Wall clock time and date at job start Tue Mar 31 2020 15:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.05236 * 2 1 4 4 C 1.54267 * 110.02994 * 238.58476 * 2 1 3 5 5 C 1.54883 * 104.19643 * 264.32386 * 4 2 1 6 6 C 1.54885 * 102.75190 * 322.05863 * 5 4 2 7 7 C 1.53874 * 110.03092 * 121.42238 * 2 1 3 8 8 H 1.08994 * 110.03512 * 359.94701 * 7 2 1 9 9 C 1.53008 * 110.02697 * 238.56755 * 7 2 1 10 10 C 1.50704 * 109.46563 * 175.00046 * 9 7 2 11 11 O 1.21276 * 120.00494 * 0.02562 * 10 9 7 12 12 N 1.34779 * 119.99733 * 180.27559 * 10 9 7 13 13 C 1.46501 * 120.00235 * 179.72478 * 12 10 9 14 14 C 1.53000 * 109.47132 * 175.98340 * 13 12 10 15 15 N 1.46500 * 109.47027 * 305.24978 * 14 13 12 16 16 C 1.36940 * 119.99603 * 300.07622 * 15 14 13 17 17 H 1.07996 * 120.00293 * 354.07220 * 16 15 14 18 18 C 1.38818 * 119.99526 * 174.07531 * 16 15 14 19 19 N 1.31620 * 119.99994 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 119.99731 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47756 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47198 * 120.00195 * 20 18 16 23 23 H 1.48498 * 109.47305 * 239.99862 * 20 18 16 24 24 C 1.53001 * 109.46666 * 185.24917 * 14 13 12 25 25 C 1.53000 * 109.46666 * 179.97438 * 24 14 13 26 26 C 1.52999 * 109.47227 * 60.00194 * 25 24 14 27 27 C 1.53001 * 109.47139 * 299.99516 * 26 25 24 28 28 C 1.52999 * 109.47227 * 65.25111 * 14 13 12 29 29 H 1.08994 * 109.46899 * 298.58017 * 1 2 3 30 30 H 1.09002 * 109.47175 * 58.58185 * 1 2 3 31 31 H 1.08997 * 109.46901 * 178.57963 * 1 2 3 32 32 H 1.08998 * 110.48704 * 23.00908 * 4 2 1 33 33 H 1.08998 * 110.48122 * 145.51188 * 4 2 1 34 34 H 1.09003 * 110.75517 * 80.37586 * 5 4 2 35 35 H 1.09007 * 110.75828 * 203.74464 * 5 4 2 36 36 H 1.09000 * 110.49159 * 279.26463 * 6 5 4 37 37 H 1.09004 * 110.48536 * 156.61678 * 6 5 4 38 38 H 1.09000 * 109.47342 * 55.00457 * 9 7 2 39 39 H 1.08991 * 109.46960 * 294.99810 * 9 7 2 40 40 H 0.97000 * 120.00039 * 359.72281 * 12 10 9 41 41 H 1.09001 * 109.46897 * 295.98192 * 13 12 10 42 42 H 1.08999 * 109.46781 * 55.98420 * 13 12 10 43 43 H 0.96996 * 119.99737 * 120.08341 * 15 14 13 44 44 H 0.96998 * 119.99621 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.47098 * 299.99794 * 24 14 13 46 46 H 1.08997 * 109.47336 * 60.00484 * 24 14 13 47 47 H 1.09002 * 109.47194 * 299.99735 * 25 24 14 48 48 H 1.08999 * 109.47170 * 179.97438 * 25 24 14 49 49 H 1.09004 * 109.46907 * 180.02562 * 26 25 24 50 50 H 1.09002 * 109.47408 * 59.99672 * 26 25 24 51 51 H 1.09002 * 109.47098 * 300.00347 * 27 26 25 52 52 H 1.08997 * 109.47336 * 179.97438 * 27 26 25 53 53 H 1.09006 * 109.47140 * 300.00013 * 28 14 13 54 54 H 1.09002 * 109.47408 * 59.99672 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 2.3281 -2.1901 -0.7192 6 6 2.8875 -1.9407 0.7034 7 6 2.0571 -0.7537 1.2336 8 1 1.2230 -1.1186 1.8328 9 6 2.9409 0.1703 2.0741 10 6 3.3498 -0.5397 3.3390 11 8 2.9720 -1.6731 3.5475 12 7 4.1312 0.0867 4.2409 13 6 4.5237 -0.6012 5.4733 14 6 5.4834 0.2858 6.2690 15 7 6.6156 0.6647 5.4200 16 6 7.4238 -0.3025 4.8848 17 1 7.2863 -1.3366 5.1641 18 6 8.4199 0.0464 3.9830 19 7 8.5879 1.3067 3.6430 20 14 9.5219 -1.2730 3.2523 21 1 9.1313 -2.5998 3.7930 22 1 9.3756 -1.2776 1.7745 23 1 10.9356 -0.9906 3.6088 24 6 5.9954 -0.4829 7.4889 25 6 6.9555 0.4039 8.2842 26 6 6.2213 1.6640 8.7467 27 6 5.7094 2.4327 7.5269 28 6 4.7486 1.5456 6.7316 29 1 -0.3633 0.4916 0.9024 30 1 -0.3633 0.5357 -0.8770 31 1 -0.3633 -1.0273 -0.0255 32 1 1.3061 -0.7695 -2.0255 33 1 2.9798 -0.2986 -1.5980 34 1 1.4031 -2.7651 -0.6753 35 1 3.0676 -2.6931 -1.3424 36 1 3.9440 -1.6767 0.6570 37 1 2.7401 -2.8198 1.3308 38 1 2.3852 1.0730 2.3276 39 1 3.8305 0.4390 1.5046 40 1 4.4337 0.9931 4.0740 41 1 3.6370 -0.8065 6.0730 42 1 5.0188 -1.5396 5.2236 43 1 6.7927 1.6007 5.2372 44 1 9.2837 1.5504 3.0126 45 1 5.1530 -0.7648 8.1205 46 1 6.5189 -1.3803 7.1594 47 1 7.7979 0.6854 7.6523 48 1 7.3200 -0.1435 9.1535 49 1 6.9056 2.2960 9.3130 50 1 5.3790 1.3825 9.3786 51 1 6.5517 2.7142 6.8950 52 1 5.1859 3.3302 7.8564 53 1 4.3838 2.0932 5.8625 54 1 3.9062 1.2636 7.3632 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115550772.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:59 Heat of formation + Delta-G solvation = -86.191873 kcal Electronic energy + Delta-G solvation = -29220.543184 eV Core-core repulsion = 25575.670130 eV Total energy + Delta-G solvation = -3644.873054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.10484 -40.14535 -38.96656 -35.83272 -35.00821 -33.02247 -32.28371 -31.86493 -31.55308 -30.24248 -27.75031 -26.48327 -25.70561 -24.94941 -23.44428 -21.92307 -21.56380 -20.99904 -20.19218 -19.79915 -19.03032 -17.90635 -17.05298 -16.69903 -16.44740 -16.16985 -15.93722 -15.79128 -15.55553 -15.18394 -14.91059 -14.54086 -14.30883 -14.28294 -14.14632 -13.74782 -13.40426 -13.37391 -13.25151 -13.13662 -12.92114 -12.85784 -12.83752 -12.59710 -12.46425 -12.04371 -11.92281 -11.84710 -11.74751 -11.69548 -11.58985 -11.45620 -11.43703 -11.27926 -11.22431 -11.14447 -10.84519 -10.69263 -10.56699 -9.80911 -8.89905 -7.88879 -5.12143 1.40635 1.45074 1.50371 1.81794 2.47345 2.58187 3.44618 3.64607 3.70041 3.78728 3.81898 3.92730 4.03054 4.10271 4.14655 4.34441 4.38602 4.41231 4.47647 4.48703 4.55503 4.65648 4.68288 4.71393 4.76598 4.76976 4.81184 4.81918 4.85064 4.92585 4.95108 4.98083 5.05292 5.08666 5.11275 5.18559 5.21958 5.25647 5.27758 5.34459 5.40450 5.47209 5.48801 5.50412 5.51422 5.59100 5.62225 5.63847 5.75283 5.79360 6.34867 6.77134 7.43365 7.44342 8.17014 8.43313 9.33755 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.003964 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.407832 B = 7062.370649 C = 8591.826802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.081 0.919 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.118 4.118 7 C -0.065 4.065 8 H 0.068 0.932 9 C -0.129 4.129 10 C 0.502 3.498 11 O -0.590 6.590 12 N -0.700 5.700 13 C 0.124 3.876 14 C 0.189 3.811 15 N -0.708 5.708 16 C -0.203 4.203 17 H 0.058 0.942 18 C -0.061 4.061 19 N -0.958 5.958 20 Si 0.941 3.059 21 H -0.281 1.281 22 H -0.300 1.300 23 H -0.296 1.296 24 C -0.116 4.116 25 C -0.106 4.106 26 C -0.108 4.108 27 C -0.113 4.113 28 C -0.107 4.107 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.045 0.955 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.405 0.595 41 H 0.062 0.938 42 H 0.026 0.974 43 H 0.377 0.623 44 H 0.246 0.754 45 H 0.072 0.928 46 H 0.034 0.966 47 H 0.041 0.959 48 H 0.057 0.943 49 H 0.061 0.939 50 H 0.074 0.926 51 H 0.043 0.957 52 H 0.076 0.924 53 H 0.062 0.938 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.449 2.652 -0.659 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 H 0.099 0.901 4 C -0.155 4.155 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.084 4.084 8 H 0.086 0.914 9 C -0.168 4.168 10 C 0.290 3.710 11 O -0.472 6.472 12 N -0.349 5.349 13 C -0.002 4.002 14 C 0.099 3.901 15 N -0.348 5.348 16 C -0.335 4.335 17 H 0.076 0.924 18 C -0.254 4.254 19 N -0.610 5.610 20 Si 0.773 3.227 21 H -0.206 1.206 22 H -0.228 1.228 23 H -0.224 1.224 24 C -0.156 4.156 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.150 4.150 28 C -0.145 4.145 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.134 0.866 39 H 0.110 0.890 40 H 0.241 0.759 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.211 0.789 44 H 0.055 0.945 45 H 0.090 0.910 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.092 0.908 51 H 0.062 0.938 52 H 0.094 0.906 53 H 0.080 0.920 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.640 1.698 -0.535 15.741 hybrid contribution 1.712 -0.454 -0.649 1.886 sum -13.928 1.244 -1.183 14.033 Atomic orbital electron populations 1.21846 0.93885 1.01795 1.02160 1.21812 0.96547 0.99416 0.93218 0.90093 1.22426 1.01155 0.94634 0.97261 1.22493 1.00714 0.97696 0.95023 1.22348 0.98338 0.98142 0.96705 1.21553 0.96941 0.94260 0.95634 0.91381 1.21864 1.01842 1.00183 0.92954 1.21243 0.77802 0.86408 0.85552 1.90609 1.57589 1.20134 1.78844 1.45801 1.50062 1.18760 1.20321 1.21657 0.97237 0.95585 0.85748 1.20036 0.86832 0.93703 0.89540 1.42454 1.29918 1.05466 1.56994 1.19194 1.08302 0.89680 1.16352 0.92426 1.25086 1.01790 0.97035 1.01476 1.69741 1.36350 1.15893 1.39006 0.85545 0.79400 0.79870 0.77836 1.20586 1.22812 1.22392 1.21811 0.98996 0.98019 0.96770 1.21311 0.98246 0.96554 0.98284 1.21456 0.99920 0.95945 0.97190 1.21453 0.98669 0.98144 0.96752 1.21672 0.98012 0.94913 0.99904 0.92559 0.91409 0.92990 0.90086 0.91858 0.91055 0.91725 0.93902 0.93563 0.86642 0.89025 0.75911 0.92033 0.95503 0.78853 0.94457 0.90963 0.94667 0.94024 0.92386 0.92053 0.90776 0.93788 0.90553 0.91959 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.83 71.98 0.64 -1.61 16 2 C -0.09 -1.76 3.16 -10.07 -0.03 -1.79 16 3 H 0.08 1.44 7.67 -2.39 -0.02 1.42 16 4 C -0.12 -2.22 6.37 31.67 0.20 -2.01 16 5 C -0.12 -2.71 6.91 31.88 0.22 -2.49 16 6 C -0.12 -3.41 5.43 31.67 0.17 -3.24 16 7 C -0.06 -1.65 2.20 -10.07 -0.02 -1.67 16 8 H 0.07 1.88 7.45 -2.39 -0.02 1.87 16 9 C -0.13 -3.43 4.83 29.85 0.14 -3.29 16 10 C 0.50 17.62 7.61 87.66 0.67 18.28 16 11 O -0.59 -24.66 14.82 -3.02 -0.04 -24.71 16 12 N -0.70 -24.27 5.14 -463.06 -2.38 -26.65 16 13 C 0.12 4.54 4.32 86.38 0.37 4.91 16 14 C 0.19 6.54 0.40 3.60 0.00 6.54 16 15 N -0.71 -30.84 3.55 -303.34 -1.08 -31.92 16 16 C -0.20 -10.46 8.72 84.03 0.73 -9.72 16 17 H 0.06 3.08 6.75 -2.91 -0.02 3.06 16 18 C -0.06 -3.36 5.50 84.86 0.47 -2.90 16 19 N -0.96 -55.07 13.07 21.65 0.28 -54.79 16 20 Si 0.94 46.47 29.55 68.60 2.03 48.50 16 21 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.30 -15.05 7.11 99.48 0.71 -14.35 16 23 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 24 C -0.12 -3.87 4.56 30.59 0.14 -3.73 16 25 C -0.11 -3.37 5.76 30.59 0.18 -3.20 16 26 C -0.11 -2.76 5.92 30.59 0.18 -2.58 16 27 C -0.11 -3.02 5.75 30.61 0.18 -2.84 16 28 C -0.11 -2.93 4.66 30.61 0.14 -2.79 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 1.25 7.84 -2.39 -0.02 1.23 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.04 1.39 7.76 -2.39 -0.02 1.37 16 37 H 0.05 1.55 7.66 -2.39 -0.02 1.53 16 38 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.09 2.51 8.00 -2.39 -0.02 2.49 16 40 H 0.41 13.40 7.27 -92.71 -0.67 12.72 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.03 1.18 7.58 -2.39 -0.02 1.16 16 43 H 0.38 17.70 6.53 -92.71 -0.61 17.10 16 44 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.03 1.35 7.16 -2.39 -0.02 1.33 16 47 H 0.04 1.65 7.60 -2.39 -0.02 1.63 16 48 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 52 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 53 H 0.06 1.66 7.11 -2.38 -0.02 1.65 16 54 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -63.16 403.95 2.77 -60.40 By element: Atomic # 1 Polarization: 43.71 SS G_CDS: -0.42 Total: 43.30 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 4.38 Total: -14.13 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -3.17 Total: -113.36 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.04 Total: -24.71 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -63.16 2.77 -60.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115550772.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.797 kcal (2) G-P(sol) polarization free energy of solvation -63.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds