Wall clock time and date at job start Tue Mar 31 2020 15:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 115.54591 * 2 1 4 4 C 1.53001 * 117.51496 * 145.69870 * 2 1 3 5 5 C 1.52991 * 117.49767 * 214.32790 * 2 1 3 6 6 H 1.08999 * 117.49768 * 144.97484 * 5 2 1 7 7 C 1.53001 * 117.49979 * 359.97438 * 5 2 1 8 8 C 1.50706 * 109.47153 * 174.99950 * 7 5 2 9 9 O 1.21284 * 119.99894 * 0.02562 * 8 7 5 10 10 N 1.34771 * 120.00165 * 180.02562 * 8 7 5 11 11 C 1.46927 * 120.63146 * 180.02562 * 10 8 7 12 12 C 1.53191 * 108.77065 * 233.62596 * 11 10 8 13 13 C 1.53042 * 109.31649 * 305.36041 * 12 11 10 14 14 C 1.52996 * 109.45974 * 181.38841 * 13 12 11 15 15 C 1.52993 * 109.47460 * 60.00164 * 14 13 12 16 16 C 1.53008 * 109.47234 * 300.00223 * 14 13 12 17 17 C 1.52998 * 109.46929 * 180.02562 * 14 13 12 18 18 N 1.46506 * 109.47237 * 179.97438 * 17 14 13 19 19 C 1.36939 * 120.00073 * 179.72302 * 18 17 14 20 20 H 1.08004 * 119.99859 * 0.02562 * 19 18 17 21 21 C 1.38805 * 119.99849 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00056 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00155 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46896 * 90.00225 * 23 21 19 25 25 H 1.48501 * 109.47275 * 210.00265 * 23 21 19 26 26 H 1.48499 * 109.47039 * 330.00065 * 23 21 19 27 27 C 1.53043 * 109.53240 * 61.36785 * 13 12 11 28 28 C 1.46930 * 120.63061 * 0.02562 * 10 8 7 29 29 H 1.08994 * 109.46780 * 205.67230 * 1 2 3 30 30 H 1.09000 * 109.47081 * 325.66925 * 1 2 3 31 31 H 1.08994 * 109.46628 * 85.67039 * 1 2 3 32 32 H 1.08992 * 117.50100 * 359.97438 * 4 2 1 33 33 H 1.09001 * 117.49572 * 214.96720 * 4 2 1 34 34 H 1.08993 * 109.47007 * 55.00177 * 7 5 2 35 35 H 1.08999 * 109.46985 * 294.99625 * 7 5 2 36 36 H 1.09001 * 109.58883 * 113.83894 * 11 10 8 37 37 H 1.08995 * 109.58666 * 353.41347 * 11 10 8 38 38 H 1.09000 * 109.49406 * 185.41320 * 12 11 10 39 39 H 1.08998 * 109.52808 * 65.33601 * 12 11 10 40 40 H 1.08992 * 109.46080 * 301.36350 * 13 12 11 41 41 H 1.09002 * 109.47712 * 179.97438 * 15 14 13 42 42 H 1.08995 * 109.47426 * 300.00241 * 15 14 13 43 43 H 1.09002 * 109.47145 * 59.99821 * 15 14 13 44 44 H 1.09004 * 109.46786 * 300.00139 * 16 14 13 45 45 H 1.08995 * 109.46766 * 60.00302 * 16 14 13 46 46 H 1.09002 * 109.47164 * 180.02562 * 16 14 13 47 47 H 1.09001 * 109.47671 * 60.00109 * 17 14 13 48 48 H 1.08998 * 109.47454 * 300.00107 * 17 14 13 49 49 H 0.97005 * 119.99811 * 0.02562 * 18 17 14 50 50 H 0.97000 * 119.99835 * 179.97438 * 22 21 19 51 51 H 1.09001 * 109.49862 * 58.58699 * 27 13 12 52 52 H 1.09001 * 109.49386 * 178.68068 * 27 13 12 53 53 H 1.08999 * 109.58844 * 246.16243 * 28 10 8 54 54 H 1.09001 * 109.58590 * 6.59219 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1210 0.7647 5 6 2.2365 -1.1207 -0.7653 6 1 3.1711 -0.8745 -1.2691 7 6 1.3588 -2.1560 -1.4715 8 6 2.2301 -3.0965 -2.2638 9 8 3.4344 -2.9531 -2.2632 10 7 1.6710 -4.0969 -2.9730 11 6 2.5072 -5.0221 -3.7499 12 6 2.0002 -5.0496 -5.1952 13 6 0.5090 -5.3936 -5.2021 14 6 0.0069 -5.4560 -6.6460 15 6 0.7821 -6.5317 -7.4094 16 6 0.2206 -4.0988 -7.3194 17 6 -1.4840 -5.7993 -6.6531 18 7 -1.9649 -5.8585 -8.0357 19 6 -3.2765 -6.1570 -8.2923 20 1 -3.9566 -6.3484 -7.4753 21 6 -3.7320 -6.2136 -9.6022 22 7 -4.9926 -6.5010 -9.8489 23 14 -2.5560 -5.8818 -11.0152 24 1 -1.9236 -7.1557 -11.4423 25 1 -3.3049 -5.2943 -12.1550 26 1 -1.5047 -4.9316 -10.5714 27 6 -0.2677 -4.3187 -4.4382 28 6 0.2135 -4.2830 -2.9840 29 1 -0.3633 -0.9262 0.4452 30 1 -0.3633 0.8486 0.5796 31 1 -0.3632 0.0776 -1.0247 32 1 1.6120 -1.8584 1.2683 33 1 3.1721 -0.8750 1.2677 34 1 0.6673 -1.6482 -2.1438 35 1 0.7951 -2.7213 -0.7294 36 1 2.4419 -6.0219 -3.3206 37 1 3.5424 -4.6815 -3.7322 38 1 2.5499 -5.8031 -5.7592 39 1 2.1501 -4.0717 -5.6526 40 1 0.3572 -6.3606 -4.7227 41 1 0.4241 -6.5765 -8.4380 42 1 1.8441 -6.2868 -7.4043 43 1 0.6299 -7.4986 -6.9298 44 1 -0.3317 -3.3324 -6.7754 45 1 1.2826 -3.8539 -7.3143 46 1 -0.1375 -4.1431 -8.3479 47 1 -2.0361 -5.0327 -6.1094 48 1 -1.6366 -6.7660 -6.1733 49 1 -1.3532 -5.6905 -8.7696 50 1 -5.3110 -6.5402 -10.7643 51 1 -0.0965 -3.3473 -4.9021 52 1 -1.3322 -4.5519 -4.4635 53 1 -0.0386 -5.2226 -2.4924 54 1 -0.2646 -3.4548 -2.4611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101570014.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:09 Heat of formation + Delta-G solvation = -36.393657 kcal Electronic energy + Delta-G solvation = -28515.317747 eV Core-core repulsion = 24872.604106 eV Total energy + Delta-G solvation = -3642.713641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.48896 -40.11321 -38.64816 -37.37263 -35.55657 -33.42545 -32.43106 -31.87935 -30.42097 -28.94346 -28.19623 -27.74001 -26.21723 -24.44786 -23.62815 -22.72805 -22.06320 -20.74732 -20.05921 -19.62694 -19.05512 -18.14707 -17.15902 -16.72769 -16.56955 -16.20213 -15.92594 -15.60441 -15.30987 -15.19752 -14.93419 -14.72596 -14.55991 -14.37373 -14.23649 -14.03843 -13.76521 -13.47120 -13.43494 -13.18306 -13.15115 -12.89940 -12.86033 -12.75730 -12.65126 -12.44002 -12.29454 -12.13417 -12.06277 -11.92069 -11.83240 -11.73045 -11.28846 -11.15174 -10.95934 -10.88934 -10.81449 -10.80159 -10.56342 -9.59969 -9.22513 -8.01448 -5.32293 1.35549 1.38191 1.45532 1.65216 2.04147 2.47975 2.86483 3.30353 3.53072 3.58224 3.71022 3.78604 3.82150 3.96660 3.99188 4.03745 4.15877 4.20359 4.29397 4.35888 4.40893 4.44704 4.46917 4.54468 4.61282 4.64193 4.73481 4.82753 4.84692 4.87615 4.93397 4.94734 4.95622 4.99553 5.01239 5.02874 5.05536 5.12257 5.17139 5.20888 5.24434 5.25402 5.33668 5.34968 5.41262 5.47915 5.52430 5.64780 5.68880 5.78952 6.23717 6.45392 7.11104 7.20374 7.89866 8.07525 9.20469 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019895 B = 0.002570 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.061762 B =10891.539128 C =11659.607553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.145 4.145 3 H 0.104 0.896 4 C -0.175 4.175 5 C -0.153 4.153 6 H 0.089 0.911 7 C -0.101 4.101 8 C 0.511 3.489 9 O -0.588 6.588 10 N -0.609 5.609 11 C 0.112 3.888 12 C -0.122 4.122 13 C -0.064 4.064 14 C -0.060 4.060 15 C -0.140 4.140 16 C -0.137 4.137 17 C 0.163 3.837 18 N -0.756 5.756 19 C -0.226 4.226 20 H 0.058 0.942 21 C -0.065 4.065 22 N -0.985 5.985 23 Si 0.947 3.053 24 H -0.279 1.279 25 H -0.296 1.296 26 H -0.254 1.254 27 C -0.135 4.135 28 C 0.108 3.892 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.033 0.967 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.032 0.968 47 H 0.030 0.970 48 H 0.020 0.980 49 H 0.365 0.635 50 H 0.256 0.744 51 H 0.066 0.934 52 H 0.080 0.920 53 H 0.084 0.916 54 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.046 9.370 20.760 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.164 4.164 3 H 0.122 0.878 4 C -0.212 4.212 5 C -0.172 4.172 6 H 0.108 0.892 7 C -0.140 4.140 8 C 0.301 3.699 9 O -0.469 6.469 10 N -0.341 5.341 11 C -0.011 4.011 12 C -0.160 4.160 13 C -0.083 4.083 14 C -0.060 4.060 15 C -0.197 4.197 16 C -0.195 4.195 17 C 0.037 3.963 18 N -0.402 5.402 19 C -0.357 4.357 20 H 0.076 0.924 21 C -0.257 4.257 22 N -0.636 5.636 23 Si 0.775 3.225 24 H -0.205 1.205 25 H -0.223 1.223 26 H -0.178 1.178 27 C -0.173 4.173 28 C -0.014 4.014 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.052 0.948 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.051 0.949 47 H 0.048 0.952 48 H 0.038 0.962 49 H 0.199 0.801 50 H 0.065 0.935 51 H 0.085 0.915 52 H 0.099 0.901 53 H 0.102 0.898 54 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.461 9.387 20.830 28.160 hybrid contribution 0.177 -0.077 -1.470 1.483 sum 16.638 9.310 19.360 27.172 Atomic orbital electron populations 1.21406 0.91565 1.02777 1.02428 1.22495 0.96299 0.94155 1.03408 0.87793 1.23242 1.02716 1.01952 0.93276 1.22055 1.00742 0.99919 0.94454 0.89232 1.21232 0.97556 0.95399 0.99806 1.21148 0.88561 0.81072 0.79099 1.90649 1.17216 1.73536 1.65538 1.48262 1.08392 1.29914 1.47564 1.21595 0.95081 0.93246 0.91155 1.21998 0.95664 1.02607 0.95748 1.21003 0.94527 0.99490 0.93235 1.20657 0.93680 0.95646 0.96039 1.21878 1.00202 0.98349 0.99268 1.21893 1.01571 0.96439 0.99548 1.20917 0.92979 0.97665 0.84705 1.42819 1.07232 1.86020 1.04111 1.19065 0.86727 1.37313 0.92592 0.92416 1.25442 0.97519 1.02941 0.99769 1.69877 1.16009 1.58073 1.19651 0.85520 0.79008 0.78486 0.79466 1.20540 1.22320 1.17847 1.22101 1.00598 0.99581 0.95031 1.21967 0.78143 1.04087 0.97206 0.91661 0.91506 0.91708 0.87757 0.89123 0.86969 0.86743 0.90406 0.90787 0.89528 0.91977 0.90306 0.94754 0.90646 0.92466 0.92359 0.91320 0.94912 0.95185 0.96221 0.80099 0.93475 0.91522 0.90123 0.89779 0.87550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.20 71.99 0.66 -0.50 16 2 C -0.15 -1.82 6.41 -10.79 -0.07 -1.89 16 3 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.18 -2.36 9.82 30.59 0.30 -2.06 16 5 C -0.15 -2.51 5.41 -10.80 -0.06 -2.56 16 6 H 0.09 1.96 7.31 -2.39 -0.02 1.95 16 7 C -0.10 -1.40 3.41 29.85 0.10 -1.30 16 8 C 0.51 10.64 7.70 87.66 0.67 11.31 16 9 O -0.59 -17.22 14.98 -3.04 -0.05 -17.27 16 10 N -0.61 -10.69 2.97 -818.86 -2.43 -13.12 16 11 C 0.11 2.02 6.43 86.36 0.56 2.57 16 12 C -0.12 -2.16 4.65 30.67 0.14 -2.02 16 13 C -0.06 -1.23 1.51 -10.77 -0.02 -1.25 16 14 C -0.06 -1.56 0.33 -52.18 -0.02 -1.58 16 15 C -0.14 -3.62 7.95 71.98 0.57 -3.05 16 16 C -0.14 -3.65 7.60 71.98 0.55 -3.10 16 17 C 0.16 5.76 4.80 86.38 0.41 6.17 16 18 N -0.76 -34.44 4.81 -343.44 -1.65 -36.10 16 19 C -0.23 -12.76 10.47 84.03 0.88 -11.88 16 20 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 21 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 22 N -0.98 -63.21 13.97 21.65 0.30 -62.91 16 23 Si 0.95 45.69 27.73 68.60 1.90 47.59 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.25 -11.09 6.52 99.48 0.65 -10.45 16 27 C -0.14 -2.36 4.65 30.68 0.14 -2.21 16 28 C 0.11 1.42 6.34 86.37 0.55 1.97 16 29 H 0.06 0.51 7.90 -2.39 -0.02 0.49 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.58 7.83 -2.39 -0.02 0.56 16 32 H 0.10 1.16 7.94 -2.39 -0.02 1.15 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.11 1.24 7.31 -2.39 -0.02 1.23 16 35 H 0.11 1.10 7.68 -2.39 -0.02 1.08 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.60 7.00 -2.39 -0.02 1.59 16 38 H 0.09 1.40 6.36 -2.39 -0.02 1.38 16 39 H 0.06 1.22 6.51 -2.39 -0.02 1.20 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.03 1.05 6.86 -2.39 -0.02 1.03 16 42 H 0.07 1.56 6.40 -2.39 -0.02 1.54 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.06 1.51 6.46 -2.38 -0.02 1.49 16 45 H 0.07 1.54 6.46 -2.39 -0.02 1.53 16 46 H 0.03 1.03 6.86 -2.39 -0.02 1.01 16 47 H 0.03 1.07 6.40 -2.39 -0.02 1.05 16 48 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.36 16.13 3.22 -92.70 -0.30 15.83 16 50 H 0.26 15.72 8.31 -92.71 -0.77 14.94 16 51 H 0.07 1.25 6.51 -2.39 -0.02 1.24 16 52 H 0.08 1.53 6.36 -2.39 -0.02 1.52 16 53 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 54 H 0.11 0.94 5.93 -2.39 -0.01 0.93 16 Total: -1.00 -72.70 396.18 4.44 -68.26 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.52 Total: 28.32 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 5.85 Total: -14.77 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -3.78 Total: -112.13 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.05 Total: -17.27 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.90 Total: 47.59 kcal Total: -72.70 4.44 -68.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101570014.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.865 kcal (2) G-P(sol) polarization free energy of solvation -72.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds