Wall clock time and date at job start Tue Mar 31 2020 15:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.64439 * 2 1 4 4 C 1.54318 * 110.87390 * 236.74583 * 2 1 3 5 5 N 1.47023 * 107.27367 * 219.37634 * 4 2 1 6 6 C 1.36938 * 125.64552 * 178.99127 * 5 4 2 7 7 H 1.08001 * 119.99488 * 174.78476 * 6 5 4 8 8 C 1.38811 * 120.00511 * 354.78152 * 6 5 4 9 9 N 1.31622 * 119.99327 * 7.05547 * 8 6 5 10 10 Si 1.86794 * 120.00218 * 187.05722 * 8 6 5 11 11 H 1.48498 * 109.47009 * 94.98589 * 10 8 6 12 12 H 1.48499 * 109.47215 * 214.98660 * 10 8 6 13 13 H 1.48503 * 109.47315 * 334.98674 * 10 8 6 14 14 C 1.47422 * 108.70067 * 358.94122 * 5 4 2 15 15 C 1.54905 * 104.83420 * 24.13047 * 14 5 4 16 16 H 1.08999 * 111.03945 * 81.07524 * 15 14 5 17 17 C 1.52999 * 111.00368 * 204.91522 * 15 14 5 18 18 C 1.53003 * 109.47195 * 287.19594 * 17 15 14 19 19 N 1.46498 * 109.46900 * 180.02562 * 18 17 15 20 20 C 1.34778 * 119.99630 * 180.02562 * 19 18 17 21 21 O 1.21283 * 120.00053 * 359.97438 * 20 19 18 22 22 C 1.50699 * 119.99813 * 179.97438 * 20 19 18 23 23 H 1.08998 * 109.47685 * 59.99467 * 22 20 19 24 24 C 1.53003 * 109.47082 * 179.97438 * 22 20 19 25 25 C 1.52999 * 109.47195 * 179.97438 * 24 22 20 26 26 C 1.52998 * 109.47177 * 299.99935 * 25 24 22 27 27 H 1.08999 * 109.47555 * 299.99728 * 26 25 24 28 28 C 1.52999 * 109.47177 * 180.02562 * 26 25 24 29 29 C 1.53003 * 109.47004 * 59.99949 * 26 25 24 30 30 C 1.52998 * 109.46977 * 299.99333 * 22 20 19 31 31 H 1.08998 * 109.47188 * 296.86009 * 1 2 3 32 32 H 1.09002 * 109.46798 * 56.85754 * 1 2 3 33 33 H 1.08998 * 109.47332 * 176.86084 * 1 2 3 34 34 H 1.08999 * 109.88310 * 338.79581 * 4 2 1 35 35 H 1.09008 * 109.87986 * 99.80046 * 4 2 1 36 36 H 0.97001 * 119.99501 * 180.02562 * 9 8 6 37 37 H 1.09003 * 110.36311 * 265.28790 * 14 5 4 38 38 H 1.09000 * 110.36176 * 142.96959 * 14 5 4 39 39 H 1.08998 * 109.46914 * 167.19322 * 17 15 14 40 40 H 1.09007 * 109.47211 * 47.19689 * 17 15 14 41 41 H 1.08997 * 109.47031 * 300.00003 * 18 17 15 42 42 H 1.08999 * 109.46692 * 60.00228 * 18 17 15 43 43 H 0.97000 * 120.00196 * 359.97438 * 19 18 17 44 44 H 1.08997 * 109.47031 * 299.99689 * 24 22 20 45 45 H 1.08998 * 109.47412 * 59.99718 * 24 22 20 46 46 H 1.08998 * 109.47372 * 60.00000 * 25 24 22 47 47 H 1.08998 * 109.47288 * 180.02562 * 25 24 22 48 48 H 1.08995 * 109.47540 * 59.99903 * 28 26 25 49 49 H 1.09007 * 109.47211 * 180.02562 * 28 26 25 50 50 H 1.08998 * 109.47372 * 300.00066 * 28 26 25 51 51 H 1.08998 * 109.46960 * 60.00292 * 29 26 25 52 52 H 1.09007 * 109.47118 * 179.97438 * 29 26 25 53 53 H 1.08999 * 109.47555 * 299.99989 * 30 22 20 54 54 H 1.09003 * 109.47165 * 60.00415 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7907 -1.2058 5 7 3.2494 -1.5471 -0.7351 6 6 4.0126 -2.3918 -1.4963 7 1 4.9036 -2.8376 -1.0795 8 6 3.6410 -2.6751 -2.8034 9 7 2.6375 -2.0279 -3.3571 10 14 4.5650 -3.9746 -3.7763 11 1 3.8536 -5.2735 -3.6673 12 1 4.6364 -3.5675 -5.2026 13 1 5.9396 -4.1160 -3.2325 14 6 3.4651 -1.2447 0.6915 15 6 2.0789 -0.7934 1.2152 16 1 1.4464 -1.6525 1.4389 17 6 2.2236 0.1112 2.4407 18 6 2.6467 -0.7287 3.6475 19 7 2.7846 0.1374 4.8210 20 6 3.1521 -0.3878 6.0066 21 8 3.3681 -1.5774 6.1021 22 6 3.2945 0.5032 7.2136 23 1 2.3400 0.9858 7.4238 24 6 3.7175 -0.3367 8.4205 25 6 3.8628 0.5679 9.6458 26 6 4.9244 1.6344 9.3694 27 1 5.8787 1.1513 9.1593 28 6 5.0701 2.5387 10.5949 29 6 4.5014 2.4743 8.1625 30 6 4.3555 1.5704 6.9374 31 1 -0.3633 0.4643 0.9168 32 1 -0.3633 0.5619 -0.8605 33 1 -0.3634 -1.0261 -0.0563 34 1 1.3191 -1.4774 -1.5769 35 1 2.3750 -0.1018 -1.9973 36 1 2.3776 -2.2261 -4.2704 37 1 4.1929 -0.4409 0.8030 38 1 3.7991 -2.1364 1.2220 39 1 1.2691 0.5939 2.6506 40 1 2.9797 0.8713 2.2440 41 1 1.8906 -1.4888 3.8442 42 1 3.6012 -1.2114 3.4375 43 1 2.6122 1.0888 4.7445 44 1 2.9614 -1.0967 8.6172 45 1 4.6719 -0.8196 8.2106 46 1 2.9086 1.0511 9.8559 47 1 4.1645 -0.0304 10.5055 48 1 5.3716 1.9401 11.4544 49 1 5.8262 3.2988 10.3978 50 1 4.1160 3.0218 10.8055 51 1 3.5472 2.9575 8.3726 52 1 5.2576 3.2344 7.9658 53 1 5.3101 1.0879 6.7272 54 1 4.0538 2.1687 6.0777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103660206.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:33 Heat of formation + Delta-G solvation = -80.297745 kcal Electronic energy + Delta-G solvation = -27619.567507 eV Core-core repulsion = 23974.950042 eV Total energy + Delta-G solvation = -3644.617465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.23158 -39.81153 -38.89018 -36.45764 -35.01426 -33.78436 -32.53914 -32.32112 -31.57987 -28.75852 -27.78665 -27.14779 -25.55832 -23.70667 -23.51473 -22.88077 -21.54495 -21.14822 -20.68920 -20.49851 -18.85764 -18.09199 -17.04957 -16.97320 -16.57164 -16.13004 -15.79172 -15.55551 -15.19629 -15.16248 -15.06722 -14.79766 -14.45392 -14.21686 -14.08035 -13.78403 -13.46124 -13.39966 -13.33050 -13.09628 -13.05519 -12.93654 -12.79788 -12.70413 -12.39432 -12.33192 -12.20764 -11.98429 -11.91511 -11.87244 -11.83010 -11.57204 -11.41250 -11.27347 -11.21131 -11.12682 -10.89410 -10.69785 -10.59997 -10.05616 -8.88729 -7.87413 -5.21272 1.42523 1.44902 1.53627 1.66561 2.23494 2.47739 3.29888 3.62032 3.67095 3.72735 3.77586 3.79255 3.95842 4.03989 4.15610 4.18472 4.23675 4.33914 4.37352 4.46760 4.52486 4.53840 4.60564 4.62207 4.66403 4.74587 4.76411 4.83771 4.86525 4.96585 5.00987 5.01865 5.04524 5.08105 5.13151 5.16507 5.19105 5.23018 5.28542 5.29373 5.35009 5.40787 5.44813 5.46129 5.47604 5.50246 5.55245 5.63913 5.74482 5.83930 6.20445 6.61134 7.10215 7.31064 7.78314 8.43158 9.23086 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021950 B = 0.002084 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.308095 B =13431.426422 C =14008.591626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.081 0.919 4 C 0.189 3.811 5 N -0.632 5.632 6 C -0.244 4.244 7 H 0.077 0.923 8 C -0.067 4.067 9 N -0.948 5.948 10 Si 0.977 3.023 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.269 1.269 14 C 0.133 3.867 15 C -0.080 4.080 16 H 0.069 0.931 17 C -0.098 4.098 18 C 0.123 3.877 19 N -0.714 5.714 20 C 0.507 3.493 21 O -0.592 6.592 22 C -0.096 4.096 23 H 0.122 0.878 24 C -0.100 4.100 25 C -0.107 4.107 26 C -0.097 4.097 27 H 0.058 0.942 28 C -0.145 4.145 29 C -0.108 4.108 30 C -0.108 4.108 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.011 0.989 35 H -0.003 1.003 36 H 0.247 0.753 37 H 0.024 0.976 38 H 0.030 0.970 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.417 0.583 44 H 0.054 0.946 45 H 0.046 0.954 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.053 0.947 49 H 0.057 0.943 50 H 0.061 0.939 51 H 0.079 0.921 52 H 0.073 0.927 53 H 0.051 0.949 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.755 14.624 27.292 31.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.100 0.900 4 C 0.064 3.936 5 N -0.358 5.358 6 C -0.374 4.374 7 H 0.095 0.905 8 C -0.260 4.260 9 N -0.597 5.597 10 Si 0.805 3.195 11 H -0.215 1.215 12 H -0.219 1.219 13 H -0.194 1.194 14 C 0.008 3.992 15 C -0.100 4.100 16 H 0.087 0.913 17 C -0.136 4.136 18 C -0.001 4.001 19 N -0.366 5.366 20 C 0.295 3.705 21 O -0.473 6.473 22 C -0.117 4.117 23 H 0.140 0.860 24 C -0.138 4.138 25 C -0.145 4.145 26 C -0.116 4.116 27 H 0.076 0.924 28 C -0.202 4.202 29 C -0.145 4.145 30 C -0.146 4.146 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.030 0.970 35 H 0.016 0.984 36 H 0.056 0.944 37 H 0.042 0.958 38 H 0.048 0.952 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.254 0.746 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.080 0.920 51 H 0.097 0.903 52 H 0.091 0.909 53 H 0.069 0.931 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.583 13.708 27.143 30.449 hybrid contribution 0.602 -0.968 -1.388 1.796 sum -0.981 12.740 25.755 28.750 Atomic orbital electron populations 1.21633 0.93177 1.01202 1.02405 1.22361 0.96780 0.98664 0.94222 0.90035 1.21016 0.87963 0.91905 0.92750 1.44837 1.32642 1.51565 1.06727 1.19442 1.04690 1.18788 0.94445 0.90494 1.25670 0.99903 1.02129 0.98300 1.70209 1.31712 1.44099 1.13666 0.85086 0.78191 0.78724 0.77529 1.21451 1.21855 1.19379 1.21835 0.96144 0.97044 0.84170 1.22198 0.95664 0.98042 0.94062 0.91260 1.21588 1.03573 0.97418 0.91019 1.21241 1.00553 0.93479 0.84830 1.45941 1.69418 1.12755 1.08535 1.21395 0.75063 0.88576 0.85436 1.90696 1.51965 1.18746 1.85873 1.21372 1.02810 0.96041 0.91477 0.86047 1.21315 1.01041 0.97403 0.94024 1.21579 0.99852 0.96634 0.96408 1.21187 0.98439 0.96105 0.95845 0.92372 1.21800 1.02179 0.99289 0.96932 1.21565 1.02742 0.97209 0.92982 1.21538 0.97375 0.95939 0.99775 0.89794 0.92884 0.94226 0.97050 0.98427 0.94406 0.95802 0.95184 0.88360 0.90104 0.92654 0.93617 0.74563 0.92673 0.93496 0.90581 0.91699 0.92837 0.92407 0.91972 0.90250 0.90882 0.93054 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.17 71.98 0.66 -2.98 16 2 C -0.10 -3.52 3.01 -9.60 -0.03 -3.55 16 3 H 0.08 2.58 8.04 -2.39 -0.02 2.56 16 4 C 0.19 9.49 4.98 86.73 0.43 9.92 16 5 N -0.63 -33.78 3.39 -692.00 -2.35 -36.13 16 6 C -0.24 -14.36 10.27 84.03 0.86 -13.50 16 7 H 0.08 4.37 7.84 -2.91 -0.02 4.35 16 8 C -0.07 -3.96 5.48 84.86 0.46 -3.50 16 9 N -0.95 -58.70 10.36 21.65 0.22 -58.48 16 10 Si 0.98 47.43 29.56 68.60 2.03 49.46 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 14 C 0.13 5.55 6.18 86.85 0.54 6.09 16 15 C -0.08 -2.56 2.45 -9.40 -0.02 -2.58 16 16 H 0.07 2.35 8.05 -2.39 -0.02 2.33 16 17 C -0.10 -2.11 4.84 30.59 0.15 -1.96 16 18 C 0.12 2.95 5.58 86.38 0.48 3.43 16 19 N -0.71 -13.23 5.45 -463.06 -2.52 -15.75 16 20 C 0.51 11.53 7.15 87.66 0.63 12.16 16 21 O -0.59 -19.79 15.98 -3.04 -0.05 -19.84 16 22 C -0.10 -1.40 2.53 -11.54 -0.03 -1.42 16 23 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 24 C -0.10 -1.69 4.49 30.59 0.14 -1.55 16 25 C -0.11 -1.23 5.20 30.59 0.16 -1.07 16 26 C -0.10 -1.00 2.72 -10.79 -0.03 -1.03 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 28 C -0.14 -1.17 9.19 71.98 0.66 -0.51 16 29 C -0.11 -0.91 5.20 30.58 0.16 -0.75 16 30 C -0.11 -1.23 5.10 30.58 0.16 -1.07 16 31 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.04 1.25 8.07 -2.39 -0.02 1.23 16 34 H 0.01 0.64 6.93 -2.39 -0.02 0.63 16 35 H 0.00 -0.14 7.61 -2.38 -0.02 -0.16 16 36 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 37 H 0.02 0.97 7.91 -2.39 -0.02 0.95 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.10 1.58 8.09 -2.39 -0.02 1.57 16 40 H 0.08 1.62 7.96 -2.38 -0.02 1.60 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.34 7.75 -2.39 -0.02 1.32 16 43 H 0.42 4.59 7.89 -92.71 -0.73 3.85 16 44 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 45 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 46 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 50 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 51 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 52 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 53 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 54 H 0.09 0.69 7.56 -2.39 -0.02 0.67 16 Total: -1.00 -76.41 411.75 2.81 -73.61 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.10 Total: 11.00 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 5.38 Total: -3.87 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -4.65 Total: -110.36 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.05 Total: -19.84 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -76.41 2.81 -73.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103660206.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.692 kcal (2) G-P(sol) polarization free energy of solvation -76.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds