Wall clock time and date at job start Tue Mar 31 2020 15:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 110.79413 * 2 1 4 4 C 1.54595 * 110.83731 * 236.85283 * 2 1 3 5 5 N 1.48113 * 103.42257 * 204.44476 * 4 2 1 6 6 C 1.34777 * 127.03063 * 219.27993 * 5 4 2 7 7 O 1.21277 * 119.99927 * 179.68304 * 6 5 4 8 8 C 1.50697 * 120.00075 * 359.69121 * 6 5 4 9 9 H 1.09000 * 109.47374 * 59.99607 * 8 6 5 10 10 C 1.53006 * 109.47239 * 179.97438 * 8 6 5 11 11 C 1.52997 * 109.47164 * 179.97438 * 10 8 6 12 12 C 1.53002 * 109.47415 * 300.00027 * 11 10 8 13 13 H 1.08996 * 109.46550 * 300.00288 * 12 11 10 14 14 C 1.52995 * 109.46925 * 180.02562 * 12 11 10 15 15 C 1.52996 * 109.46972 * 59.99860 * 12 11 10 16 16 C 1.52997 * 109.47165 * 300.00293 * 15 12 11 17 17 C 1.47478 * 105.93150 * 39.02261 * 5 4 2 18 18 C 1.53995 * 107.08836 * 334.77534 * 17 5 4 19 19 H 1.09004 * 110.32966 * 120.30034 * 18 17 5 20 20 C 1.52996 * 110.33080 * 242.41487 * 18 17 5 21 21 C 1.52994 * 109.47502 * 293.54607 * 20 18 17 22 22 N 1.46498 * 109.47563 * 179.97438 * 21 20 18 23 23 C 1.36935 * 120.00324 * 179.97438 * 22 21 20 24 24 H 1.08006 * 119.99883 * 0.02562 * 23 22 21 25 25 C 1.38806 * 120.00245 * 179.97438 * 23 22 21 26 26 N 1.31621 * 120.00293 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00160 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46916 * 60.00773 * 27 25 23 29 29 H 1.48502 * 109.47110 * 180.02562 * 27 25 23 30 30 H 1.48490 * 109.47273 * 300.00471 * 27 25 23 31 31 H 1.08995 * 109.46962 * 296.71041 * 1 2 3 32 32 H 1.08996 * 109.46959 * 56.71214 * 1 2 3 33 33 H 1.09002 * 109.46756 * 176.71393 * 1 2 3 34 34 H 1.09003 * 110.61698 * 85.92461 * 4 2 1 35 35 H 1.08999 * 110.54093 * 322.92807 * 4 2 1 36 36 H 1.09001 * 109.46998 * 299.99373 * 10 8 6 37 37 H 1.09000 * 109.47050 * 59.99664 * 10 8 6 38 38 H 1.09000 * 109.47140 * 60.00051 * 11 10 8 39 39 H 1.09001 * 109.47230 * 179.97438 * 11 10 8 40 40 H 1.08992 * 109.47458 * 59.99987 * 14 12 11 41 41 H 1.09001 * 109.46885 * 180.02562 * 14 12 11 42 42 H 1.08999 * 109.47330 * 299.98997 * 14 12 11 43 43 H 1.09000 * 109.47054 * 60.00300 * 15 12 11 44 44 H 1.09001 * 109.46997 * 180.02562 * 15 12 11 45 45 H 1.09000 * 109.47140 * 299.99954 * 16 15 12 46 46 H 1.09002 * 109.47045 * 180.02562 * 16 15 12 47 47 H 1.08998 * 109.91364 * 94.14408 * 17 5 4 48 48 H 1.09006 * 109.91206 * 215.41239 * 17 5 4 49 49 H 1.09000 * 109.46952 * 53.55052 * 20 18 17 50 50 H 1.09005 * 109.47018 * 173.54509 * 20 18 17 51 51 H 1.09007 * 109.47223 * 299.99869 * 21 20 18 52 52 H 1.08996 * 109.47209 * 59.99689 * 21 20 18 53 53 H 0.96999 * 119.99603 * 359.97438 * 22 21 20 54 54 H 0.96993 * 120.00456 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0191 0.0000 4 6 2.0800 -0.7900 -1.2097 5 7 3.4280 -1.2098 -0.7622 6 6 4.5539 -1.2470 -1.5021 7 8 5.5972 -1.6093 -1.0009 8 6 4.5164 -0.8383 -2.9521 9 1 4.1847 0.1971 -3.0294 10 6 5.9161 -0.9713 -3.5558 11 6 5.8779 -0.5570 -5.0281 12 6 4.9067 -1.4628 -5.7879 13 1 5.2391 -2.4979 -5.7101 14 6 4.8691 -1.0488 -7.2603 15 6 3.5072 -1.3298 -5.1842 16 6 3.5453 -1.7441 -3.7119 17 6 3.2875 -1.5726 0.6604 18 6 2.0776 -0.7935 1.2087 19 1 1.3218 -1.4832 1.5846 20 6 2.5200 0.1640 2.3169 21 6 3.0095 -0.6417 3.5219 22 7 3.4336 0.2753 4.5829 23 6 3.9124 -0.2210 5.7659 24 1 3.9777 -1.2885 5.9167 25 6 4.3147 0.6477 6.7709 26 7 4.2356 1.9486 6.5870 27 14 4.9672 -0.0293 8.3850 28 1 6.1717 -0.8576 8.1235 29 1 5.3258 1.0962 9.2850 30 1 3.9225 -0.8646 9.0298 31 1 -0.3633 0.4619 0.9180 32 1 -0.3633 0.5640 -0.8590 33 1 -0.3633 -1.0260 -0.0589 34 1 2.1487 -0.1482 -2.0881 35 1 1.4549 -1.6590 -1.4151 36 1 6.6081 -0.3262 -3.0143 37 1 6.2483 -2.0066 -3.4785 38 1 5.5456 0.4782 -5.1058 39 1 6.8751 -0.6513 -5.4581 40 1 5.8662 -1.1438 -7.6900 41 1 4.1769 -1.6938 -7.8014 42 1 4.5369 -0.0136 -7.3383 43 1 3.1748 -0.2946 -5.2619 44 1 2.8153 -1.9755 -5.7252 45 1 3.8777 -2.7793 -3.6342 46 1 2.5481 -1.6498 -3.2820 47 1 3.1127 -2.6444 0.7546 48 1 4.1884 -1.2915 1.2059 49 1 3.3285 0.7960 1.9497 50 1 1.6777 0.7884 2.6152 51 1 2.2008 -1.2736 3.8892 52 1 3.8517 -1.2660 3.2237 53 1 3.3753 1.2339 4.4473 54 1 4.5164 2.5557 7.2894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104931599.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:21 Heat of formation + Delta-G solvation = -83.384676 kcal Electronic energy + Delta-G solvation = -28127.417981 eV Core-core repulsion = 24482.666657 eV Total energy + Delta-G solvation = -3644.751324 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.60485 -39.78518 -38.59422 -36.89740 -34.74019 -33.69437 -33.36483 -31.88928 -31.57233 -28.94789 -27.62504 -27.12140 -25.89645 -24.24560 -23.57797 -22.88823 -21.83471 -20.94581 -20.73774 -20.18024 -19.18285 -18.01274 -17.37090 -16.70274 -16.64423 -16.25501 -15.63410 -15.50025 -15.22115 -15.19146 -15.11501 -15.01970 -14.60532 -14.27620 -14.09513 -13.80979 -13.59441 -13.45025 -13.23269 -13.15036 -13.07873 -12.94225 -12.85384 -12.72774 -12.46456 -12.35025 -12.30663 -12.16809 -12.00869 -11.92269 -11.90427 -11.61489 -11.58333 -11.48871 -11.27842 -11.20528 -10.95065 -10.89425 -10.67380 -9.73003 -9.04601 -7.99057 -5.28730 1.43449 1.47668 1.53708 1.58314 1.94966 2.52802 3.33472 3.35686 3.55769 3.61861 3.66108 3.73833 3.75941 4.11494 4.11965 4.15873 4.21780 4.27446 4.30004 4.39380 4.43155 4.47185 4.49654 4.56570 4.60025 4.63797 4.67044 4.74435 4.75821 4.84791 4.87467 4.93326 4.96113 4.98859 5.02179 5.06159 5.11830 5.18284 5.20017 5.23828 5.25962 5.28799 5.32694 5.34781 5.41517 5.44797 5.45006 5.46548 5.58669 5.62255 6.23433 6.54956 7.12274 7.28828 8.04859 8.28244 9.24415 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019601 B = 0.002351 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.148372 B =11909.105487 C =12824.381715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 H 0.075 0.925 4 C 0.103 3.897 5 N -0.619 5.619 6 C 0.522 3.478 7 O -0.597 6.597 8 C -0.091 4.091 9 H 0.114 0.886 10 C -0.099 4.099 11 C -0.107 4.107 12 C -0.096 4.096 13 H 0.061 0.939 14 C -0.144 4.144 15 C -0.106 4.106 16 C -0.110 4.110 17 C 0.104 3.896 18 C -0.081 4.081 19 H 0.103 0.897 20 C -0.101 4.101 21 C 0.149 3.851 22 N -0.749 5.749 23 C -0.251 4.251 24 H 0.073 0.927 25 C -0.078 4.078 26 N -0.970 5.970 27 Si 0.977 3.023 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.274 1.274 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.053 0.947 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.042 0.958 49 H 0.043 0.957 50 H 0.071 0.929 51 H 0.026 0.974 52 H 0.009 0.991 53 H 0.373 0.627 54 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.147 -5.913 -31.614 33.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.018 4.018 5 N -0.352 5.352 6 C 0.313 3.687 7 O -0.478 6.478 8 C -0.112 4.112 9 H 0.131 0.869 10 C -0.138 4.138 11 C -0.145 4.145 12 C -0.114 4.114 13 H 0.079 0.921 14 C -0.201 4.201 15 C -0.143 4.143 16 C -0.147 4.147 17 C -0.019 4.019 18 C -0.101 4.101 19 H 0.121 0.879 20 C -0.139 4.139 21 C 0.023 3.977 22 N -0.391 5.391 23 C -0.383 4.383 24 H 0.091 0.909 25 C -0.270 4.270 26 N -0.620 5.620 27 Si 0.805 3.195 28 H -0.207 1.207 29 H -0.218 1.218 30 H -0.200 1.200 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.072 0.928 46 H 0.108 0.892 47 H 0.088 0.912 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.089 0.911 51 H 0.044 0.956 52 H 0.027 0.973 53 H 0.205 0.795 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.472 -6.260 -31.302 33.027 hybrid contribution 1.087 0.118 1.683 2.007 sum -7.385 -6.142 -29.619 31.138 Atomic orbital electron populations 1.21711 0.91664 1.03157 1.02771 1.22298 0.97684 0.98933 0.92778 0.90632 1.22951 0.81121 0.99791 0.97974 1.48944 1.09683 1.65386 1.11162 1.21210 0.81351 0.76607 0.89574 1.90693 1.32067 1.50291 1.74720 1.21326 0.99029 1.02750 0.88127 0.86857 1.21320 0.94544 1.01336 0.96551 1.21584 0.99995 1.00147 0.92751 1.21178 0.95584 0.99247 0.95414 0.92086 1.21793 1.01847 1.01834 0.94666 1.21574 0.96520 1.02826 0.93408 1.21660 0.98777 0.98036 0.96269 1.22126 0.98621 0.99304 0.81819 1.22078 0.96135 0.97027 0.94846 0.87912 1.21623 1.00312 0.97822 0.94172 1.20879 0.95864 0.92716 0.88214 1.42604 1.77257 1.05304 1.13973 1.19617 1.33749 0.92300 0.92609 0.90861 1.25643 1.03278 0.95698 1.02384 1.69811 1.55355 1.02011 1.34841 0.85161 0.78371 0.76811 0.79126 1.20655 1.21763 1.19959 0.92773 0.90465 0.91111 0.87500 0.88302 0.93372 0.93177 0.90849 0.91618 0.92901 0.92056 0.92105 0.90393 0.90232 0.92803 0.89228 0.91193 0.93917 0.93791 0.91075 0.95623 0.97309 0.79536 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.16 71.98 0.66 -0.93 16 2 C -0.10 -1.62 3.19 -9.70 -0.03 -1.65 16 3 H 0.08 1.43 7.87 -2.38 -0.02 1.41 16 4 C 0.10 1.42 4.68 86.61 0.41 1.83 16 5 N -0.62 -14.68 3.29 -810.13 -2.66 -17.34 16 6 C 0.52 14.43 7.25 87.66 0.64 15.06 16 7 O -0.60 -23.11 16.32 -3.02 -0.05 -23.16 16 8 C -0.09 -1.65 1.84 -11.54 -0.02 -1.67 16 9 H 0.11 1.63 7.90 -2.39 -0.02 1.62 16 10 C -0.10 -1.98 4.49 30.60 0.14 -1.85 16 11 C -0.11 -1.44 5.20 30.59 0.16 -1.28 16 12 C -0.10 -1.03 2.72 -10.80 -0.03 -1.06 16 13 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 14 C -0.14 -1.19 9.19 71.98 0.66 -0.53 16 15 C -0.11 -0.91 5.20 30.59 0.16 -0.75 16 16 C -0.11 -1.35 4.94 30.59 0.15 -1.20 16 17 C 0.10 2.90 6.16 86.53 0.53 3.44 16 18 C -0.08 -1.91 2.61 -9.91 -0.03 -1.94 16 19 H 0.10 2.13 7.85 -2.39 -0.02 2.11 16 20 C -0.10 -3.31 4.53 30.59 0.14 -3.17 16 21 C 0.15 6.33 6.08 86.38 0.53 6.85 16 22 N -0.75 -40.68 5.60 -343.46 -1.92 -42.60 16 23 C -0.25 -14.86 9.99 84.03 0.84 -14.02 16 24 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 25 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 26 N -0.97 -61.54 13.06 21.65 0.28 -61.25 16 27 Si 0.98 47.93 29.55 68.60 2.03 49.96 16 28 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 29 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 30 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.68 8.10 -2.39 -0.02 0.66 16 34 H 0.11 0.97 6.54 -2.39 -0.02 0.95 16 35 H 0.10 0.96 7.84 -2.39 -0.02 0.94 16 36 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 37 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.08 0.51 8.14 -2.39 -0.02 0.50 16 44 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.09 0.80 5.31 -2.39 -0.01 0.79 16 47 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.04 1.56 6.64 -2.38 -0.02 1.54 16 49 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.07 2.25 8.14 -2.38 -0.02 2.24 16 51 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 52 H 0.01 0.40 6.88 -2.39 -0.02 0.38 16 53 H 0.37 21.34 7.67 -92.71 -0.71 20.63 16 54 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -77.23 408.94 3.17 -74.06 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.13 Total: 27.40 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 5.36 Total: -7.07 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -4.30 Total: -121.20 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.05 Total: -23.16 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -77.23 3.17 -74.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104931599.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.324 kcal (2) G-P(sol) polarization free energy of solvation -77.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds