Wall clock time and date at job start Tue Mar 31 2020 15:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.06051 * 2 1 4 4 C 1.54274 * 110.03015 * 121.41275 * 2 1 3 5 5 C 1.54887 * 104.19554 * 142.89537 * 4 2 1 6 6 C 1.54890 * 102.74684 * 322.05684 * 5 4 2 7 7 C 1.53870 * 110.03319 * 238.57701 * 2 1 3 8 8 H 1.09003 * 110.03308 * 121.43376 * 7 2 1 9 9 C 1.52996 * 110.03285 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47185 * 176.37816 * 9 7 2 11 11 O 1.21284 * 120.00236 * 0.02562 * 10 9 7 12 12 N 1.34774 * 120.00133 * 179.97438 * 10 9 7 13 13 C 1.46500 * 120.00414 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47548 * 176.62973 * 13 12 10 15 15 N 1.46498 * 109.47160 * 54.62868 * 14 13 12 16 16 C 1.36937 * 120.00163 * 62.83721 * 15 14 13 17 17 H 1.08006 * 120.00154 * 354.25807 * 16 15 14 18 18 C 1.38814 * 120.00459 * 174.25731 * 16 15 14 19 19 N 1.31620 * 119.99640 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00164 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47161 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47003 * 120.00019 * 20 18 16 23 23 H 1.48504 * 109.46983 * 239.99731 * 20 18 16 24 24 C 1.52997 * 109.47270 * 294.62931 * 14 13 12 25 25 C 1.52996 * 109.47533 * 179.97438 * 24 14 13 26 26 C 1.52998 * 109.46721 * 59.99830 * 25 24 14 27 27 C 1.52995 * 109.47679 * 300.00013 * 26 25 24 28 28 C 1.52998 * 109.47044 * 174.62724 * 14 13 12 29 29 H 1.09002 * 109.47167 * 181.42122 * 1 2 3 30 30 H 1.09003 * 109.47044 * 301.42287 * 1 2 3 31 31 H 1.09000 * 109.47067 * 61.41945 * 1 2 3 32 32 H 1.09000 * 110.48183 * 24.21466 * 4 2 1 33 33 H 1.09001 * 110.59891 * 261.62919 * 4 2 1 34 34 H 1.08997 * 110.75502 * 203.74411 * 5 4 2 35 35 H 1.08999 * 110.91651 * 80.44165 * 5 4 2 36 36 H 1.08995 * 110.48927 * 279.26347 * 6 5 4 37 37 H 1.09006 * 110.48278 * 156.62261 * 6 5 4 38 38 H 1.09000 * 109.47244 * 296.37402 * 9 7 2 39 39 H 1.09001 * 109.47381 * 56.37625 * 9 7 2 40 40 H 0.97004 * 120.00148 * 0.02562 * 12 10 9 41 41 H 1.09007 * 109.47133 * 296.63374 * 13 12 10 42 42 H 1.09002 * 109.47152 * 56.63034 * 13 12 10 43 43 H 0.97002 * 120.00275 * 242.84447 * 15 14 13 44 44 H 0.97001 * 120.00017 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.46938 * 300.00445 * 24 14 13 46 46 H 1.08998 * 109.46922 * 59.99379 * 24 14 13 47 47 H 1.09002 * 109.47090 * 300.00535 * 25 24 14 48 48 H 1.08995 * 109.47086 * 179.97438 * 25 24 14 49 49 H 1.09007 * 109.47373 * 179.97438 * 26 25 24 50 50 H 1.09002 * 109.47287 * 60.00460 * 26 25 24 51 51 H 1.09002 * 109.47126 * 300.00545 * 27 26 25 52 52 H 1.08997 * 109.47769 * 180.02562 * 27 26 25 53 53 H 1.08995 * 109.47246 * 299.99662 * 28 14 13 54 54 H 1.09002 * 109.47287 * 60.00336 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0584 -0.7554 1.2370 5 6 3.3136 -1.5007 0.7193 6 6 2.8874 -1.9407 -0.7033 7 6 2.0571 -0.7537 -1.2336 8 1 2.6868 -0.0955 -1.8324 9 6 0.8862 -1.2665 -2.0743 10 6 1.4145 -1.9243 -3.3230 11 8 2.6099 -1.9780 -3.5209 12 7 0.5587 -2.4537 -4.2195 13 6 1.0722 -3.0927 -5.4337 14 6 -0.0929 -3.6801 -6.2327 15 7 -1.0854 -2.6337 -6.4900 16 6 -0.7487 -1.5411 -7.2438 17 1 0.2715 -1.4042 -7.5707 18 6 -1.7186 -0.6096 -7.5878 19 7 -2.9620 -0.7767 -7.1898 20 14 -1.2594 0.8804 -8.6166 21 1 0.1904 0.8348 -8.9344 22 1 -2.0427 0.8712 -9.8782 23 1 -1.5612 2.1194 -7.8557 24 6 -0.7408 -4.8118 -5.4326 25 6 -1.9063 -5.3989 -6.2313 26 6 -1.3874 -5.9473 -7.5620 27 6 -0.7396 -4.8156 -8.3623 28 6 0.4265 -4.2286 -7.5632 29 1 -0.3633 -1.0274 0.0255 30 1 -0.3633 0.5358 0.8770 31 1 -0.3633 0.4916 -0.9024 32 1 1.3141 -1.4659 1.5967 33 1 2.3293 -0.0552 2.0272 34 1 3.5324 -2.3678 1.3425 35 1 4.1730 -0.8317 0.6755 36 1 2.2771 -2.8426 -0.6569 37 1 3.7637 -2.1039 -1.3307 38 1 0.3139 -1.9919 -1.4960 39 1 0.2422 -0.4309 -2.3484 40 1 -0.3974 -2.4111 -4.0611 41 1 1.5929 -2.3525 -6.0413 42 1 1.7636 -3.8897 -5.1603 43 1 -1.9810 -2.7146 -6.1264 44 1 -3.6399 -0.1259 -7.4305 45 1 -0.0024 -5.5904 -5.2411 46 1 -1.1107 -4.4210 -4.4847 47 1 -2.6446 -4.6200 -6.4224 48 1 -2.3675 -6.2054 -5.6614 49 1 -2.2176 -6.3660 -8.1310 50 1 -0.6491 -6.7261 -7.3710 51 1 -1.4779 -4.0368 -8.5533 52 1 -0.3703 -5.2062 -9.3105 53 1 0.8880 -3.4224 -8.1333 54 1 1.1649 -5.0073 -7.3718 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115550773.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:03 Heat of formation + Delta-G solvation = -81.081303 kcal Electronic energy + Delta-G solvation = -29251.652183 eV Core-core repulsion = 25607.000740 eV Total energy + Delta-G solvation = -3644.651443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.15975 -40.18785 -38.95921 -35.82581 -35.00907 -33.09975 -32.50111 -31.69354 -31.54423 -30.23524 -27.59352 -26.00279 -25.71090 -25.45415 -23.44491 -21.94948 -21.62645 -21.22558 -19.83929 -19.42141 -19.00987 -18.22744 -16.95553 -16.83763 -16.52908 -16.20750 -15.81822 -15.67026 -15.54445 -15.14597 -14.96325 -14.55840 -14.49011 -14.33204 -14.23148 -13.55449 -13.40614 -13.34720 -13.24331 -13.11084 -12.91259 -12.85640 -12.74178 -12.59468 -12.47471 -12.03257 -11.88391 -11.80230 -11.67845 -11.63938 -11.54684 -11.49766 -11.39488 -11.31763 -11.12682 -11.08888 -10.82937 -10.69765 -10.56457 -9.81403 -8.89807 -7.87738 -5.11651 1.42596 1.46953 1.52440 1.81728 2.46928 2.59389 3.45383 3.65649 3.71781 3.79452 3.82680 3.94226 4.02039 4.11362 4.15590 4.34575 4.40245 4.44757 4.46431 4.49268 4.56991 4.65248 4.67895 4.73282 4.76685 4.77150 4.80517 4.82116 4.90615 4.92936 4.96935 4.98106 5.08111 5.08596 5.14021 5.18192 5.18489 5.22168 5.32573 5.43080 5.46030 5.47726 5.50149 5.51705 5.54885 5.60448 5.61195 5.62785 5.74494 5.81087 6.35613 6.77660 7.43448 7.44762 8.17304 8.43917 9.34717 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011659 B = 0.003802 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.957656 B = 7363.658628 C = 8712.538235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.113 4.113 5 C -0.124 4.124 6 C -0.110 4.110 7 C -0.070 4.070 8 H 0.050 0.950 9 C -0.128 4.128 10 C 0.500 3.500 11 O -0.590 6.590 12 N -0.702 5.702 13 C 0.124 3.876 14 C 0.190 3.810 15 N -0.708 5.708 16 C -0.205 4.205 17 H 0.059 0.941 18 C -0.061 4.061 19 N -0.958 5.958 20 Si 0.943 3.057 21 H -0.280 1.280 22 H -0.298 1.298 23 H -0.299 1.299 24 C -0.106 4.106 25 C -0.112 4.112 26 C -0.108 4.108 27 C -0.106 4.106 28 C -0.114 4.114 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.406 0.594 41 H 0.026 0.974 42 H 0.062 0.938 43 H 0.378 0.622 44 H 0.246 0.754 45 H 0.081 0.919 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.075 0.925 49 H 0.059 0.941 50 H 0.073 0.927 51 H 0.041 0.959 52 H 0.056 0.944 53 H 0.036 0.964 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.379 -7.414 14.611 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.161 4.161 6 C -0.147 4.147 7 C -0.090 4.090 8 H 0.069 0.931 9 C -0.167 4.167 10 C 0.288 3.712 11 O -0.472 6.472 12 N -0.352 5.352 13 C -0.003 4.003 14 C 0.099 3.901 15 N -0.349 5.349 16 C -0.337 4.337 17 H 0.077 0.923 18 C -0.254 4.254 19 N -0.610 5.610 20 Si 0.776 3.224 21 H -0.205 1.205 22 H -0.226 1.226 23 H -0.227 1.227 24 C -0.144 4.144 25 C -0.150 4.150 26 C -0.145 4.145 27 C -0.144 4.144 28 C -0.154 4.154 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.242 0.758 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.211 0.789 44 H 0.055 0.945 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.094 0.906 49 H 0.078 0.922 50 H 0.092 0.908 51 H 0.059 0.941 52 H 0.074 0.926 53 H 0.055 0.945 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.301 -7.349 14.335 17.297 hybrid contribution -0.516 1.464 -1.200 1.962 sum 5.786 -5.885 13.134 15.512 Atomic orbital electron populations 1.22015 0.94316 1.02444 1.01877 1.21778 0.96369 0.99013 0.93772 0.91182 1.22428 0.97018 0.99030 0.96605 1.22504 0.98002 1.00223 0.95402 1.22305 0.99067 0.97158 0.96200 1.21505 0.94898 0.97031 0.95517 0.93100 1.21982 0.99951 1.01792 0.92976 1.21366 0.86276 0.77866 0.85709 1.90616 1.17293 1.60293 1.78954 1.45842 1.10503 1.57987 1.20833 1.21657 0.97062 0.95721 0.85870 1.20011 0.88552 0.88436 0.93065 1.42459 1.11350 1.20062 1.60981 1.19201 0.93028 0.98813 1.22671 0.92325 1.25112 0.95671 1.01422 1.03175 1.69750 1.01133 1.37666 1.52417 0.85513 0.76998 0.81196 0.78718 1.20518 1.22564 1.22668 1.21645 0.98189 0.96746 0.97827 1.21435 0.97438 0.99827 0.96273 1.21449 1.00004 0.97157 0.95892 1.21308 0.97578 0.97726 0.97755 1.21788 0.97741 0.99093 0.96745 0.91635 0.91861 0.92922 0.90718 0.90740 0.90722 0.91862 0.92091 0.93549 0.86756 0.88343 0.75835 0.95573 0.92027 0.78862 0.94459 0.90069 0.91866 0.93763 0.90650 0.92230 0.90832 0.94058 0.92554 0.94526 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 7.88 71.98 0.57 -1.96 16 2 C -0.09 -1.71 3.50 -10.07 -0.04 -1.74 16 3 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.11 -1.79 6.36 31.67 0.20 -1.59 16 5 C -0.12 -2.25 6.91 31.88 0.22 -2.02 16 6 C -0.11 -2.62 5.36 31.67 0.17 -2.45 16 7 C -0.07 -1.72 2.55 -10.07 -0.03 -1.75 16 8 H 0.05 1.50 7.97 -2.39 -0.02 1.48 16 9 C -0.13 -3.21 3.88 29.85 0.12 -3.10 16 10 C 0.50 16.80 7.60 87.66 0.67 17.46 16 11 O -0.59 -23.80 14.75 -3.04 -0.04 -23.85 16 12 N -0.70 -23.59 5.09 -463.05 -2.36 -25.95 16 13 C 0.12 4.45 4.37 86.38 0.38 4.83 16 14 C 0.19 6.56 0.41 3.60 0.00 6.56 16 15 N -0.71 -30.62 3.40 -303.35 -1.03 -31.65 16 16 C -0.20 -10.44 8.70 84.03 0.73 -9.71 16 17 H 0.06 3.10 6.77 -2.91 -0.02 3.08 16 18 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 19 N -0.96 -54.72 13.07 21.65 0.28 -54.44 16 20 Si 0.94 45.89 29.55 68.60 2.03 47.91 16 21 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 22 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 23 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 24 C -0.11 -2.95 4.65 30.59 0.14 -2.81 16 25 C -0.11 -3.10 5.75 30.59 0.18 -2.92 16 26 C -0.11 -2.87 5.92 30.59 0.18 -2.69 16 27 C -0.11 -3.49 5.77 30.61 0.18 -3.31 16 28 C -0.11 -3.86 4.52 30.61 0.14 -3.72 16 29 H 0.06 1.02 6.82 -2.39 -0.02 1.01 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.98 6.65 -2.39 -0.02 0.97 16 32 H 0.07 1.07 7.84 -2.39 -0.02 1.05 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.41 7.78 -2.39 -0.02 1.39 16 37 H 0.05 1.34 7.60 -2.38 -0.02 1.32 16 38 H 0.11 2.32 6.86 -2.39 -0.02 2.30 16 39 H 0.10 2.45 6.51 -2.39 -0.02 2.43 16 40 H 0.41 13.09 7.39 -92.71 -0.69 12.40 16 41 H 0.03 1.12 7.51 -2.38 -0.02 1.10 16 42 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.38 17.57 6.63 -92.71 -0.61 16.95 16 44 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 45 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.06 1.69 7.28 -2.39 -0.02 1.68 16 47 H 0.04 1.51 6.92 -2.39 -0.02 1.49 16 48 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 50 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.04 1.71 7.60 -2.39 -0.02 1.69 16 52 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 53 H 0.04 1.41 7.23 -2.39 -0.02 1.40 16 54 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -62.13 398.18 2.72 -59.41 By element: Atomic # 1 Polarization: 42.76 SS G_CDS: -0.43 Total: 42.33 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 4.27 Total: -13.77 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -3.11 Total: -112.04 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.04 Total: -23.85 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -62.13 2.72 -59.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115550773.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.672 kcal (2) G-P(sol) polarization free energy of solvation -62.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds