Wall clock time and date at job start Tue Mar 31 2020 15:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.01446 * 2 1 4 4 C 1.53880 * 110.07094 * 121.41368 * 2 1 3 5 5 C 1.54268 * 106.59682 * 119.30815 * 4 2 1 6 6 C 1.54892 * 104.19758 * 23.61117 * 5 4 2 7 7 C 1.54264 * 110.03723 * 238.60550 * 2 1 3 8 8 H 1.09006 * 110.48527 * 335.73982 * 7 2 1 9 9 C 1.52998 * 110.48742 * 98.24500 * 7 2 1 10 10 C 1.50699 * 109.47513 * 183.16024 * 9 7 2 11 11 O 1.21278 * 119.99634 * 0.02562 * 10 9 7 12 12 N 1.34770 * 120.00315 * 179.97438 * 10 9 7 13 13 C 1.46499 * 120.00324 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47194 * 175.98318 * 13 12 10 15 15 N 1.46497 * 109.47372 * 305.24966 * 14 13 12 16 16 C 1.36941 * 119.99990 * 300.07640 * 15 14 13 17 17 H 1.07996 * 119.99969 * 354.07520 * 16 15 14 18 18 C 1.38815 * 119.99788 * 174.06747 * 16 15 14 19 19 N 1.31619 * 120.00198 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99820 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46976 * 90.00325 * 20 18 16 22 22 H 1.48499 * 109.46752 * 210.00255 * 20 18 16 23 23 H 1.48494 * 109.47217 * 330.00461 * 20 18 16 24 24 C 1.53006 * 109.46962 * 185.24961 * 14 13 12 25 25 C 1.52998 * 109.47092 * 180.02562 * 24 14 13 26 26 C 1.52998 * 109.47082 * 59.99766 * 25 24 14 27 27 C 1.52992 * 109.47248 * 300.00013 * 26 25 24 28 28 C 1.52998 * 109.47253 * 60.00526 * 27 26 25 29 29 H 1.08998 * 109.47050 * 181.39211 * 1 2 3 30 30 H 1.08994 * 109.47397 * 301.39107 * 1 2 3 31 31 H 1.09006 * 109.46802 * 61.39619 * 1 2 3 32 32 H 1.08997 * 110.03460 * 238.59349 * 4 2 1 33 33 H 1.09000 * 110.02864 * 0.02606 * 4 2 1 34 34 H 1.09005 * 110.48430 * 142.28505 * 5 4 2 35 35 H 1.08999 * 110.48676 * 264.80454 * 5 4 2 36 36 H 1.08992 * 110.75955 * 203.74185 * 6 5 4 37 37 H 1.09008 * 110.75643 * 80.36874 * 6 5 4 38 38 H 1.09008 * 109.47123 * 303.16305 * 9 7 2 39 39 H 1.09006 * 109.47155 * 63.15999 * 9 7 2 40 40 H 0.97007 * 120.00123 * 0.02562 * 12 10 9 41 41 H 1.08999 * 109.47273 * 295.99104 * 13 12 10 42 42 H 1.09005 * 109.46869 * 55.98667 * 13 12 10 43 43 H 0.96996 * 119.99873 * 120.07927 * 15 14 13 44 44 H 0.96999 * 120.00135 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.47206 * 300.00228 * 24 14 13 46 46 H 1.09003 * 109.46746 * 60.00016 * 24 14 13 47 47 H 1.09006 * 109.47049 * 299.99946 * 25 24 14 48 48 H 1.08997 * 109.46915 * 180.02562 * 25 24 14 49 49 H 1.09005 * 109.46848 * 180.02562 * 26 25 24 50 50 H 1.08996 * 109.46997 * 60.00242 * 26 25 24 51 51 H 1.08996 * 109.47308 * 300.00038 * 27 26 25 52 52 H 1.09001 * 109.47108 * 180.02562 * 27 26 25 53 53 H 1.08999 * 109.47723 * 180.02562 * 28 27 26 54 54 H 1.08997 * 109.47552 * 59.99028 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0581 -0.7533 1.2335 5 6 2.8890 -1.9398 0.7028 6 6 3.3145 -1.4995 -0.7199 7 6 2.0586 -0.7550 -1.2371 8 1 1.3147 -1.4660 -1.5967 9 6 2.4351 0.2304 -2.3453 10 6 2.8744 -0.5328 -3.5683 11 8 2.8847 -1.7454 -3.5549 12 7 3.2547 0.1322 -4.6771 13 6 3.6812 -0.6097 -5.8661 14 6 3.9613 0.3715 -7.0062 15 7 2.7821 1.2119 -7.2282 16 6 1.5868 0.6378 -7.5703 17 1 1.5344 -0.4222 -7.7700 18 6 0.4425 1.4185 -7.6601 19 7 0.5064 2.7105 -7.4170 20 14 -1.1882 0.6353 -8.1261 21 1 -1.8909 0.1868 -6.8972 22 1 -2.0279 1.6292 -8.8418 23 1 -0.9419 -0.5325 -9.0096 24 6 4.2796 -0.4084 -8.2836 25 6 4.5604 0.5727 -9.4235 26 6 5.7541 1.4556 -9.0541 27 6 5.4359 2.2353 -7.7769 28 6 5.1552 1.2543 -6.6369 29 1 -0.3633 -1.0273 0.0250 30 1 -0.3634 0.5352 0.8772 31 1 -0.3633 0.4920 -0.9023 32 1 2.6874 -0.0948 1.8321 33 1 1.2243 -1.1197 1.8324 34 1 3.7657 -2.1023 1.3299 35 1 2.2800 -2.8427 0.6587 36 1 3.5337 -2.3663 -1.3432 37 1 4.1714 -0.8271 -0.6762 38 1 1.5707 0.8468 -2.5926 39 1 3.2501 0.8682 -2.0029 40 1 3.2461 1.1022 -4.6878 41 1 4.5875 -1.1708 -5.6386 42 1 2.8924 -1.2996 -6.1662 43 1 2.8480 2.1749 -7.1329 44 1 -0.2931 3.2560 -7.4802 45 1 5.1570 -1.0336 -8.1184 46 1 3.4292 -1.0376 -8.5464 47 1 3.6832 1.1984 -9.5887 48 1 4.7866 0.0172 -10.3335 49 1 5.9538 2.1549 -9.8661 50 1 6.6312 0.8300 -8.8888 51 1 4.5587 2.8609 -7.9421 52 1 6.2862 2.8646 -7.5140 53 1 4.9280 1.8097 -5.7270 54 1 6.0323 0.6286 -6.4717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115550775.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:11 Heat of formation + Delta-G solvation = -86.610354 kcal Electronic energy + Delta-G solvation = -29156.527552 eV Core-core repulsion = 25511.636352 eV Total energy + Delta-G solvation = -3644.891200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.08235 -40.11711 -38.92793 -35.83023 -35.00402 -33.02738 -32.29022 -32.03854 -31.55275 -30.23882 -27.68285 -26.31739 -25.69772 -24.97657 -23.44562 -21.94364 -21.53441 -20.95204 -20.34284 -19.79670 -19.02825 -17.88483 -17.03632 -16.73586 -16.35264 -16.18699 -15.85292 -15.64053 -15.59391 -15.13135 -14.93194 -14.66226 -14.46038 -14.31708 -14.06330 -13.71781 -13.57562 -13.39489 -13.24952 -13.05361 -12.92675 -12.85848 -12.70249 -12.59005 -12.47024 -12.05878 -11.92001 -11.85345 -11.80568 -11.68890 -11.58951 -11.47767 -11.39724 -11.21932 -11.19672 -11.14005 -10.83828 -10.69111 -10.55877 -9.80435 -8.89553 -7.88211 -5.11641 1.42035 1.45570 1.50093 1.81981 2.47506 2.58691 3.45063 3.64534 3.72929 3.79983 3.82654 3.92982 4.03573 4.10859 4.15137 4.34808 4.39944 4.43491 4.45196 4.49036 4.56581 4.65010 4.67138 4.71251 4.76879 4.77201 4.80331 4.81751 4.83048 4.93279 4.97569 4.98803 5.04348 5.08980 5.15212 5.18789 5.19692 5.22213 5.31569 5.34024 5.40128 5.47616 5.49104 5.51695 5.55802 5.59294 5.61898 5.63108 5.75756 5.79591 6.35259 6.77512 7.43820 7.44783 8.17531 8.43825 9.34146 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011419 B = 0.003885 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.432849 B = 7204.782584 C = 8792.440178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.084 0.916 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.114 4.114 7 C -0.070 4.070 8 H 0.052 0.948 9 C -0.127 4.127 10 C 0.503 3.497 11 O -0.590 6.590 12 N -0.700 5.700 13 C 0.124 3.876 14 C 0.190 3.810 15 N -0.708 5.708 16 C -0.205 4.205 17 H 0.058 0.942 18 C -0.061 4.061 19 N -0.958 5.958 20 Si 0.942 3.058 21 H -0.299 1.299 22 H -0.297 1.297 23 H -0.280 1.280 24 C -0.116 4.116 25 C -0.106 4.106 26 C -0.108 4.108 27 C -0.113 4.113 28 C -0.107 4.107 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.405 0.595 41 H 0.062 0.938 42 H 0.027 0.973 43 H 0.378 0.622 44 H 0.246 0.754 45 H 0.072 0.928 46 H 0.034 0.966 47 H 0.041 0.959 48 H 0.057 0.943 49 H 0.061 0.939 50 H 0.074 0.926 51 H 0.043 0.957 52 H 0.076 0.924 53 H 0.062 0.938 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.766 -1.966 12.198 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.102 0.898 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.152 4.152 7 C -0.089 4.089 8 H 0.071 0.929 9 C -0.167 4.167 10 C 0.291 3.709 11 O -0.472 6.472 12 N -0.349 5.349 13 C -0.002 4.002 14 C 0.099 3.901 15 N -0.348 5.348 16 C -0.337 4.337 17 H 0.076 0.924 18 C -0.254 4.254 19 N -0.610 5.610 20 Si 0.774 3.226 21 H -0.227 1.227 22 H -0.224 1.224 23 H -0.206 1.206 24 C -0.156 4.156 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.150 4.150 28 C -0.145 4.145 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.134 0.866 40 H 0.241 0.759 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.211 0.789 44 H 0.055 0.945 45 H 0.090 0.910 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.092 0.908 51 H 0.062 0.938 52 H 0.094 0.906 53 H 0.080 0.920 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.644 -2.930 12.143 16.411 hybrid contribution -1.748 0.180 -0.805 1.933 sum 8.895 -2.750 11.338 14.671 Atomic orbital electron populations 1.21893 0.95166 1.01495 1.01750 1.21809 0.95607 0.99802 0.93692 0.89812 1.22200 0.99582 0.96760 0.96685 1.22339 0.99878 0.98094 0.95679 1.22482 0.96923 0.99659 0.96116 1.21759 0.97710 0.95849 0.93564 0.92928 1.21755 1.03603 0.99030 0.92300 1.21217 0.76236 0.88075 0.85410 1.90607 1.56119 1.15773 1.84677 1.45797 1.66078 1.10759 1.12290 1.21659 0.97649 0.94786 0.86137 1.20036 0.87705 0.90682 0.91680 1.42447 1.04869 1.05253 1.82280 1.19162 0.86780 0.92512 1.35261 0.92426 1.25091 0.99536 0.96110 1.04624 1.69733 1.28012 1.04712 1.58499 0.85608 0.82428 0.77309 0.77248 1.22747 1.22370 1.20579 1.21811 0.99936 0.97803 0.96045 1.21310 0.98371 0.97661 0.97058 1.21452 0.97471 0.98289 0.97289 1.21440 1.00936 0.97657 0.94984 1.21660 0.96773 0.97756 0.98303 0.93276 0.91269 0.93722 0.90515 0.91250 0.90609 0.92543 0.93294 0.91154 0.89059 0.86627 0.75908 0.92022 0.95480 0.78853 0.94452 0.90971 0.94665 0.94033 0.92402 0.92052 0.90778 0.93798 0.90553 0.91957 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.84 71.98 0.64 -2.32 16 2 C -0.09 -1.80 3.07 -10.07 -0.03 -1.83 16 3 H 0.08 1.49 7.84 -2.39 -0.02 1.47 16 4 C -0.11 -1.95 6.46 31.32 0.20 -1.74 16 5 C -0.12 -2.37 6.83 31.67 0.22 -2.16 16 6 C -0.11 -2.78 5.70 31.89 0.18 -2.60 16 7 C -0.07 -1.80 1.98 -9.72 -0.02 -1.82 16 8 H 0.05 1.66 7.67 -2.38 -0.02 1.64 16 9 C -0.13 -3.40 5.06 29.85 0.15 -3.25 16 10 C 0.50 17.63 7.63 87.66 0.67 18.30 16 11 O -0.59 -24.66 14.62 -3.02 -0.04 -24.71 16 12 N -0.70 -24.23 5.14 -463.07 -2.38 -26.61 16 13 C 0.12 4.53 4.32 86.38 0.37 4.90 16 14 C 0.19 6.54 0.40 3.61 0.00 6.54 16 15 N -0.71 -30.84 3.56 -303.33 -1.08 -31.92 16 16 C -0.20 -10.55 8.73 84.03 0.73 -9.81 16 17 H 0.06 3.07 6.75 -2.91 -0.02 3.05 16 18 C -0.06 -3.34 5.50 84.86 0.47 -2.88 16 19 N -0.96 -54.98 13.07 21.65 0.28 -54.70 16 20 Si 0.94 46.38 29.55 68.60 2.03 48.40 16 21 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 22 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 23 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 24 C -0.12 -3.86 4.56 30.60 0.14 -3.72 16 25 C -0.11 -3.38 5.77 30.59 0.18 -3.20 16 26 C -0.11 -2.75 5.92 30.59 0.18 -2.57 16 27 C -0.11 -3.02 5.75 30.59 0.18 -2.84 16 28 C -0.11 -2.93 4.65 30.60 0.14 -2.78 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.09 7.67 -2.39 -0.02 1.07 16 34 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 1.46 7.18 -2.39 -0.02 1.45 16 37 H 0.07 1.54 8.00 -2.38 -0.02 1.52 16 38 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 39 H 0.12 2.42 8.07 -2.38 -0.02 2.40 16 40 H 0.41 13.38 7.27 -92.70 -0.67 12.70 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.03 1.18 7.58 -2.38 -0.02 1.16 16 43 H 0.38 17.69 6.53 -92.71 -0.61 17.09 16 44 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.03 1.35 7.16 -2.39 -0.02 1.33 16 47 H 0.04 1.64 7.61 -2.38 -0.02 1.62 16 48 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 50 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 52 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 53 H 0.06 1.66 7.11 -2.39 -0.02 1.65 16 54 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -62.97 404.03 2.79 -60.18 By element: Atomic # 1 Polarization: 43.54 SS G_CDS: -0.42 Total: 43.12 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 4.40 Total: -13.78 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -3.17 Total: -113.22 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.04 Total: -24.71 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -62.97 2.79 -60.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115550775.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.428 kcal (2) G-P(sol) polarization free energy of solvation -62.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds