Wall clock time and date at job start Tue Mar 31 2020 15:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 115.56466 * 2 1 4 4 C 1.52998 * 117.49984 * 214.30961 * 2 1 3 5 5 C 1.52995 * 60.00064 * 252.51265 * 4 2 1 6 6 H 1.09000 * 117.49653 * 252.48301 * 5 4 2 7 7 C 1.53004 * 117.50015 * 107.49020 * 5 4 2 8 8 C 1.50700 * 109.47208 * 116.38881 * 7 5 4 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 5 10 10 N 1.34777 * 119.99675 * 180.27843 * 8 7 5 11 11 C 1.46921 * 120.63392 * 359.43977 * 10 8 7 12 12 C 1.53624 * 108.54016 * 126.36873 * 11 10 8 13 13 C 1.53041 * 109.23819 * 54.86424 * 12 11 10 14 14 C 1.53004 * 109.45947 * 178.48679 * 13 12 11 15 15 C 1.53006 * 109.46918 * 60.06332 * 14 13 12 16 16 C 1.52994 * 109.47349 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47122 * 300.06700 * 14 13 12 18 18 N 1.46505 * 109.47184 * 179.97438 * 17 14 13 19 19 C 1.36935 * 119.99847 * 179.97438 * 18 17 14 20 20 H 1.07998 * 120.00512 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99989 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99352 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00344 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47350 * 90.00106 * 23 21 19 25 25 H 1.48497 * 109.47249 * 210.00076 * 23 21 19 26 26 H 1.48502 * 109.47227 * 330.00381 * 23 21 19 27 27 C 1.53037 * 109.53606 * 298.50541 * 13 12 11 28 28 C 1.46924 * 120.62813 * 179.72946 * 10 8 7 29 29 H 1.09000 * 109.47611 * 274.31196 * 1 2 3 30 30 H 1.09008 * 109.47265 * 34.30793 * 1 2 3 31 31 H 1.08998 * 109.47553 * 154.31125 * 1 2 3 32 32 H 1.08996 * 117.50047 * 145.01772 * 4 2 1 33 33 H 1.09005 * 117.51429 * 359.97438 * 4 2 1 34 34 H 1.09009 * 109.46730 * 356.38787 * 7 5 4 35 35 H 1.08998 * 109.46846 * 236.39332 * 7 5 4 36 36 H 1.09000 * 109.59076 * 246.20663 * 11 10 8 37 37 H 1.09000 * 109.58577 * 6.63206 * 11 10 8 38 38 H 1.08990 * 109.63928 * 294.86618 * 12 11 10 39 39 H 1.09006 * 109.45894 * 174.74079 * 12 11 10 40 40 H 1.08995 * 109.46288 * 58.52798 * 13 12 11 41 41 H 1.09004 * 109.46946 * 60.00098 * 15 14 13 42 42 H 1.09003 * 109.46946 * 179.97438 * 15 14 13 43 43 H 1.08995 * 109.47017 * 300.00012 * 15 14 13 44 44 H 1.09004 * 109.47038 * 59.99751 * 16 14 13 45 45 H 1.09003 * 109.47519 * 180.02562 * 16 14 13 46 46 H 1.09004 * 109.47122 * 300.00274 * 16 14 13 47 47 H 1.08997 * 109.47349 * 299.99715 * 17 14 13 48 48 H 1.09005 * 109.47191 * 60.00086 * 17 14 13 49 49 H 0.96999 * 119.99791 * 359.97438 * 18 17 14 50 50 H 0.97009 * 119.99457 * 179.97438 * 22 21 19 51 51 H 1.09008 * 109.50055 * 301.41274 * 27 13 12 52 52 H 1.08995 * 109.52388 * 181.33998 * 27 13 12 53 53 H 1.09006 * 109.58932 * 353.36359 * 28 10 8 54 54 H 1.08998 * 109.59450 * 113.65039 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 3.1716 -0.8756 1.2683 7 6 1.3587 -2.1562 1.4715 8 6 2.2299 -3.0967 2.2636 9 8 3.4342 -2.9534 2.2628 10 7 1.6711 -4.1007 2.9680 11 6 0.2134 -4.2837 2.9832 12 6 -0.1018 -5.7295 2.5705 13 6 0.6616 -6.6922 3.4830 14 6 0.3220 -8.1342 3.1006 15 6 0.7249 -8.3845 1.6459 16 6 1.0845 -9.0969 4.0130 17 6 -1.1824 -8.3632 3.2597 18 7 -1.5077 -9.7438 2.8930 19 6 -2.8033 -10.1823 2.9579 20 1 -3.5854 -9.5103 3.2790 21 6 -3.1117 -11.4903 2.6100 22 7 -2.1585 -12.3091 2.2182 23 14 -4.8791 -12.0883 2.6978 24 1 -5.5489 -11.8465 1.3947 25 1 -4.8954 -13.5420 3.0004 26 1 -5.5983 -11.3517 3.7681 27 6 2.1664 -6.4634 3.3237 28 6 2.5077 -5.0293 3.7403 29 1 -0.3634 0.0773 1.0247 30 1 -0.3634 0.8489 -0.5793 31 1 -0.3634 -0.9261 -0.4455 32 1 3.1714 -0.8752 -1.2683 33 1 1.6114 -1.8589 -1.2680 34 1 0.7947 -2.7214 0.7294 35 1 0.6673 -1.6482 2.1437 36 1 -0.1680 -4.0958 3.9869 37 1 -0.2490 -3.5921 2.2790 38 1 0.2026 -5.8899 1.5363 39 1 -1.1726 -5.9093 2.6666 40 1 0.3750 -6.5145 4.5194 41 1 1.7967 -8.2213 1.5325 42 1 0.4833 -9.4120 1.3736 43 1 0.1821 -7.6987 0.9955 44 1 0.7982 -8.9188 5.0496 45 1 0.8429 -10.1243 3.7403 46 1 2.1562 -8.9336 3.8990 47 1 -1.4694 -8.1849 4.2960 48 1 -1.7251 -7.6774 2.6092 49 1 -0.8053 -10.3473 2.6043 50 1 -2.3739 -13.2232 1.9754 51 1 2.4496 -6.6170 2.2823 52 1 2.7105 -7.1652 3.9557 53 1 3.5597 -4.8300 3.5357 54 1 2.3115 -4.8993 4.8046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101570017.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:21 Heat of formation + Delta-G solvation = -39.207094 kcal Electronic energy + Delta-G solvation = -28460.804402 eV Core-core repulsion = 24817.968762 eV Total energy + Delta-G solvation = -3642.835641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.46973 -40.06836 -38.63112 -37.28817 -35.48817 -33.22244 -32.29038 -31.67677 -30.37637 -28.93262 -28.16160 -27.48351 -26.24586 -24.68003 -23.70377 -22.75654 -22.02519 -20.69426 -19.74218 -19.46403 -18.98731 -18.10262 -17.18131 -16.63538 -16.57157 -16.09409 -16.02753 -15.45388 -15.24414 -15.19192 -14.88341 -14.74877 -14.61634 -14.18566 -14.14266 -14.05043 -13.74792 -13.42264 -13.24512 -13.07745 -13.05020 -12.87633 -12.80051 -12.73039 -12.61989 -12.42506 -12.25326 -12.11324 -12.05517 -11.90847 -11.85925 -11.71792 -11.23616 -11.11993 -10.92500 -10.85311 -10.80123 -10.77984 -10.56307 -9.59106 -8.91076 -7.91625 -5.18155 1.47925 1.49308 1.57633 1.65605 2.04947 2.58480 2.86354 3.42060 3.53923 3.70513 3.73294 3.80476 3.84293 3.96556 4.04930 4.14467 4.21521 4.30458 4.31741 4.40234 4.41794 4.45458 4.47492 4.56237 4.61832 4.66753 4.73137 4.84051 4.86615 4.89520 4.94588 4.95292 4.98503 5.01269 5.01776 5.03535 5.06242 5.14016 5.18335 5.25579 5.25742 5.28158 5.33837 5.36570 5.44884 5.48942 5.51855 5.59046 5.68298 5.71203 6.31576 6.46308 7.20862 7.37922 8.18338 8.39982 9.32298 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.002526 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.079533 B =11081.075229 C =12042.000505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.141 4.141 3 H 0.107 0.893 4 C -0.182 4.182 5 C -0.151 4.151 6 H 0.092 0.908 7 C -0.101 4.101 8 C 0.511 3.489 9 O -0.589 6.589 10 N -0.609 5.609 11 C 0.108 3.892 12 C -0.133 4.133 13 C -0.063 4.063 14 C -0.055 4.055 15 C -0.131 4.131 16 C -0.134 4.134 17 C 0.161 3.839 18 N -0.742 5.742 19 C -0.238 4.238 20 H 0.075 0.925 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.971 3.029 24 H -0.288 1.288 25 H -0.298 1.298 26 H -0.269 1.269 27 C -0.123 4.123 28 C 0.113 3.887 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.028 0.972 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.030 0.970 46 H 0.070 0.930 47 H 0.014 0.986 48 H 0.026 0.974 49 H 0.375 0.625 50 H 0.249 0.751 51 H 0.059 0.941 52 H 0.084 0.916 53 H 0.073 0.927 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.963 24.990 -0.324 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 H 0.125 0.875 4 C -0.219 4.219 5 C -0.170 4.170 6 H 0.110 0.890 7 C -0.140 4.140 8 C 0.301 3.699 9 O -0.470 6.470 10 N -0.342 5.342 11 C -0.013 4.013 12 C -0.171 4.171 13 C -0.082 4.082 14 C -0.056 4.056 15 C -0.188 4.188 16 C -0.191 4.191 17 C 0.035 3.965 18 N -0.385 5.385 19 C -0.370 4.370 20 H 0.093 0.907 21 C -0.271 4.271 22 N -0.623 5.623 23 Si 0.800 3.200 24 H -0.215 1.215 25 H -0.225 1.225 26 H -0.194 1.194 27 C -0.161 4.161 28 C -0.010 4.010 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.137 0.863 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.032 0.968 48 H 0.044 0.956 49 H 0.208 0.792 50 H 0.058 0.942 51 H 0.078 0.922 52 H 0.102 0.898 53 H 0.092 0.908 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.393 25.089 -0.270 26.157 hybrid contribution -0.443 -1.357 -0.181 1.439 sum 6.951 23.732 -0.451 24.733 Atomic orbital electron populations 1.21412 0.91501 1.02644 1.02638 1.22498 0.96325 0.94080 1.03008 0.87507 1.23241 1.02781 1.02242 0.93612 1.22064 1.00817 0.99875 0.94233 0.88992 1.21238 0.97606 0.95338 0.99806 1.21167 0.88565 0.81412 0.78776 1.90649 1.17210 1.73855 1.65267 1.48265 1.08460 1.29166 1.48264 1.22062 0.78386 0.97151 1.03747 1.22156 1.01142 0.94036 0.99808 1.21003 0.94920 0.92247 1.00011 1.20594 0.94041 0.95501 0.95427 1.21809 1.00770 1.00448 0.95768 1.21808 1.00012 0.98301 0.99012 1.20915 0.93775 0.85469 0.96353 1.42665 1.05932 1.09528 1.80381 1.19648 0.86907 0.94968 1.35480 0.90730 1.25525 1.01237 0.97016 1.03318 1.69825 1.32834 1.05961 1.53665 0.85174 0.80205 0.76823 0.77790 1.21532 1.22503 1.19412 1.21989 0.96109 0.95783 1.02169 1.21583 0.95511 0.88313 0.95591 0.91230 0.91439 0.92055 0.89214 0.88239 0.87286 0.86315 0.89565 0.87445 0.91787 0.90034 0.90343 0.91838 0.95250 0.92642 0.92823 0.95128 0.91135 0.96789 0.95605 0.79190 0.94216 0.92227 0.89798 0.90831 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 9.19 71.98 0.66 -0.48 16 2 C -0.14 -1.78 6.41 -10.80 -0.07 -1.85 16 3 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.18 -2.75 9.82 30.59 0.30 -2.45 16 5 C -0.15 -2.54 5.42 -10.79 -0.06 -2.60 16 6 H 0.09 2.01 7.30 -2.39 -0.02 1.99 16 7 C -0.10 -1.45 3.41 29.85 0.10 -1.35 16 8 C 0.51 11.04 7.70 87.66 0.67 11.72 16 9 O -0.59 -17.75 14.98 -3.04 -0.05 -17.80 16 10 N -0.61 -11.31 2.97 -818.07 -2.43 -13.74 16 11 C 0.11 1.50 6.37 86.51 0.55 2.05 16 12 C -0.13 -2.51 4.67 30.82 0.14 -2.36 16 13 C -0.06 -1.35 1.51 -10.77 -0.02 -1.37 16 14 C -0.06 -1.62 0.33 -52.18 -0.02 -1.64 16 15 C -0.13 -4.03 7.59 71.98 0.55 -3.48 16 16 C -0.13 -4.08 7.95 71.98 0.57 -3.51 16 17 C 0.16 6.06 4.80 86.38 0.41 6.47 16 18 N -0.74 -36.88 5.01 -343.44 -1.72 -38.60 16 19 C -0.24 -13.15 9.99 84.03 0.84 -12.31 16 20 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 21 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 22 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16 23 Si 0.97 46.07 29.55 68.60 2.03 48.09 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 25 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 C -0.12 -2.45 4.65 30.67 0.14 -2.31 16 28 C 0.11 2.19 6.43 86.36 0.56 2.75 16 29 H 0.07 0.53 7.83 -2.39 -0.02 0.51 16 30 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.06 0.54 7.90 -2.39 -0.02 0.52 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 1.38 7.94 -2.38 -0.02 1.36 16 34 H 0.11 1.28 7.43 -2.38 -0.02 1.26 16 35 H 0.12 1.16 7.56 -2.39 -0.02 1.14 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.11 0.99 5.93 -2.39 -0.01 0.97 16 38 H 0.06 1.32 6.51 -2.39 -0.02 1.31 16 39 H 0.08 1.61 6.36 -2.38 -0.02 1.60 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.06 1.70 6.46 -2.38 -0.02 1.69 16 42 H 0.03 1.10 6.86 -2.39 -0.02 1.09 16 43 H 0.05 1.64 6.46 -2.39 -0.02 1.62 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.03 1.14 6.87 -2.39 -0.02 1.12 16 46 H 0.07 1.78 6.40 -2.38 -0.02 1.76 16 47 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.03 0.96 6.40 -2.38 -0.02 0.94 16 49 H 0.37 20.02 5.36 -92.71 -0.50 19.52 16 50 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 51 H 0.06 1.34 6.51 -2.38 -0.02 1.32 16 52 H 0.08 1.59 6.36 -2.39 -0.02 1.58 16 53 H 0.07 1.70 7.01 -2.38 -0.02 1.68 16 54 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -70.15 399.32 4.31 -65.84 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.38 Total: 32.41 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 5.81 Total: -16.79 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -3.86 Total: -111.76 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.05 Total: -17.80 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -70.15 4.31 -65.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101570017.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.630 kcal (2) G-P(sol) polarization free energy of solvation -70.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds