Wall clock time and date at job start Tue Mar 31 2020 15:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08996 * 115.56536 * 2 1 4 4 C 1.53008 * 117.50119 * 145.68915 * 2 1 3 5 5 C 1.53000 * 59.99900 * 107.48887 * 4 2 1 6 6 H 1.08996 * 117.49704 * 252.48113 * 5 4 2 7 7 C 1.53006 * 117.49497 * 107.49228 * 5 4 2 8 8 C 1.50701 * 109.47023 * 116.38827 * 7 5 4 9 9 O 1.21278 * 120.00081 * 359.97438 * 8 7 5 10 10 N 1.34775 * 119.99805 * 179.97438 * 8 7 5 11 11 C 1.46917 * 120.63287 * 359.72349 * 10 8 7 12 12 C 1.53626 * 108.54780 * 126.36625 * 11 10 8 13 13 C 1.53041 * 109.23856 * 54.85681 * 12 11 10 14 14 C 1.52999 * 109.44819 * 178.50497 * 13 12 11 15 15 C 1.52996 * 109.47494 * 60.05475 * 14 13 12 16 16 C 1.53001 * 109.47301 * 180.02562 * 14 13 12 17 17 C 1.53007 * 109.46679 * 300.05791 * 14 13 12 18 18 N 1.46498 * 109.47017 * 180.02562 * 17 14 13 19 19 C 1.36941 * 119.99786 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00039 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99836 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00049 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 119.99927 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46584 * 90.00077 * 23 21 19 25 25 H 1.48498 * 109.47177 * 209.99787 * 23 21 19 26 26 H 1.48492 * 109.47215 * 330.00154 * 23 21 19 27 27 C 1.53051 * 109.53680 * 298.51111 * 13 12 11 28 28 C 1.46934 * 120.62804 * 180.02562 * 10 8 7 29 29 H 1.09007 * 109.47305 * 205.68621 * 1 2 3 30 30 H 1.09002 * 109.47481 * 325.68774 * 1 2 3 31 31 H 1.09001 * 109.47294 * 85.69147 * 1 2 3 32 32 H 1.08998 * 117.49499 * 0.02562 * 4 2 1 33 33 H 1.08999 * 117.49910 * 214.98097 * 4 2 1 34 34 H 1.08996 * 109.46807 * 236.38629 * 7 5 4 35 35 H 1.09001 * 109.47367 * 356.38740 * 7 5 4 36 36 H 1.08996 * 109.58792 * 246.20084 * 11 10 8 37 37 H 1.08999 * 109.58830 * 6.62238 * 11 10 8 38 38 H 1.09002 * 109.63260 * 294.86916 * 12 11 10 39 39 H 1.08997 * 109.46048 * 174.74417 * 12 11 10 40 40 H 1.08995 * 109.46300 * 58.53568 * 13 12 11 41 41 H 1.09007 * 109.46709 * 60.00699 * 15 14 13 42 42 H 1.09004 * 109.47190 * 180.02562 * 15 14 13 43 43 H 1.08998 * 109.47505 * 300.00494 * 15 14 13 44 44 H 1.09000 * 109.46804 * 59.99584 * 16 14 13 45 45 H 1.09000 * 109.47000 * 179.97438 * 16 14 13 46 46 H 1.09000 * 109.47005 * 299.99809 * 16 14 13 47 47 H 1.08997 * 109.47082 * 299.99980 * 17 14 13 48 48 H 1.08998 * 109.47007 * 60.00310 * 17 14 13 49 49 H 0.97003 * 120.00136 * 359.97438 * 18 17 14 50 50 H 0.97008 * 120.00102 * 180.02562 * 22 21 19 51 51 H 1.08995 * 109.50043 * 301.41535 * 27 13 12 52 52 H 1.09001 * 109.52076 * 181.33615 * 27 13 12 53 53 H 1.08997 * 109.58467 * 353.37535 * 28 10 8 54 54 H 1.09004 * 109.58419 * 113.65823 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2364 -1.1210 -0.7650 6 1 1.6115 -1.8588 -1.2682 7 6 3.5490 -0.7759 -1.4714 8 6 4.0215 -1.9677 -2.2635 9 8 3.3727 -2.9923 -2.2627 10 7 5.1652 -1.8949 -2.9728 11 6 5.9589 -0.6587 -2.9885 12 6 7.4012 -0.9988 -2.5830 13 6 7.9364 -2.1006 -3.5004 14 6 9.3855 -2.4170 -3.1247 15 6 9.4436 -2.8917 -1.6715 16 6 9.9214 -3.5181 -4.0420 17 6 10.2402 -1.1581 -3.2846 18 7 11.6278 -1.4612 -2.9255 19 6 12.5818 -0.4810 -2.9914 20 1 12.3112 0.5156 -3.3077 21 6 13.8965 -0.7680 -2.6506 22 7 14.8135 0.1739 -2.7144 23 14 14.3642 -2.4912 -2.1015 24 1 14.7559 -3.2984 -3.2848 25 1 15.5049 -2.4162 -1.1538 26 1 13.2035 -3.1287 -1.4296 27 6 7.0817 -3.3601 -3.3404 28 6 5.6385 -3.0483 -3.7504 29 1 -0.3634 -0.9262 0.4455 30 1 -0.3634 0.8488 0.5793 31 1 -0.3634 0.0772 -1.0248 32 1 1.6112 -1.8587 1.2679 33 1 3.1715 -0.8752 1.2683 34 1 3.3890 0.0669 -2.1438 35 1 4.3022 -0.5110 -0.7294 36 1 5.9496 -0.2311 -3.9910 37 1 5.5376 0.0551 -2.2807 38 1 7.4191 -1.3452 -1.5496 39 1 8.0247 -0.1100 -2.6796 40 1 7.8952 -1.7629 -4.5359 41 1 8.8347 -3.7886 -1.5576 42 1 10.4760 -3.1167 -1.4037 43 1 9.0616 -2.1078 -1.0175 44 1 9.8799 -3.1804 -5.0776 45 1 10.9538 -3.7432 -3.7746 46 1 9.3123 -4.4148 -3.9276 47 1 10.1988 -0.8199 -4.3200 48 1 9.8583 -0.3742 -2.6307 49 1 11.8707 -2.3560 -2.6404 50 1 15.7323 -0.0267 -2.4766 51 1 7.1026 -3.6842 -2.2999 52 1 7.4774 -4.1521 -3.9762 53 1 5.0056 -3.9117 -3.5454 54 1 5.6012 -2.8120 -4.8139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101570016.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:17 Heat of formation + Delta-G solvation = -37.080388 kcal Electronic energy + Delta-G solvation = -28349.920601 eV Core-core repulsion = 24707.177182 eV Total energy + Delta-G solvation = -3642.743420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.47123 -40.08852 -38.57807 -37.36410 -35.55861 -33.44286 -32.49593 -31.88764 -30.85676 -28.45640 -28.19274 -27.73586 -26.17914 -24.43923 -23.63466 -22.71247 -21.79071 -21.14724 -20.22084 -19.78934 -19.02772 -17.96643 -17.11223 -16.70990 -16.54605 -16.06893 -15.84444 -15.61128 -15.37212 -15.18180 -15.10430 -14.74900 -14.65841 -14.29284 -14.09235 -13.99280 -13.92780 -13.46101 -13.36576 -13.17906 -13.13525 -13.04704 -12.85863 -12.76262 -12.64575 -12.40201 -12.25321 -12.17942 -12.08862 -11.94009 -11.83496 -11.73748 -11.29101 -11.16273 -10.96110 -10.91787 -10.86623 -10.81227 -10.51617 -9.59844 -9.22732 -8.01576 -5.32398 1.35246 1.37966 1.45253 1.65426 2.04102 2.47697 2.85256 3.30087 3.51128 3.58195 3.71072 3.79390 3.81808 3.94786 3.98588 4.10180 4.15666 4.20715 4.29343 4.36082 4.40411 4.42677 4.47382 4.54704 4.58319 4.65407 4.74186 4.82261 4.83606 4.87548 4.92776 4.93830 4.95258 4.96275 4.97858 4.99374 5.05055 5.11942 5.16921 5.20579 5.21184 5.24123 5.32576 5.34752 5.41066 5.48252 5.52429 5.64596 5.68636 5.78803 6.23442 6.45496 7.10869 7.20467 7.89666 8.07336 9.20240 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.002440 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.096759 B =11471.599190 C =12030.608901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.141 4.141 3 H 0.119 0.881 4 C -0.180 4.180 5 C -0.151 4.151 6 H 0.091 0.909 7 C -0.104 4.104 8 C 0.511 3.489 9 O -0.589 6.589 10 N -0.609 5.609 11 C 0.108 3.892 12 C -0.135 4.135 13 C -0.063 4.063 14 C -0.060 4.060 15 C -0.138 4.138 16 C -0.140 4.140 17 C 0.163 3.837 18 N -0.755 5.755 19 C -0.226 4.226 20 H 0.058 0.942 21 C -0.066 4.066 22 N -0.984 5.984 23 Si 0.948 3.052 24 H -0.279 1.279 25 H -0.296 1.296 26 H -0.254 1.254 27 C -0.122 4.122 28 C 0.112 3.888 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.032 0.968 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.033 0.967 46 H 0.075 0.925 47 H 0.020 0.980 48 H 0.030 0.970 49 H 0.365 0.635 50 H 0.256 0.744 51 H 0.061 0.939 52 H 0.086 0.914 53 H 0.073 0.927 54 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.229 -3.222 2.024 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 H 0.137 0.863 4 C -0.217 4.217 5 C -0.169 4.169 6 H 0.110 0.890 7 C -0.143 4.143 8 C 0.302 3.698 9 O -0.469 6.469 10 N -0.342 5.342 11 C -0.014 4.014 12 C -0.173 4.173 13 C -0.082 4.082 14 C -0.060 4.060 15 C -0.195 4.195 16 C -0.197 4.197 17 C 0.037 3.963 18 N -0.402 5.402 19 C -0.357 4.357 20 H 0.076 0.924 21 C -0.257 4.257 22 N -0.635 5.635 23 Si 0.775 3.225 24 H -0.205 1.205 25 H -0.223 1.223 26 H -0.179 1.179 27 C -0.160 4.160 28 C -0.011 4.011 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.052 0.948 46 H 0.093 0.907 47 H 0.038 0.962 48 H 0.048 0.952 49 H 0.199 0.801 50 H 0.065 0.935 51 H 0.080 0.920 52 H 0.105 0.895 53 H 0.092 0.908 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -28.504 -3.548 1.977 28.792 hybrid contribution 1.244 -0.871 0.295 1.547 sum -27.260 -4.419 2.272 27.710 Atomic orbital electron populations 1.21396 0.92446 1.02237 1.02149 1.22531 0.95714 0.94615 1.03092 0.86300 1.23278 1.03102 1.01740 0.93608 1.22091 0.98137 1.02475 0.94220 0.89033 1.21288 0.96961 0.96116 0.99921 1.21136 0.79990 0.89910 0.78813 1.90648 1.56879 1.34037 1.65381 1.48266 1.22995 1.15003 1.47899 1.22051 0.90377 0.85270 1.03708 1.22171 0.95716 0.99456 0.99948 1.21005 0.91728 0.95444 1.00064 1.20657 0.94884 0.94675 0.95785 1.21895 1.00630 1.01334 0.95624 1.21880 1.00081 0.98463 0.99271 1.20923 0.82669 0.95763 0.96969 1.42816 1.05600 1.09698 1.82060 1.19064 0.88787 0.92141 1.35702 0.92412 1.25448 0.95972 1.01235 1.03067 1.69873 1.02034 1.34294 1.57344 0.85517 0.77844 0.80941 0.78158 1.20534 1.22308 1.17890 1.22002 0.93602 0.98042 1.02341 1.21603 0.94955 0.89044 0.95477 0.93043 0.90945 0.92090 0.89280 0.88128 0.86324 0.87115 0.89730 0.87513 0.91546 0.90187 0.90294 0.91314 0.94909 0.92379 0.92450 0.94755 0.90650 0.96180 0.95194 0.80099 0.93482 0.92004 0.89532 0.90814 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 10.19 71.98 0.73 -0.65 16 2 C -0.14 -1.72 6.13 -10.79 -0.07 -1.79 16 3 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 4 C -0.18 -2.61 9.82 30.60 0.30 -2.31 16 5 C -0.15 -2.44 5.14 -10.79 -0.06 -2.50 16 6 H 0.09 1.97 7.30 -2.39 -0.02 1.95 16 7 C -0.10 -1.42 4.33 29.85 0.13 -1.29 16 8 C 0.51 10.60 7.70 87.66 0.67 11.28 16 9 O -0.59 -17.20 14.97 -3.02 -0.05 -17.25 16 10 N -0.61 -10.68 2.97 -818.00 -2.43 -13.11 16 11 C 0.11 1.42 6.37 86.51 0.55 1.97 16 12 C -0.13 -2.36 4.67 30.82 0.14 -2.22 16 13 C -0.06 -1.23 1.51 -10.76 -0.02 -1.25 16 14 C -0.06 -1.56 0.33 -52.18 -0.02 -1.58 16 15 C -0.14 -3.67 7.59 71.98 0.55 -3.12 16 16 C -0.14 -3.62 7.95 71.98 0.57 -3.05 16 17 C 0.16 5.75 4.80 86.38 0.41 6.17 16 18 N -0.76 -34.49 4.81 -343.45 -1.65 -36.14 16 19 C -0.23 -12.77 10.47 84.03 0.88 -11.89 16 20 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 22 N -0.98 -63.18 13.97 21.65 0.30 -62.88 16 23 Si 0.95 45.74 27.74 68.60 1.90 47.64 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.25 -11.13 6.52 99.48 0.65 -10.48 16 27 C -0.12 -2.16 4.65 30.69 0.14 -2.02 16 28 C 0.11 2.02 6.43 86.37 0.56 2.57 16 29 H 0.05 0.61 7.90 -2.38 -0.02 0.59 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 1.34 8.05 -2.39 -0.02 1.32 16 33 H 0.10 1.29 8.03 -2.39 -0.02 1.27 16 34 H 0.12 1.09 7.93 -2.39 -0.02 1.07 16 35 H 0.11 1.19 7.44 -2.39 -0.02 1.17 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.11 0.94 5.93 -2.39 -0.01 0.92 16 38 H 0.07 1.25 6.51 -2.39 -0.02 1.24 16 39 H 0.08 1.53 6.36 -2.39 -0.02 1.52 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.55 6.46 -2.38 -0.02 1.53 16 42 H 0.03 1.03 6.86 -2.38 -0.02 1.01 16 43 H 0.06 1.51 6.46 -2.39 -0.02 1.49 16 44 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.03 1.05 6.86 -2.39 -0.02 1.03 16 46 H 0.07 1.56 6.40 -2.39 -0.02 1.55 16 47 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.03 1.07 6.40 -2.39 -0.02 1.05 16 49 H 0.36 16.15 3.22 -92.71 -0.30 15.85 16 50 H 0.26 15.72 8.31 -92.70 -0.77 14.94 16 51 H 0.06 1.22 6.51 -2.39 -0.02 1.20 16 52 H 0.09 1.40 6.36 -2.39 -0.02 1.39 16 53 H 0.07 1.60 7.00 -2.39 -0.02 1.58 16 54 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -72.78 398.24 4.55 -68.22 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.52 Total: 28.60 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 5.96 Total: -15.10 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -3.77 Total: -112.12 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.05 Total: -17.25 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.90 Total: 47.64 kcal Total: -72.78 4.55 -68.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101570016.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.144 kcal (2) G-P(sol) polarization free energy of solvation -72.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds