Wall clock time and date at job start Tue Mar 31 2020 15:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 110.43744 * 2 1 4 4 C 1.54890 * 110.48739 * 122.68990 * 2 1 3 5 5 C 1.54886 * 102.75232 * 156.61906 * 4 2 1 6 6 C 1.54269 * 104.19428 * 322.05300 * 5 4 2 7 7 C 1.52999 * 110.07102 * 142.91409 * 6 5 4 8 8 C 1.50699 * 110.03244 * 264.32620 * 6 5 4 9 9 O 1.21272 * 120.00359 * 5.28054 * 8 6 5 10 10 N 1.34786 * 119.99844 * 185.27297 * 8 6 5 11 11 C 1.46492 * 119.99677 * 175.07912 * 10 8 6 12 12 C 1.53007 * 109.46763 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61321 * 174.99934 * 12 11 10 14 14 C 1.53783 * 87.17323 * 140.02486 * 13 12 11 15 15 N 1.46501 * 113.61146 * 219.97738 * 14 13 12 16 16 C 1.36935 * 119.99626 * 204.99700 * 15 14 13 17 17 H 1.07998 * 120.00420 * 359.97438 * 16 15 14 18 18 C 1.38818 * 119.99663 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99955 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00032 * 359.97438 * 18 16 15 21 21 H 1.48491 * 109.47124 * 90.00376 * 20 18 16 22 22 H 1.48509 * 109.46755 * 210.00377 * 20 18 16 23 23 H 1.48504 * 109.46962 * 329.99828 * 20 18 16 24 24 C 1.53780 * 87.07995 * 334.52340 * 14 13 12 25 25 C 1.53881 * 106.59835 * 23.61320 * 6 5 4 26 26 C 1.52991 * 110.03415 * 119.28108 * 25 6 5 27 27 C 1.52995 * 110.03095 * 240.66533 * 25 6 5 28 28 H 1.08995 * 109.47599 * 182.53963 * 1 2 3 29 29 H 1.08999 * 109.47126 * 302.54416 * 1 2 3 30 30 H 1.09005 * 109.46789 * 62.53588 * 1 2 3 31 31 H 1.09007 * 110.75311 * 274.93376 * 4 2 1 32 32 H 1.09002 * 110.75634 * 38.11564 * 4 2 1 33 33 H 1.08998 * 110.48557 * 203.38171 * 5 4 2 34 34 H 1.08996 * 110.48790 * 80.72888 * 5 4 2 35 35 H 1.09009 * 109.46995 * 182.11535 * 7 6 5 36 36 H 1.08997 * 109.47462 * 302.12072 * 7 6 5 37 37 H 1.09002 * 109.46603 * 62.12536 * 7 6 5 38 38 H 0.96996 * 119.99587 * 355.07810 * 10 8 6 39 39 H 1.08995 * 109.47780 * 60.00252 * 11 10 8 40 40 H 1.09003 * 109.47278 * 299.99385 * 11 10 8 41 41 H 1.08999 * 112.90617 * 43.75020 * 12 11 10 42 42 H 1.08995 * 113.61622 * 25.43331 * 13 12 11 43 43 H 1.08999 * 113.61462 * 254.61368 * 13 12 11 44 44 H 1.08998 * 113.61589 * 89.07221 * 14 13 12 45 45 H 0.97003 * 119.99825 * 24.99663 * 15 14 13 46 46 H 0.96998 * 119.99945 * 179.97438 * 19 18 16 47 47 H 1.08997 * 113.61606 * 139.98263 * 24 14 13 48 48 H 1.09001 * 113.61809 * 270.80670 * 24 14 13 49 49 H 1.09000 * 109.47076 * 59.99969 * 26 25 6 50 50 H 1.09003 * 109.47452 * 179.97438 * 26 25 6 51 51 H 1.09001 * 109.47281 * 300.00324 * 26 25 6 52 52 H 1.09001 * 109.47324 * 54.35080 * 27 25 6 53 53 H 1.08997 * 109.47329 * 174.34711 * 27 25 6 54 54 H 1.08998 * 109.47379 * 294.34781 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0721 -0.7836 1.2211 5 6 3.4907 -1.1990 0.7584 6 6 3.3165 -1.5397 -0.7361 7 6 4.5462 -1.0856 -1.5249 8 6 3.1127 -3.0231 -0.9070 9 8 3.0093 -3.7373 0.0676 10 7 3.0452 -3.5560 -2.1432 11 6 2.9556 -5.0085 -2.3107 12 6 2.8926 -5.3470 -3.8015 13 6 2.9191 -6.8569 -4.0920 14 6 1.8707 -6.5879 -5.1845 15 7 0.8230 -7.6093 -5.2566 16 6 0.1454 -7.8133 -6.4289 17 1 0.3830 -7.2210 -7.3002 18 6 -0.8478 -8.7808 -6.4971 19 7 -1.4988 -8.9773 -7.6241 20 14 -1.2592 -9.8049 -4.9900 21 1 -2.3209 -9.1256 -4.2048 22 1 -1.7393 -11.1437 -5.4172 23 1 -0.0444 -9.9595 -4.1499 24 6 1.4637 -5.3439 -4.3773 25 6 2.0698 -0.7773 -1.2183 26 6 2.4506 0.1969 -2.3348 27 6 1.0143 -1.7639 -1.7215 28 1 -0.3634 -1.0266 0.0455 29 1 -0.3633 0.5528 0.8663 30 1 -0.3633 0.4740 -0.9119 31 1 2.1252 -0.1409 2.1000 32 1 1.4561 -1.6602 1.4221 33 1 3.8315 -2.0740 1.3119 34 1 4.1897 -0.3720 0.8821 35 1 4.3970 -1.2968 -2.5839 36 1 4.6925 -0.0145 -1.3851 37 1 5.4253 -1.6221 -1.1679 38 1 3.0560 -2.9776 -2.9218 39 1 2.0569 -5.3766 -1.8159 40 1 3.8331 -5.4802 -1.8682 41 1 3.6045 -4.7753 -4.3968 42 1 2.5457 -7.4665 -3.2692 43 1 3.8742 -7.2100 -4.4809 44 1 2.3037 -6.3547 -6.1572 45 1 0.6094 -8.1410 -4.4740 46 1 -2.1925 -9.6536 -7.6718 47 1 1.2443 -4.4741 -4.9965 48 1 0.6914 -5.5395 -3.6333 49 1 2.8773 -0.3573 -3.1708 50 1 1.5615 0.7313 -2.6697 51 1 3.1842 0.9105 -1.9598 52 1 0.8049 -2.4995 -0.9449 53 1 0.0997 -1.2239 -1.9664 54 1 1.3861 -2.2712 -2.6117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100733914.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:11 Heat of formation + Delta-G solvation = -39.742367 kcal Electronic energy + Delta-G solvation = -29029.357549 eV Core-core repulsion = 25386.498697 eV Total energy + Delta-G solvation = -3642.858852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.24197 -40.20879 -39.00787 -36.19906 -35.15729 -33.94489 -33.15128 -32.64756 -29.36499 -29.08498 -27.88782 -26.47858 -25.65582 -24.99988 -24.54412 -22.87046 -22.19413 -21.08978 -20.48475 -19.43122 -19.10420 -17.54682 -17.33322 -16.86624 -16.54468 -16.34215 -16.10547 -15.79593 -15.32024 -15.00769 -14.78029 -14.61033 -14.33438 -14.28848 -14.17472 -13.94914 -13.84202 -13.35891 -13.27178 -13.22896 -13.15598 -13.04750 -12.69143 -12.55294 -12.46075 -12.17624 -12.16657 -12.01507 -11.92213 -11.73004 -11.70040 -11.59935 -11.55907 -11.35234 -11.28913 -11.13262 -11.09060 -10.88013 -10.52028 -9.94951 -9.27638 -8.03991 -5.36025 1.36100 1.38240 1.45447 1.70059 2.24706 2.46433 3.26605 3.41070 3.50984 3.57972 3.62433 3.71269 3.83898 4.04826 4.09066 4.19112 4.25470 4.29181 4.34342 4.35073 4.38563 4.45096 4.53211 4.55579 4.66000 4.74209 4.76479 4.81911 4.86254 4.90958 4.92783 4.94059 4.96630 5.02694 5.03734 5.08296 5.16620 5.19776 5.21268 5.23790 5.27053 5.28597 5.32899 5.36992 5.47164 5.50142 5.55459 5.61949 5.66484 5.77400 6.22278 6.61068 7.06966 7.31044 7.85484 8.02884 9.17642 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.002724 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.595222 B =10277.618408 C =10592.444418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 H 0.096 0.904 4 C -0.120 4.120 5 C -0.107 4.107 6 C -0.074 4.074 7 C -0.139 4.139 8 C 0.527 3.473 9 O -0.589 6.589 10 N -0.714 5.714 11 C 0.138 3.862 12 C -0.096 4.096 13 C -0.137 4.137 14 C 0.146 3.854 15 N -0.745 5.745 16 C -0.230 4.230 17 H 0.061 0.939 18 C -0.065 4.065 19 N -0.984 5.984 20 Si 0.951 3.049 21 H -0.282 1.282 22 H -0.295 1.295 23 H -0.253 1.253 24 C -0.153 4.153 25 C -0.047 4.047 26 C -0.141 4.141 27 C -0.152 4.152 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.412 0.588 39 H 0.045 0.955 40 H 0.063 0.937 41 H 0.120 0.880 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.364 0.636 46 H 0.257 0.743 47 H 0.066 0.934 48 H 0.061 0.939 49 H 0.067 0.933 50 H 0.059 0.941 51 H 0.077 0.923 52 H 0.028 0.972 53 H 0.068 0.932 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.869 24.324 16.120 32.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 H 0.114 0.886 4 C -0.158 4.158 5 C -0.145 4.145 6 C -0.078 4.078 7 C -0.196 4.196 8 C 0.315 3.685 9 O -0.469 6.469 10 N -0.367 5.367 11 C 0.014 3.986 12 C -0.115 4.115 13 C -0.176 4.176 14 C 0.038 3.962 15 N -0.386 5.386 16 C -0.361 4.361 17 H 0.079 0.921 18 C -0.256 4.256 19 N -0.635 5.635 20 Si 0.779 3.221 21 H -0.208 1.208 22 H -0.222 1.222 23 H -0.178 1.178 24 C -0.193 4.193 25 C -0.047 4.047 26 C -0.198 4.198 27 C -0.209 4.209 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.250 0.750 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.197 0.803 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.096 0.904 52 H 0.047 0.953 53 H 0.087 0.913 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.757 23.802 16.545 32.086 hybrid contribution -1.020 -1.255 0.310 1.647 sum 12.737 22.547 16.855 30.898 Atomic orbital electron populations 1.21887 0.95205 1.01165 1.02047 1.22056 0.95458 0.99418 0.93039 0.88601 1.22523 0.95765 0.99111 0.98360 1.22349 0.97955 1.01433 0.92717 1.21567 0.98329 0.89377 0.98481 1.22056 0.94398 1.03201 0.99922 1.20931 0.74049 0.91110 0.82434 1.90654 1.51902 1.63894 1.40465 1.46122 1.74470 1.07826 1.08299 1.21188 1.00856 0.80776 0.95805 1.22510 0.97898 0.97014 0.94072 1.23351 0.99851 0.95716 0.98682 1.21927 0.88689 0.88764 0.96857 1.42812 1.42495 1.43121 1.10133 1.19139 1.12020 1.14693 0.90262 0.92109 1.25478 0.99260 1.01201 0.99691 1.69874 1.28275 1.37957 1.27372 0.85466 0.78673 0.78096 0.79899 1.20817 1.22225 1.17800 1.23763 0.96021 0.99830 0.99704 1.21157 0.92236 0.94901 0.96440 1.22060 1.02121 0.98534 0.97040 1.22292 0.99752 0.98513 1.00367 0.94020 0.92279 0.91786 0.90319 0.94050 0.92681 0.88778 0.90668 0.88948 0.92940 0.75004 0.93689 0.91840 0.86179 0.90842 0.89976 0.90253 0.80283 0.93396 0.91524 0.92003 0.91436 0.92181 0.90438 0.95312 0.91283 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 7.93 71.98 0.57 -1.50 16 2 C -0.08 -1.08 2.91 -9.72 -0.03 -1.11 16 3 H 0.10 0.94 7.83 -2.39 -0.02 0.92 16 4 C -0.12 -2.00 6.33 31.88 0.20 -1.80 16 5 C -0.11 -1.79 5.67 31.67 0.18 -1.61 16 6 C -0.07 -1.17 0.80 -52.20 -0.04 -1.21 16 7 C -0.14 -1.41 7.03 71.98 0.51 -0.90 16 8 C 0.53 12.16 4.62 87.66 0.40 12.56 16 9 O -0.59 -19.11 15.45 -3.00 -0.05 -19.16 16 10 N -0.71 -13.95 4.00 -463.07 -1.85 -15.80 16 11 C 0.14 3.18 5.52 86.38 0.48 3.66 16 12 C -0.10 -2.11 3.77 -10.17 -0.04 -2.15 16 13 C -0.14 -3.72 7.38 31.12 0.23 -3.49 16 14 C 0.15 5.18 4.48 45.52 0.20 5.38 16 15 N -0.74 -34.44 5.20 -320.44 -1.67 -36.11 16 16 C -0.23 -13.06 10.45 84.04 0.88 -12.18 16 17 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 18 C -0.06 -3.86 5.50 84.86 0.47 -3.39 16 19 N -0.98 -63.45 13.97 21.65 0.30 -63.15 16 20 Si 0.95 46.26 27.74 68.60 1.90 48.16 16 21 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 23 H -0.25 -11.19 6.52 99.48 0.65 -10.54 16 24 C -0.15 -4.47 7.44 31.21 0.23 -4.24 16 25 C -0.05 -0.64 0.86 -51.46 -0.04 -0.68 16 26 C -0.14 -1.23 7.20 71.98 0.52 -0.71 16 27 C -0.15 -2.76 6.00 71.98 0.43 -2.33 16 28 H 0.04 0.75 6.68 -2.39 -0.02 0.73 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.80 7.65 -2.38 -0.02 0.78 16 31 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.04 0.93 8.04 -2.39 -0.02 0.91 16 33 H 0.05 1.24 6.92 -2.39 -0.02 1.22 16 34 H 0.09 1.11 7.85 -2.39 -0.02 1.09 16 35 H 0.07 0.59 6.03 -2.38 -0.01 0.58 16 36 H 0.09 0.58 6.68 -2.39 -0.02 0.57 16 37 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.41 5.93 6.50 -92.71 -0.60 5.33 16 39 H 0.04 1.27 7.86 -2.39 -0.02 1.25 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.07 2.10 8.08 -2.39 -0.02 2.09 16 43 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 44 H 0.08 2.86 8.10 -2.39 -0.02 2.84 16 45 H 0.36 16.45 5.79 -92.71 -0.54 15.91 16 46 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 47 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.06 2.03 7.91 -2.39 -0.02 2.01 16 49 H 0.07 0.50 6.76 -2.39 -0.02 0.49 16 50 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.08 0.46 6.70 -2.39 -0.02 0.44 16 52 H 0.03 0.69 6.85 -2.39 -0.02 0.68 16 53 H 0.07 1.17 6.45 -2.39 -0.02 1.15 16 54 H 0.06 1.13 5.65 -2.39 -0.01 1.11 16 Total: -1.00 -73.35 396.79 3.47 -69.88 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -0.32 Total: 31.87 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 5.15 Total: -15.70 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -3.22 Total: -115.05 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.05 Total: -19.16 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.90 Total: 48.16 kcal Total: -73.35 3.47 -69.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100733914.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.137 kcal (2) G-P(sol) polarization free energy of solvation -73.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds