Wall clock time and date at job start Tue Mar 31 2020 15:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.05655 * 2 1 4 4 C 1.54371 * 110.04340 * 238.52767 * 2 1 3 5 5 C 1.54891 * 104.20080 * 217.09002 * 4 2 1 6 6 C 1.54891 * 102.74434 * 37.96792 * 5 4 2 7 7 C 1.53872 * 110.03257 * 121.41894 * 2 1 3 8 8 H 1.09003 * 110.02953 * 238.61265 * 7 2 1 9 9 C 1.52997 * 110.03500 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47106 * 184.30960 * 9 7 2 11 11 O 1.21275 * 119.99956 * 0.02562 * 10 9 7 12 12 N 1.34781 * 119.99722 * 179.97438 * 10 9 7 13 13 C 1.46502 * 119.99662 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46929 * 177.71678 * 13 12 10 15 15 N 1.46503 * 109.47181 * 54.62125 * 14 13 12 16 16 C 1.36930 * 120.00430 * 59.72859 * 15 14 13 17 17 H 1.08003 * 119.99649 * 5.85855 * 16 15 14 18 18 C 1.38813 * 120.00619 * 185.85570 * 16 15 14 19 19 N 1.31619 * 119.99346 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00144 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47276 * 90.00448 * 20 18 16 22 22 H 1.48511 * 109.46815 * 210.00018 * 20 18 16 23 23 H 1.48497 * 109.47189 * 330.00100 * 20 18 16 24 24 C 1.53004 * 109.47228 * 294.61939 * 14 13 12 25 25 C 1.53001 * 109.47228 * 179.97438 * 24 14 13 26 26 C 1.52997 * 109.46849 * 60.00132 * 25 24 14 27 27 C 1.53005 * 109.46947 * 299.99592 * 26 25 24 28 28 C 1.52992 * 109.47024 * 60.00717 * 27 26 25 29 29 H 1.09005 * 109.46939 * 298.58013 * 1 2 3 30 30 H 1.08996 * 109.47487 * 58.58188 * 1 2 3 31 31 H 1.08996 * 109.47292 * 178.58808 * 1 2 3 32 32 H 1.09005 * 110.46598 * 98.42277 * 4 2 1 33 33 H 1.09008 * 110.51106 * 335.78154 * 4 2 1 34 34 H 1.08997 * 110.75399 * 279.65878 * 5 4 2 35 35 H 1.08997 * 110.75812 * 156.28170 * 5 4 2 36 36 H 1.09003 * 110.48648 * 203.38248 * 6 5 4 37 37 H 1.08999 * 110.48868 * 80.73881 * 6 5 4 38 38 H 1.09006 * 109.46972 * 64.31111 * 9 7 2 39 39 H 1.09002 * 109.47153 * 304.31080 * 9 7 2 40 40 H 0.96999 * 120.00353 * 0.02562 * 12 10 9 41 41 H 1.08994 * 109.47086 * 57.71851 * 13 12 10 42 42 H 1.09005 * 109.47204 * 297.71345 * 13 12 10 43 43 H 0.97003 * 119.99691 * 239.73553 * 15 14 13 44 44 H 0.97002 * 119.99774 * 179.97438 * 19 18 16 45 45 H 1.09003 * 109.46682 * 300.00152 * 24 14 13 46 46 H 1.09007 * 109.46808 * 59.99937 * 24 14 13 47 47 H 1.08992 * 109.46547 * 179.97438 * 25 24 14 48 48 H 1.08996 * 109.46686 * 300.00123 * 25 24 14 49 49 H 1.09003 * 109.46861 * 180.02562 * 26 25 24 50 50 H 1.08994 * 109.47465 * 59.99705 * 26 25 24 51 51 H 1.08995 * 109.47636 * 300.00184 * 27 26 25 52 52 H 1.09007 * 109.46657 * 180.02562 * 27 26 25 53 53 H 1.09002 * 109.47229 * 179.97438 * 28 27 26 54 54 H 1.09003 * 109.47579 * 59.99871 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0591 -0.7571 -1.2369 5 6 3.3146 -1.5015 -0.7184 6 6 2.8882 -1.9406 0.7044 7 6 2.0571 -0.7536 1.2337 8 1 2.6861 -0.0951 1.8328 9 6 0.8863 -1.2664 2.0744 10 6 1.4138 -1.9091 3.3313 11 8 2.6086 -1.9522 3.5347 12 7 0.5578 -2.4350 4.2297 13 6 1.0707 -3.0592 5.4518 14 6 -0.1020 -3.5207 6.3195 15 7 -0.9780 -4.3927 5.5330 16 6 -0.4853 -5.5501 4.9920 17 1 0.5207 -5.8685 5.2225 18 6 -1.2787 -6.3143 4.1473 19 7 -2.5045 -5.9260 3.8661 20 14 -0.6067 -7.8935 3.4099 21 1 -0.9090 -9.0307 4.3158 22 1 -1.2406 -8.1315 2.0881 23 1 0.8636 -7.7738 3.2394 24 6 -0.8927 -2.3016 6.7987 25 6 -2.0657 -2.7632 7.6658 26 6 -1.5332 -3.5334 8.8758 27 6 -0.7426 -4.7526 8.3966 28 6 0.4304 -4.2911 7.5295 29 1 -0.3633 0.4917 0.9025 30 1 -0.3634 0.5357 -0.8769 31 1 -0.3634 -1.0273 -0.0253 32 1 2.3303 -0.0557 -2.0260 33 1 1.3153 -1.4683 -1.5964 34 1 4.1715 -0.8294 -0.6746 35 1 3.5339 -2.3689 -1.3409 36 1 3.7644 -2.1029 1.3322 37 1 2.2783 -2.8429 0.6585 38 1 0.3211 -2.0009 1.5005 39 1 0.2357 -0.4326 2.3382 40 1 -0.3979 -2.4002 4.0671 41 1 1.6697 -2.3362 6.0053 42 1 1.6885 -3.9181 5.1894 43 1 -1.9070 -4.1501 5.3954 44 1 -3.0588 -6.4598 3.2756 45 1 -0.2408 -1.6529 7.3838 46 1 -1.2724 -1.7531 5.9366 47 1 -2.6286 -1.8946 8.0075 48 1 -2.7172 -3.4117 7.0802 49 1 -2.3689 -3.8626 9.4934 50 1 -0.8816 -2.8850 9.4613 51 1 -1.3942 -5.4011 7.8111 52 1 -0.3636 -5.3016 9.2587 53 1 0.9939 -5.1595 7.1885 54 1 1.0821 -3.6426 8.1151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115550774.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:07 Heat of formation + Delta-G solvation = -80.998415 kcal Electronic energy + Delta-G solvation = -29367.558941 eV Core-core repulsion = 25722.911093 eV Total energy + Delta-G solvation = -3644.647848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.15467 -40.19113 -38.96181 -35.83733 -34.99603 -33.10541 -32.51484 -31.69652 -31.55113 -30.23743 -27.60752 -26.01867 -25.70707 -25.45428 -23.45066 -21.95762 -21.65352 -21.22487 -19.83998 -19.42102 -19.00403 -18.23790 -17.02015 -16.70358 -16.55851 -16.23371 -15.91352 -15.60783 -15.53863 -15.16938 -14.93170 -14.69122 -14.43222 -14.34133 -14.18463 -13.60112 -13.40050 -13.33071 -13.25926 -13.11008 -12.91551 -12.83007 -12.78774 -12.59999 -12.49146 -12.07054 -11.92014 -11.83215 -11.69095 -11.65896 -11.57742 -11.49856 -11.40021 -11.21765 -11.14468 -11.13278 -10.83529 -10.70375 -10.56249 -9.80217 -8.90218 -7.88191 -5.11781 1.42184 1.45526 1.50386 1.82013 2.48277 2.58883 3.45088 3.64673 3.69540 3.79037 3.81747 3.93278 4.02930 4.10691 4.14688 4.34250 4.40612 4.43618 4.43820 4.48922 4.53168 4.65537 4.68566 4.74105 4.76251 4.76774 4.79521 4.81620 4.89972 4.92314 4.93479 4.97945 5.07760 5.08318 5.10496 5.16711 5.18664 5.21991 5.29704 5.42196 5.42774 5.47050 5.48680 5.51232 5.51745 5.59152 5.62053 5.63243 5.75648 5.79279 6.35195 6.78243 7.43686 7.44727 8.17071 8.43717 9.34173 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011181 B = 0.004073 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.696641 B = 6872.651310 C = 8208.517119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 H 0.083 0.917 4 C -0.117 4.117 5 C -0.123 4.123 6 C -0.116 4.116 7 C -0.066 4.066 8 H 0.066 0.934 9 C -0.128 4.128 10 C 0.500 3.500 11 O -0.590 6.590 12 N -0.701 5.701 13 C 0.125 3.875 14 C 0.190 3.810 15 N -0.708 5.708 16 C -0.204 4.204 17 H 0.058 0.942 18 C -0.061 4.061 19 N -0.958 5.958 20 Si 0.942 3.058 21 H -0.293 1.293 22 H -0.299 1.299 23 H -0.286 1.286 24 C -0.107 4.107 25 C -0.112 4.112 26 C -0.108 4.108 27 C -0.106 4.106 28 C -0.116 4.116 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.405 0.595 41 H 0.061 0.939 42 H 0.025 0.975 43 H 0.378 0.622 44 H 0.247 0.753 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.044 0.956 49 H 0.061 0.939 50 H 0.073 0.927 51 H 0.041 0.959 52 H 0.057 0.943 53 H 0.035 0.965 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.688 14.614 -1.271 15.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 H 0.102 0.898 4 C -0.155 4.155 5 C -0.161 4.161 6 C -0.154 4.154 7 C -0.085 4.085 8 H 0.084 0.916 9 C -0.168 4.168 10 C 0.287 3.713 11 O -0.472 6.472 12 N -0.350 5.350 13 C -0.002 4.002 14 C 0.099 3.901 15 N -0.349 5.349 16 C -0.337 4.337 17 H 0.076 0.924 18 C -0.254 4.254 19 N -0.610 5.610 20 Si 0.775 3.225 21 H -0.220 1.220 22 H -0.225 1.225 23 H -0.212 1.212 24 C -0.145 4.145 25 C -0.150 4.150 26 C -0.145 4.145 27 C -0.144 4.144 28 C -0.156 4.156 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.135 0.865 40 H 0.241 0.759 41 H 0.079 0.921 42 H 0.044 0.956 43 H 0.212 0.788 44 H 0.056 0.944 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.063 0.937 49 H 0.080 0.920 50 H 0.092 0.908 51 H 0.060 0.940 52 H 0.076 0.924 53 H 0.054 0.946 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.624 14.445 -1.168 15.212 hybrid contribution -0.304 -1.752 -0.604 1.878 sum 4.319 12.693 -1.773 13.524 Atomic orbital electron populations 1.22018 0.94392 1.01880 1.02411 1.21798 0.96288 0.99295 0.93203 0.89825 1.22476 0.96727 0.98994 0.97257 1.22501 0.98411 1.00088 0.95074 1.22340 0.99120 0.97280 0.96663 1.21501 0.94766 0.96551 0.95724 0.91575 1.21985 1.00092 1.01904 0.92770 1.21358 0.86265 0.78094 0.85535 1.90606 1.17224 1.60777 1.78608 1.45835 1.10568 1.57619 1.21020 1.21635 0.97058 0.95467 0.86017 1.20027 0.89547 0.90687 0.89802 1.42457 1.09725 1.22185 1.60484 1.19157 0.97076 0.98751 1.18706 0.92388 1.25093 0.96943 1.01437 1.01895 1.69736 1.08642 1.40513 1.42059 0.85604 0.77221 0.82094 0.77629 1.22025 1.22540 1.21171 1.21653 0.97451 0.95824 0.99531 1.21440 0.97287 0.99761 0.96509 1.21457 0.99417 0.96502 0.97151 1.21310 0.97075 0.98025 0.97973 1.21810 0.97778 0.99373 0.96630 0.91668 0.91738 0.93046 0.90189 0.91812 0.90959 0.91638 0.93475 0.93906 0.88878 0.86509 0.75872 0.92057 0.95619 0.78834 0.94432 0.90038 0.92010 0.90598 0.93725 0.92027 0.90836 0.93980 0.92380 0.94564 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 7.89 71.98 0.57 -2.01 16 2 C -0.09 -1.65 3.51 -10.03 -0.04 -1.69 16 3 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 4 C -0.12 -2.16 6.36 31.71 0.20 -1.96 16 5 C -0.12 -2.66 6.91 31.89 0.22 -2.44 16 6 C -0.12 -3.30 5.39 31.67 0.17 -3.12 16 7 C -0.07 -1.67 2.55 -10.07 -0.03 -1.69 16 8 H 0.07 1.80 7.95 -2.39 -0.02 1.78 16 9 C -0.13 -3.38 3.88 29.85 0.12 -3.27 16 10 C 0.50 17.40 7.61 87.66 0.67 18.06 16 11 O -0.59 -24.39 14.78 -3.01 -0.04 -24.43 16 12 N -0.70 -24.43 5.10 -463.06 -2.36 -26.79 16 13 C 0.12 4.58 4.31 86.38 0.37 4.95 16 14 C 0.19 6.58 0.41 3.60 0.00 6.58 16 15 N -0.71 -30.70 3.46 -303.33 -1.05 -31.75 16 16 C -0.20 -10.46 8.72 84.03 0.73 -9.73 16 17 H 0.06 3.07 6.76 -2.91 -0.02 3.05 16 18 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 19 N -0.96 -54.70 13.07 21.65 0.28 -54.42 16 20 Si 0.94 46.13 29.55 68.60 2.03 48.16 16 21 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 22 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 23 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 24 C -0.11 -2.96 4.66 30.60 0.14 -2.82 16 25 C -0.11 -3.04 5.75 30.59 0.18 -2.86 16 26 C -0.11 -2.78 5.92 30.60 0.18 -2.59 16 27 C -0.11 -3.37 5.76 30.59 0.18 -3.20 16 28 C -0.12 -3.87 4.57 30.59 0.14 -3.73 16 29 H 0.06 1.03 6.63 -2.38 -0.02 1.01 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 1.00 6.84 -2.39 -0.02 0.98 16 32 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.06 1.22 7.84 -2.38 -0.02 1.20 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.54 7.63 -2.39 -0.02 1.52 16 37 H 0.04 1.35 7.77 -2.39 -0.02 1.33 16 38 H 0.09 2.53 6.88 -2.38 -0.02 2.52 16 39 H 0.12 2.45 6.47 -2.39 -0.02 2.43 16 40 H 0.41 13.73 7.37 -92.71 -0.68 13.04 16 41 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.03 1.12 7.57 -2.38 -0.02 1.10 16 43 H 0.38 17.63 6.52 -92.71 -0.60 17.03 16 44 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 45 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.06 1.68 7.26 -2.38 -0.02 1.67 16 47 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.04 1.47 6.85 -2.39 -0.02 1.46 16 49 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.04 1.66 7.60 -2.39 -0.02 1.64 16 52 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 53 H 0.04 1.38 7.18 -2.39 -0.02 1.36 16 54 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -62.23 398.11 2.71 -59.52 By element: Atomic # 1 Polarization: 44.51 SS G_CDS: -0.42 Total: 44.09 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 4.27 Total: -14.38 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -3.13 Total: -112.96 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.04 Total: -24.43 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -62.23 2.71 -59.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115550774.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.480 kcal (2) G-P(sol) polarization free energy of solvation -62.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds