Wall clock time and date at job start Tue Mar 31 2020 15:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 115.56240 * 2 1 4 4 C 1.53074 * 117.49130 * 214.29100 * 2 1 3 5 5 C 1.52995 * 59.98514 * 252.51894 * 4 2 1 6 6 H 1.08993 * 117.50380 * 107.50054 * 5 4 2 7 7 C 1.53003 * 117.49721 * 252.50353 * 5 4 2 8 8 C 1.50701 * 109.46918 * 243.74421 * 7 5 4 9 9 O 1.21282 * 120.00258 * 359.97438 * 8 7 5 10 10 N 1.34772 * 119.99883 * 179.97438 * 8 7 5 11 11 C 1.46931 * 120.63173 * 179.97438 * 10 8 7 12 12 C 1.53187 * 108.77858 * 233.63340 * 11 10 8 13 13 C 1.53036 * 109.33909 * 305.34763 * 12 11 10 14 14 C 1.52999 * 109.46063 * 181.40144 * 13 12 11 15 15 C 1.53001 * 109.47013 * 299.99800 * 14 13 12 16 16 C 1.52995 * 109.47121 * 60.00443 * 14 13 12 17 17 C 1.53007 * 109.46960 * 180.02562 * 14 13 12 18 18 N 1.46501 * 109.46735 * 179.97438 * 17 14 13 19 19 C 1.36943 * 120.00012 * 179.97438 * 18 17 14 20 20 H 1.07999 * 119.99516 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00317 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99872 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47135 * 59.99782 * 23 21 19 25 25 H 1.48501 * 109.47215 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47062 * 300.00137 * 23 21 19 27 27 C 1.53109 * 109.50477 * 61.34678 * 13 12 11 28 28 C 1.46925 * 120.63360 * 0.02562 * 10 8 7 29 29 H 1.09004 * 109.47187 * 274.31573 * 1 2 3 30 30 H 1.09003 * 109.46799 * 34.30543 * 1 2 3 31 31 H 1.08994 * 109.47694 * 154.30850 * 1 2 3 32 32 H 1.09001 * 117.51324 * 145.03691 * 4 2 1 33 33 H 1.09004 * 117.51276 * 359.97438 * 4 2 1 34 34 H 1.08993 * 109.47561 * 123.74630 * 7 5 4 35 35 H 1.08999 * 109.46993 * 3.74163 * 7 5 4 36 36 H 1.09004 * 109.58377 * 113.84299 * 11 10 8 37 37 H 1.09007 * 109.58589 * 353.42421 * 11 10 8 38 38 H 1.09002 * 109.49796 * 65.31697 * 12 11 10 39 39 H 1.09000 * 109.49812 * 185.38420 * 12 11 10 40 40 H 1.09003 * 109.46509 * 301.36375 * 13 12 11 41 41 H 1.09001 * 109.46966 * 60.00264 * 15 14 13 42 42 H 1.09002 * 109.46907 * 180.02562 * 15 14 13 43 43 H 1.08997 * 109.47197 * 299.99683 * 15 14 13 44 44 H 1.08995 * 109.47708 * 59.99835 * 16 14 13 45 45 H 1.09002 * 109.47170 * 179.97438 * 16 14 13 46 46 H 1.09001 * 109.46891 * 299.99755 * 16 14 13 47 47 H 1.08995 * 109.47135 * 299.99715 * 17 14 13 48 48 H 1.09001 * 109.46888 * 60.00277 * 17 14 13 49 49 H 0.96998 * 120.00494 * 0.02562 * 18 17 14 50 50 H 0.97000 * 120.00041 * 179.97438 * 22 21 19 51 51 H 1.09002 * 109.48980 * 178.70051 * 27 13 12 52 52 H 1.08999 * 109.51108 * 58.63043 * 27 13 12 53 53 H 1.08995 * 109.58986 * 246.15399 * 28 10 8 54 54 H 1.09003 * 109.58612 * 6.58493 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2366 -1.1219 -0.7650 5 6 2.2364 -1.1211 0.7649 6 1 1.6111 -1.8583 1.2685 7 6 3.5489 -0.7761 1.4714 8 6 4.0227 -1.9687 2.2615 9 8 3.3741 -2.9936 2.2602 10 7 5.1670 -1.8964 2.9697 11 6 5.6416 -3.0506 3.7454 12 6 5.8864 -2.6062 5.1908 13 6 6.8404 -1.4096 5.1985 14 6 7.1144 -0.9854 6.6427 15 6 5.7985 -0.5930 7.3174 16 6 7.7508 -2.1498 7.4042 17 6 8.0677 0.2114 6.6506 18 7 8.3296 0.6179 8.0335 19 6 9.1612 1.6752 8.2906 20 1 9.6235 2.2095 7.4738 21 6 9.4089 2.0607 9.6008 22 7 8.8450 1.4098 10.5961 23 14 10.5427 3.5033 9.9514 24 1 9.9966 4.7283 9.3141 25 1 10.6415 3.7100 11.4187 26 1 11.8918 3.2180 9.4002 27 6 6.2049 -0.2443 4.4352 28 6 5.9633 -0.6617 2.9817 29 1 -0.3634 0.0773 1.0248 30 1 -0.3633 0.8489 -0.5792 31 1 -0.3634 -0.9260 -0.4455 32 1 3.1719 -0.8766 -1.2683 33 1 1.6115 -1.8599 -1.2678 34 1 3.3887 0.0656 2.1451 35 1 4.3017 -0.5095 0.7295 36 1 6.5713 -3.4227 3.3150 37 1 4.8876 -3.8376 3.7278 38 1 4.9396 -2.3196 5.6487 39 1 6.3290 -3.4278 5.7540 40 1 7.7780 -1.6895 4.7183 41 1 5.1190 -1.4453 7.3118 42 1 5.9938 -0.2904 8.3462 43 1 5.3453 0.2367 6.7749 44 1 8.6882 -2.4294 6.9236 45 1 7.9464 -1.8475 8.4330 46 1 7.0713 -3.0021 7.3986 47 1 9.0052 -0.0677 6.1698 48 1 7.6139 1.0409 6.1081 49 1 7.9146 0.1378 8.7670 50 1 9.0184 1.6790 11.5118 51 1 6.8746 0.6153 4.4605 52 1 5.2552 0.0206 4.9000 53 1 6.9193 -0.8387 2.4890 54 1 5.4216 0.1275 2.4603 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101570015.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:13 Heat of formation + Delta-G solvation = -39.880407 kcal Electronic energy + Delta-G solvation = -28248.930092 eV Core-core repulsion = 24606.065255 eV Total energy + Delta-G solvation = -3642.864838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.46189 -40.04382 -38.55386 -37.28928 -35.48713 -33.25229 -32.35761 -31.74574 -30.78963 -28.43931 -28.15886 -27.48160 -26.21912 -24.66334 -23.69841 -22.69904 -21.79703 -21.13238 -19.99371 -19.46286 -18.95616 -17.94797 -17.09801 -16.67850 -16.56997 -16.09321 -15.70682 -15.47605 -15.29691 -15.23930 -15.04398 -14.85522 -14.47696 -14.25805 -14.09523 -13.92975 -13.90072 -13.33614 -13.27283 -13.07631 -13.04315 -12.96914 -12.82113 -12.70464 -12.61441 -12.36784 -12.22453 -12.15850 -12.12101 -11.92364 -11.86411 -11.71524 -11.23624 -11.12494 -10.92214 -10.89491 -10.83042 -10.78933 -10.50483 -9.59320 -8.91160 -7.91366 -5.18084 1.47749 1.50559 1.56587 1.66010 2.04529 2.58585 2.86397 3.41970 3.51929 3.70899 3.72531 3.81066 3.84821 3.96408 4.11064 4.14997 4.22275 4.30183 4.31750 4.39389 4.42164 4.44895 4.48650 4.55156 4.60441 4.64252 4.75740 4.85154 4.86785 4.89296 4.93287 4.94803 4.95916 4.97647 4.99276 5.01858 5.06095 5.14035 5.18217 5.21525 5.25698 5.28022 5.33495 5.36456 5.44799 5.48523 5.51591 5.59050 5.68221 5.71188 6.31613 6.46430 7.21057 7.37938 8.18389 8.40068 9.32288 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019349 B = 0.002361 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.770542 B =11856.040740 C =12651.001732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.144 4.144 3 H 0.119 0.881 4 C -0.174 4.174 5 C -0.154 4.154 6 H 0.088 0.912 7 C -0.103 4.103 8 C 0.511 3.489 9 O -0.589 6.589 10 N -0.609 5.609 11 C 0.113 3.887 12 C -0.123 4.123 13 C -0.063 4.063 14 C -0.055 4.055 15 C -0.131 4.131 16 C -0.134 4.134 17 C 0.160 3.840 18 N -0.742 5.742 19 C -0.239 4.239 20 H 0.075 0.925 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.971 3.029 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.279 1.279 27 C -0.134 4.134 28 C 0.109 3.891 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.028 0.972 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.030 0.970 46 H 0.070 0.930 47 H 0.014 0.986 48 H 0.026 0.974 49 H 0.375 0.625 50 H 0.249 0.751 51 H 0.081 0.919 52 H 0.064 0.936 53 H 0.085 0.915 54 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.535 -5.202 -23.328 26.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 H 0.137 0.863 4 C -0.211 4.211 5 C -0.172 4.172 6 H 0.107 0.893 7 C -0.142 4.142 8 C 0.301 3.699 9 O -0.470 6.470 10 N -0.342 5.342 11 C -0.010 4.010 12 C -0.161 4.161 13 C -0.082 4.082 14 C -0.055 4.055 15 C -0.188 4.188 16 C -0.191 4.191 17 C 0.034 3.966 18 N -0.385 5.385 19 C -0.371 4.371 20 H 0.092 0.908 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.800 3.200 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.205 1.205 27 C -0.172 4.172 28 C -0.013 4.013 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.032 0.968 48 H 0.044 0.956 49 H 0.208 0.792 50 H 0.058 0.942 51 H 0.100 0.900 52 H 0.082 0.918 53 H 0.103 0.897 54 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.750 -5.596 -23.384 26.762 hybrid contribution 0.599 0.439 1.282 1.481 sum -11.150 -5.157 -22.103 25.287 Atomic orbital electron populations 1.21398 0.92651 1.02280 1.01982 1.22542 0.95617 0.94707 1.03355 0.86286 1.23291 1.03142 1.01394 0.93260 1.22084 0.98159 1.02504 0.94477 0.89347 1.21283 0.97142 0.95863 0.99916 1.21159 0.79683 0.89950 0.79089 1.90649 1.56677 1.34155 1.65514 1.48269 1.23301 1.14985 1.47610 1.21584 0.99970 0.88390 0.91045 1.21993 0.99734 0.98534 0.95825 1.21012 0.98779 0.95087 0.93292 1.20587 0.94721 0.94522 0.95679 1.21810 0.96583 1.00914 0.99515 1.21807 1.00376 0.97659 0.99304 1.20923 0.95425 0.94561 0.85675 1.42661 1.55918 1.36705 1.03245 1.19611 1.19082 1.06558 0.91888 0.90753 1.25532 1.03157 1.02742 0.95679 1.69812 1.49666 1.44482 0.98285 0.85240 0.78993 0.79605 0.76112 1.20383 1.22449 1.20507 1.22088 1.01611 0.98416 0.95080 1.21958 0.96652 0.85631 0.97076 0.92463 0.90904 0.92931 0.87633 0.89222 0.86889 0.86466 0.90316 0.90809 0.92202 0.89803 0.90376 0.91815 0.95238 0.92633 0.92839 0.95124 0.91117 0.96792 0.95594 0.79178 0.94202 0.90014 0.91778 0.89660 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 10.19 71.98 0.73 -0.78 16 2 C -0.14 -1.81 6.13 -10.77 -0.07 -1.87 16 3 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 4 C -0.17 -2.37 9.82 30.62 0.30 -2.07 16 5 C -0.15 -2.57 5.13 -10.79 -0.06 -2.62 16 6 H 0.09 2.01 7.31 -2.39 -0.02 1.99 16 7 C -0.10 -1.46 4.33 29.85 0.13 -1.33 16 8 C 0.51 11.04 7.70 87.66 0.67 11.71 16 9 O -0.59 -17.79 14.98 -3.04 -0.05 -17.83 16 10 N -0.61 -11.33 2.97 -818.98 -2.43 -13.76 16 11 C 0.11 2.20 6.43 86.36 0.56 2.76 16 12 C -0.12 -2.47 4.65 30.67 0.14 -2.32 16 13 C -0.06 -1.35 1.51 -10.75 -0.02 -1.37 16 14 C -0.05 -1.61 0.33 -52.18 -0.02 -1.63 16 15 C -0.13 -4.05 7.60 71.98 0.55 -3.50 16 16 C -0.13 -4.10 7.95 71.98 0.57 -3.53 16 17 C 0.16 6.06 4.80 86.38 0.41 6.47 16 18 N -0.74 -36.99 5.00 -343.44 -1.72 -38.71 16 19 C -0.24 -13.25 9.99 84.03 0.84 -12.41 16 20 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 21 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 22 N -0.97 -59.72 13.06 21.65 0.28 -59.44 16 23 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 C -0.13 -2.52 4.65 30.68 0.14 -2.38 16 28 C 0.11 1.51 6.34 86.35 0.55 2.05 16 29 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.66 7.90 -2.39 -0.02 0.64 16 32 H 0.11 1.15 8.03 -2.39 -0.02 1.13 16 33 H 0.09 1.27 8.05 -2.39 -0.02 1.25 16 34 H 0.11 1.27 7.69 -2.39 -0.02 1.25 16 35 H 0.12 1.10 7.68 -2.39 -0.02 1.08 16 36 H 0.08 1.33 8.14 -2.38 -0.02 1.32 16 37 H 0.07 1.71 7.01 -2.38 -0.02 1.69 16 38 H 0.06 1.34 6.51 -2.39 -0.02 1.33 16 39 H 0.08 1.60 6.36 -2.39 -0.02 1.58 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 1.71 6.46 -2.39 -0.02 1.69 16 42 H 0.03 1.11 6.86 -2.39 -0.02 1.09 16 43 H 0.05 1.64 6.47 -2.39 -0.02 1.63 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.03 1.14 6.86 -2.39 -0.02 1.13 16 46 H 0.07 1.79 6.40 -2.39 -0.02 1.77 16 47 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.03 0.96 6.40 -2.39 -0.02 0.95 16 49 H 0.37 20.06 5.36 -92.71 -0.50 19.56 16 50 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 51 H 0.08 1.63 6.36 -2.39 -0.02 1.61 16 52 H 0.06 1.33 6.51 -2.39 -0.02 1.31 16 53 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 54 H 0.11 0.99 5.93 -2.39 -0.01 0.98 16 Total: -1.00 -70.33 401.35 4.40 -65.93 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.38 Total: 32.60 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 5.91 Total: -16.90 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -3.87 Total: -111.91 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.05 Total: -17.83 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -70.33 4.40 -65.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101570015.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.046 kcal (2) G-P(sol) polarization free energy of solvation -70.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds