 16 53 H 0.05 2.03 5.61 -2.39 -0.01 2.02 16 54 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -78.92 403.04 3.50 -75.42 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: 0.12 Total: 33.98 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 4.94 Total: -16.65 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -3.54 Total: -118.60 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.05 Total: -26.59 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.03 Total: 52.44 kcal Total: -78.92 3.50 -75.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098795658.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.304 kcal (2) G-P(sol) polarization free energy of solvation -78.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds