Wall clock time and date at job start Tue Mar 31 2020 14:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46772 * 2 1 4 4 O 1.21281 * 120.00027 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99621 * 180.02562 * 3 2 1 6 6 C 1.46922 * 120.63386 * 0.02562 * 5 3 2 7 7 C 1.53198 * 108.77322 * 233.58769 * 6 5 3 8 8 C 1.53037 * 109.31031 * 305.36095 * 7 6 5 9 9 C 1.53040 * 109.53631 * 61.37056 * 8 7 6 10 10 H 1.08996 * 109.52549 * 58.60094 * 9 8 7 11 11 C 1.53005 * 109.49526 * 178.68368 * 9 8 7 12 12 C 1.52997 * 109.47130 * 184.83460 * 11 9 8 13 13 H 1.09007 * 109.47062 * 54.99843 * 12 11 9 14 14 N 1.46500 * 109.47254 * 294.99820 * 12 11 9 15 15 C 1.36933 * 119.99833 * 147.62893 * 14 12 11 16 16 H 1.08001 * 120.00347 * 353.89659 * 15 14 12 17 17 C 1.38811 * 119.99537 * 173.61484 * 15 14 12 18 18 N 1.31621 * 119.99974 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00226 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47217 * 90.00032 * 19 17 15 21 21 H 1.48504 * 109.47291 * 209.99424 * 19 17 15 22 22 H 1.48493 * 109.47461 * 329.99925 * 19 17 15 23 23 C 1.52999 * 109.47142 * 174.99616 * 12 11 9 24 24 C 1.54270 * 110.03202 * 301.01851 * 23 12 11 25 25 C 1.54892 * 104.19155 * 217.10432 * 24 23 12 26 26 C 1.54894 * 102.75076 * 37.94631 * 25 24 23 27 27 C 1.53881 * 110.03251 * 183.85455 * 23 12 11 28 28 C 1.46930 * 120.62823 * 179.97438 * 5 3 2 29 29 H 1.08995 * 109.47039 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47199 * 299.99773 * 1 2 3 31 31 H 1.09004 * 109.47269 * 59.99923 * 1 2 3 32 32 H 1.08995 * 109.47199 * 240.00227 * 2 1 3 33 33 H 1.08990 * 109.47384 * 119.99918 * 2 1 3 34 34 H 1.09002 * 109.58372 * 353.37161 * 6 5 3 35 35 H 1.08989 * 109.59023 * 113.65510 * 6 5 3 36 36 H 1.09000 * 109.49666 * 65.31633 * 7 6 5 37 37 H 1.09001 * 109.49454 * 185.37624 * 7 6 5 38 38 H 1.08998 * 109.46083 * 301.34314 * 8 7 6 39 39 H 1.09004 * 109.45652 * 181.38522 * 8 7 6 40 40 H 1.08995 * 109.47166 * 64.83019 * 11 9 8 41 41 H 1.09001 * 109.46818 * 304.83490 * 11 9 8 42 42 H 0.96995 * 119.99879 * 327.63095 * 14 12 11 43 43 H 0.96997 * 120.00226 * 179.97438 * 18 17 15 44 44 H 1.08999 * 110.01654 * 62.46236 * 23 12 11 45 45 H 1.09000 * 110.48459 * 335.78179 * 24 23 12 46 46 H 1.08998 * 110.48256 * 98.43118 * 24 23 12 47 47 H 1.08997 * 110.75862 * 279.62296 * 25 24 23 48 48 H 1.09009 * 110.75318 * 156.25977 * 25 24 23 49 49 H 1.08999 * 110.47902 * 203.37735 * 26 25 24 50 50 H 1.08993 * 110.48612 * 80.73357 * 26 25 24 51 51 H 1.08998 * 110.02764 * 238.57312 * 27 23 12 52 52 H 1.09003 * 110.03009 * 359.97438 * 27 23 12 53 53 H 1.09000 * 109.58441 * 6.62672 * 28 5 3 54 54 H 1.08993 * 109.58771 * 246.20211 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.3244 0.5610 -0.0017 7 6 5.2977 0.7559 1.1653 8 6 5.9319 2.1453 1.0687 9 6 4.8407 3.2139 1.1664 10 1 4.3051 3.1025 2.1091 11 6 5.4791 4.6029 1.1027 12 6 4.4036 5.6690 1.3210 13 1 3.8824 5.4727 2.2580 14 7 3.4464 5.6312 0.2126 15 6 2.1312 5.9420 0.4329 16 1 1.7791 6.1185 1.4386 17 6 1.2516 6.0358 -0.6369 18 7 -0.0125 6.3350 -0.4252 19 14 1.8621 5.7375 -2.3769 20 1 1.7230 4.2970 -2.7101 21 1 1.0582 6.5454 -3.3289 22 1 3.2901 6.1326 -2.4751 23 6 5.0593 7.0500 1.3818 24 6 6.0891 7.0960 2.5296 25 6 5.9510 8.5268 3.1065 26 6 4.4255 8.7825 3.0252 27 6 4.0016 8.1223 1.6970 28 6 3.8623 3.0470 -0.0011 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.7970 -0.3855 0.1166 35 1 4.8746 0.5577 -0.9425 36 1 4.7578 0.6670 2.1080 37 1 6.0774 -0.0045 1.1195 38 1 6.4508 2.2421 0.1150 39 1 6.6433 2.2772 1.8840 40 1 5.9400 4.7465 0.1254 41 1 6.2393 4.6893 1.8791 42 1 3.7444 5.3861 -0.6773 43 1 -0.6271 6.4009 -1.1728 44 1 5.5466 7.2737 0.4328 45 1 5.8466 6.3531 3.2895 46 1 7.0962 6.9353 2.1451 47 1 6.4963 9.2447 2.4938 48 1 6.2938 8.5610 4.1407 49 1 4.2188 9.8524 3.0024 50 1 3.9145 8.3120 3.8651 51 1 3.9763 8.8668 0.9013 52 1 3.0211 7.6588 1.8062 53 1 3.0300 3.7407 0.1175 54 1 4.3767 3.2474 -0.9409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098795659.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:36 Heat of formation + Delta-G solvation = -63.294783 kcal Electronic energy + Delta-G solvation = -30175.258754 eV Core-core repulsion = 26531.378592 eV Total energy + Delta-G solvation = -3643.880161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.23520 -39.92322 -38.44291 -36.59447 -34.82593 -33.72939 -33.30564 -32.09396 -30.88211 -29.30250 -27.82714 -26.85187 -25.53194 -24.48588 -23.34490 -22.25399 -21.47075 -21.17630 -20.48768 -19.60559 -19.19895 -18.07475 -17.02395 -16.70235 -16.60244 -16.33383 -16.09029 -15.92759 -15.35658 -15.04196 -14.94222 -14.72492 -14.45843 -14.13131 -14.08280 -14.00896 -13.72882 -13.54310 -13.30105 -12.97317 -12.91888 -12.64915 -12.57586 -12.50514 -12.20677 -12.06943 -11.99927 -11.89106 -11.82177 -11.79037 -11.76057 -11.62638 -11.46587 -11.40470 -11.37811 -11.10398 -11.06384 -10.66884 -10.54868 -9.45441 -9.01978 -7.94200 -5.21365 1.25058 1.33239 1.37675 1.81180 2.22163 2.50968 3.42735 3.60342 3.65983 3.75912 3.91338 3.99470 4.02186 4.07572 4.08835 4.15415 4.20888 4.23032 4.37964 4.44850 4.51533 4.61743 4.62276 4.71194 4.74784 4.80548 4.85348 4.88365 4.90780 4.91517 4.97274 4.99485 5.02029 5.08931 5.10606 5.14130 5.17145 5.22694 5.27066 5.29210 5.32453 5.38851 5.45243 5.56186 5.57800 5.62180 5.66443 5.75926 5.78810 5.91560 6.29775 6.63328 7.18129 7.43445 7.93628 8.08990 9.29060 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010702 B = 0.005565 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.608946 B = 5029.986011 C = 6764.369136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.478 3.522 4 O -0.580 6.580 5 N -0.617 5.617 6 C 0.096 3.904 7 C -0.128 4.128 8 C -0.110 4.110 9 C -0.082 4.082 10 H 0.048 0.952 11 C -0.111 4.111 12 C 0.182 3.818 13 H 0.035 0.965 14 N -0.737 5.737 15 C -0.189 4.189 16 H 0.051 0.949 17 C -0.051 4.051 18 N -0.984 5.984 19 Si 0.933 3.067 20 H -0.298 1.298 21 H -0.304 1.304 22 H -0.248 1.248 23 C -0.100 4.100 24 C -0.109 4.109 25 C -0.115 4.115 26 C -0.124 4.124 27 C -0.119 4.119 28 C 0.081 3.919 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.360 0.640 43 H 0.248 0.752 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.060 0.940 50 H 0.054 0.946 51 H 0.034 0.966 52 H 0.044 0.956 53 H 0.108 0.892 54 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.945 -13.458 4.794 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.268 3.732 4 O -0.459 6.459 5 N -0.350 5.350 6 C -0.025 4.025 7 C -0.166 4.166 8 C -0.148 4.148 9 C -0.101 4.101 10 H 0.066 0.934 11 C -0.150 4.150 12 C 0.074 3.926 13 H 0.053 0.947 14 N -0.380 5.380 15 C -0.320 4.320 16 H 0.069 0.931 17 C -0.242 4.242 18 N -0.636 5.636 19 Si 0.763 3.237 20 H -0.226 1.226 21 H -0.231 1.231 22 H -0.172 1.172 23 C -0.121 4.121 24 C -0.147 4.147 25 C -0.153 4.153 26 C -0.161 4.161 27 C -0.157 4.157 28 C -0.042 4.042 29 H 0.114 0.886 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.126 0.874 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.194 0.806 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.079 0.921 50 H 0.073 0.927 51 H 0.053 0.947 52 H 0.063 0.937 53 H 0.125 0.875 54 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 18.362 -12.910 4.898 22.974 hybrid contribution -1.014 0.489 -1.508 1.882 sum 17.348 -12.421 3.390 21.604 Atomic orbital electron populations 1.21532 0.94296 1.02495 1.01104 1.21680 0.97500 0.91376 1.06274 1.21862 0.82339 0.93251 0.75770 1.90902 1.56127 1.48427 1.50463 1.48414 1.05657 1.08111 1.72835 1.22078 0.91095 0.89534 0.99798 1.21898 0.98969 0.97924 0.97805 1.21592 0.96668 0.93487 1.03012 1.21310 0.95965 0.95921 0.96943 0.93367 1.21915 0.97530 0.92517 1.03038 1.20596 0.89061 0.93088 0.89814 0.94683 1.42968 1.05087 1.82342 1.07568 1.18649 0.84812 1.35860 0.92646 0.93124 1.25162 0.95604 1.02938 1.00470 1.69843 1.04447 1.58638 1.30651 0.85735 0.78635 0.76572 0.82718 1.22573 1.23149 1.17219 1.22315 0.95350 0.95882 0.98577 1.22405 0.98504 0.97020 0.96764 1.22463 0.94515 0.96991 1.01316 1.22368 0.97398 0.99712 0.96653 1.22108 0.99550 0.97384 0.96687 1.22492 1.00696 0.83832 0.97183 0.88582 0.94458 0.94867 0.86469 0.86114 0.87436 0.90670 0.92317 0.87647 0.91267 0.89931 0.91615 0.88212 0.80642 0.94307 0.92435 0.91345 0.89909 0.91255 0.90242 0.92111 0.92680 0.94688 0.93711 0.87459 0.94033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.20 71.98 0.66 -3.11 16 2 C -0.13 -3.13 4.77 29.85 0.14 -2.99 16 3 C 0.48 18.06 7.70 87.66 0.67 18.73 16 4 O -0.58 -30.82 15.40 -3.03 -0.05 -30.86 16 5 N -0.62 -19.74 2.97 -818.83 -2.43 -22.18 16 6 C 0.10 1.82 6.34 86.37 0.55 2.37 16 7 C -0.13 -2.01 6.08 30.67 0.19 -1.83 16 8 C -0.11 -2.06 5.17 30.62 0.16 -1.90 16 9 C -0.08 -2.34 2.34 -10.70 -0.03 -2.36 16 10 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 11 C -0.11 -3.04 4.26 30.59 0.13 -2.91 16 12 C 0.18 6.68 1.70 44.99 0.08 6.76 16 13 H 0.03 1.46 8.00 -2.38 -0.02 1.44 16 14 N -0.74 -34.50 2.38 -322.94 -0.77 -35.27 16 15 C -0.19 -11.13 7.90 84.03 0.66 -10.47 16 16 H 0.05 3.35 7.33 -2.91 -0.02 3.33 16 17 C -0.05 -3.22 5.50 84.86 0.47 -2.76 16 18 N -0.98 -68.55 13.97 21.65 0.30 -68.24 16 19 Si 0.93 50.80 27.67 68.60 1.90 52.70 16 20 H -0.30 -16.82 7.11 99.48 0.71 -16.12 16 21 H -0.30 -16.80 7.11 99.48 0.71 -16.09 16 22 H -0.25 -11.94 6.62 99.48 0.66 -11.28 16 23 C -0.10 -3.29 2.71 -10.07 -0.03 -3.32 16 24 C -0.11 -2.60 5.15 31.67 0.16 -2.43 16 25 C -0.12 -2.67 6.91 31.89 0.22 -2.45 16 26 C -0.12 -3.72 6.83 31.67 0.22 -3.50 16 27 C -0.12 -4.58 6.12 31.32 0.19 -4.39 16 28 C 0.08 2.99 4.34 86.38 0.38 3.36 16 29 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.20 8.10 -2.39 -0.02 1.18 16 31 H 0.03 1.08 8.10 -2.38 -0.02 1.06 16 32 H 0.12 2.10 7.94 -2.39 -0.02 2.08 16 33 H 0.12 2.10 7.69 -2.39 -0.02 2.09 16 34 H 0.11 1.41 5.93 -2.39 -0.01 1.40 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.10 2.10 6.86 -2.39 -0.02 2.08 16 42 H 0.36 16.79 4.66 -92.71 -0.43 16.35 16 43 H 0.25 16.81 8.31 -92.71 -0.77 16.04 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.07 1.58 7.59 -2.39 -0.02 1.57 16 46 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 47 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 49 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.04 2.13 5.35 -2.39 -0.01 2.12 16 53 H 0.11 5.24 3.64 -2.39 -0.01 5.23 16 54 H 0.04 1.51 8.01 -2.39 -0.02 1.49 16 Total: -1.00 -85.36 395.87 4.15 -81.21 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: 0.37 Total: 35.85 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 4.82 Total: -13.20 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -2.90 Total: -125.70 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.05 Total: -30.86 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 1.90 Total: 52.70 kcal Total: -85.36 4.15 -81.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098795659.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.915 kcal (2) G-P(sol) polarization free energy of solvation -85.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds