Wall clock time and date at job start Tue Mar 31 2020 15:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.43253 * 2 1 4 4 C 1.54258 * 110.48828 * 237.45394 * 2 1 3 5 5 C 1.53879 * 106.59909 * 217.71292 * 4 2 1 6 6 C 1.54268 * 106.59614 * 359.97438 * 5 4 2 7 7 H 1.09001 * 110.48597 * 264.93009 * 6 5 4 8 8 C 1.53003 * 110.48716 * 142.42068 * 6 5 4 9 9 C 1.50699 * 109.47155 * 66.45424 * 8 6 5 10 10 O 1.21288 * 119.99862 * 359.97438 * 9 8 6 11 11 N 1.34778 * 120.00400 * 180.02562 * 9 8 6 12 12 C 1.46491 * 120.00313 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47261 * 176.62836 * 12 11 9 14 14 N 1.46503 * 109.47469 * 54.62772 * 13 12 11 15 15 C 1.36935 * 119.99717 * 62.83343 * 14 13 12 16 16 H 1.07997 * 120.00238 * 354.26524 * 15 14 13 17 17 C 1.38820 * 119.99647 * 174.25595 * 15 14 13 18 18 N 1.31617 * 120.00240 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99899 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46665 * 60.00643 * 19 17 15 21 21 H 1.48500 * 109.46920 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47068 * 300.00612 * 19 17 15 23 23 C 1.53003 * 109.46962 * 294.62695 * 13 12 11 24 24 C 1.52998 * 109.46962 * 179.97438 * 23 13 12 25 25 C 1.52992 * 109.47634 * 60.00192 * 24 23 13 26 26 C 1.53003 * 109.46789 * 299.99914 * 25 24 23 27 27 C 1.52996 * 109.47232 * 59.99939 * 26 25 24 28 28 C 1.54885 * 104.19760 * 23.61040 * 6 5 4 29 29 H 1.08994 * 109.47062 * 181.08834 * 1 2 3 30 30 H 1.09006 * 109.46571 * 61.09217 * 1 2 3 31 31 H 1.08992 * 109.47516 * 301.09531 * 1 2 3 32 32 H 1.09003 * 110.03642 * 336.99300 * 4 2 1 33 33 H 1.09004 * 110.03484 * 98.38184 * 4 2 1 34 34 H 1.08995 * 110.03249 * 119.28103 * 5 4 2 35 35 H 1.08995 * 110.03450 * 240.66571 * 5 4 2 36 36 H 1.09000 * 109.47539 * 186.45248 * 8 6 5 37 37 H 1.09004 * 109.47162 * 306.45529 * 8 6 5 38 38 H 0.97003 * 119.99444 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.47474 * 296.62510 * 12 11 9 40 40 H 1.08996 * 109.47242 * 56.63026 * 12 11 9 41 41 H 0.97005 * 119.99972 * 242.84430 * 14 13 12 42 42 H 0.96996 * 120.00673 * 179.97438 * 18 17 15 43 43 H 1.08994 * 109.47425 * 299.99942 * 23 13 12 44 44 H 1.09000 * 109.47178 * 60.00450 * 23 13 12 45 45 H 1.09002 * 109.47522 * 299.99540 * 24 23 13 46 46 H 1.09006 * 109.47043 * 180.02562 * 24 23 13 47 47 H 1.08999 * 109.47892 * 180.02562 * 25 24 23 48 48 H 1.09005 * 109.47310 * 59.99669 * 25 24 23 49 49 H 1.08994 * 109.47425 * 299.99733 * 26 25 24 50 50 H 1.08999 * 109.47316 * 179.97438 * 26 25 24 51 51 H 1.08999 * 109.47532 * 179.97438 * 27 26 25 52 52 H 1.09003 * 109.47254 * 59.99554 * 27 26 25 53 53 H 1.08994 * 110.76092 * 203.74237 * 28 6 5 54 54 H 1.09001 * 110.75993 * 80.37022 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0700 -0.7774 -1.2181 5 6 3.3166 -1.5396 -0.7357 6 6 3.4911 -1.1983 0.7586 7 1 4.1903 -0.3712 0.8819 8 6 3.9727 -2.4252 1.5355 9 6 5.3653 -2.7881 1.0885 10 8 5.9181 -2.1304 0.2323 11 7 5.9963 -3.8441 1.6392 12 6 7.3498 -4.1971 1.2042 13 6 7.8636 -5.3719 2.0390 14 7 6.9096 -6.4809 1.9608 15 6 6.6543 -7.0807 0.7566 16 1 7.0839 -6.6784 -0.1490 17 6 5.8434 -8.2060 0.6998 18 7 5.3196 -8.6961 1.8033 19 14 5.4956 -9.0248 -0.9428 20 1 6.7734 -9.4722 -1.5531 21 1 4.6091 -10.1976 -0.7335 22 1 4.8277 -8.0551 -1.8476 23 6 8.0172 -4.9330 3.4967 24 6 8.5304 -6.1079 4.3316 25 6 9.8870 -6.5639 3.7908 26 6 9.7334 -7.0027 2.3331 27 6 9.2203 -5.8279 1.4981 28 6 2.0726 -0.7825 1.2213 29 1 -0.3633 -1.0274 0.0195 30 1 -0.3633 0.4968 -0.8997 31 1 -0.3634 0.5307 0.8799 32 1 1.3177 -1.4805 -1.5758 33 1 2.3405 -0.0834 -2.0140 34 1 3.1693 -2.6125 -0.8592 35 1 4.1927 -1.2162 -1.2977 36 1 3.9806 -2.2000 2.6020 37 1 3.3006 -3.2622 1.3459 38 1 5.5540 -4.3703 2.3237 39 1 7.3311 -4.4802 0.1517 40 1 8.0097 -3.3401 1.3383 41 1 6.4586 -6.7902 2.7620 42 1 4.7527 -9.4822 1.7637 43 1 8.7270 -4.1080 3.5549 44 1 7.0506 -4.6087 3.8822 45 1 7.8202 -6.9327 4.2734 46 1 8.6394 -5.7954 5.3702 47 1 10.2524 -7.4012 4.3853 48 1 10.5973 -5.7391 3.8490 49 1 9.0233 -7.8275 2.2748 50 1 10.7000 -7.3272 1.9476 51 1 9.1113 -6.1403 0.4596 52 1 9.9305 -5.0030 1.5564 53 1 2.1258 -0.1394 2.0998 54 1 1.4584 -1.6606 1.4208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115677427.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:15 Heat of formation + Delta-G solvation = -86.940096 kcal Electronic energy + Delta-G solvation = -28925.678722 eV Core-core repulsion = 25280.773223 eV Total energy + Delta-G solvation = -3644.905499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.06948 -40.08388 -38.91336 -35.83437 -35.01002 -33.57985 -32.74002 -31.55691 -30.68175 -30.15306 -28.33405 -26.41718 -25.69879 -24.80777 -23.44068 -21.93259 -21.37795 -20.95466 -20.35372 -19.77023 -19.01407 -17.89251 -17.18514 -16.83622 -16.58212 -16.16739 -15.89800 -15.62732 -15.32636 -15.13988 -14.94164 -14.61453 -14.40984 -14.24569 -14.17142 -13.80102 -13.53235 -13.40295 -13.24344 -12.95364 -12.90448 -12.79464 -12.72985 -12.59573 -12.50285 -12.08536 -11.94867 -11.88226 -11.74057 -11.67648 -11.57789 -11.48545 -11.42606 -11.31330 -11.27297 -11.08660 -10.81600 -10.69964 -10.55721 -9.82100 -8.90122 -7.87536 -5.11611 1.44422 1.46274 1.50408 1.81082 2.46218 2.59319 3.45178 3.64958 3.67766 3.81096 3.82567 3.94095 4.02121 4.10511 4.14899 4.27003 4.38217 4.40963 4.47103 4.49052 4.61816 4.67446 4.70384 4.76036 4.77039 4.77681 4.78534 4.82010 4.86345 4.87952 4.93487 4.97979 5.04640 5.08045 5.16274 5.17160 5.18317 5.22031 5.23085 5.37964 5.43077 5.47301 5.49992 5.51529 5.53823 5.60216 5.61483 5.62716 5.74095 5.80989 6.35447 6.77023 7.42789 7.44561 8.17365 8.44020 9.34514 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.003558 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.409232 B = 7868.734805 C = 9315.936330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 H 0.076 0.924 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.070 4.070 7 H 0.069 0.931 8 C -0.128 4.128 9 C 0.501 3.499 10 O -0.590 6.590 11 N -0.702 5.702 12 C 0.123 3.877 13 C 0.190 3.810 14 N -0.708 5.708 15 C -0.208 4.208 16 H 0.058 0.942 17 C -0.060 4.060 18 N -0.958 5.958 19 Si 0.944 3.056 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.292 1.292 23 C -0.107 4.107 24 C -0.112 4.112 25 C -0.107 4.107 26 C -0.106 4.106 27 C -0.115 4.115 28 C -0.109 4.109 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.406 0.594 39 H 0.026 0.974 40 H 0.062 0.938 41 H 0.378 0.622 42 H 0.247 0.753 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.075 0.925 47 H 0.059 0.941 48 H 0.073 0.927 49 H 0.040 0.960 50 H 0.056 0.944 51 H 0.036 0.964 52 H 0.071 0.929 53 H 0.082 0.918 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 15.358 4.970 16.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.157 4.157 5 C -0.154 4.154 6 C -0.089 4.089 7 H 0.087 0.913 8 C -0.168 4.168 9 C 0.289 3.711 10 O -0.471 6.471 11 N -0.352 5.352 12 C -0.003 4.003 13 C 0.100 3.900 14 N -0.349 5.349 15 C -0.340 4.340 16 H 0.076 0.924 17 C -0.253 4.253 18 N -0.609 5.609 19 Si 0.776 3.224 20 H -0.213 1.213 21 H -0.223 1.223 22 H -0.219 1.219 23 C -0.144 4.144 24 C -0.150 4.150 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.155 4.155 28 C -0.147 4.147 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.135 0.865 37 H 0.113 0.887 38 H 0.242 0.758 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.211 0.789 42 H 0.056 0.944 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.092 0.908 49 H 0.059 0.941 50 H 0.074 0.926 51 H 0.055 0.945 52 H 0.089 0.911 53 H 0.100 0.900 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.946 15.736 4.196 16.402 hybrid contribution -0.462 -1.557 -1.021 1.918 sum -2.409 14.180 3.176 14.729 Atomic orbital electron populations 1.21782 0.93986 1.01910 1.02148 1.21946 0.96175 0.99062 0.94156 0.90541 1.22240 0.96506 0.98779 0.98207 1.22105 0.97667 0.99072 0.96518 1.21669 0.97381 0.95960 0.93899 0.91260 1.21777 0.91840 1.00045 1.03121 1.21291 0.88959 0.79731 0.81085 1.90620 1.69083 1.53729 1.33680 1.45843 1.17153 1.30124 1.42066 1.21657 0.83355 0.97520 0.97802 1.20008 0.89376 0.86445 0.94195 1.42451 1.48358 1.37109 1.06975 1.19126 1.22255 1.05293 0.87340 0.92384 1.25113 1.02303 0.99529 0.98338 1.69730 1.38821 1.25778 1.26608 0.85663 0.77255 0.77932 0.81573 1.21293 1.22349 1.21896 1.21650 1.01492 0.98287 0.93009 1.21437 0.96950 0.97680 0.98931 1.21447 0.97176 1.00820 0.95031 1.21299 0.99393 0.97893 0.95785 1.21788 0.96728 0.98251 0.98683 1.22626 0.93871 1.00235 0.97934 0.92841 0.92420 0.91699 0.91804 0.92036 0.94004 0.93704 0.86477 0.88672 0.75814 0.95591 0.91967 0.78851 0.94425 0.90023 0.91839 0.93795 0.90621 0.92225 0.90807 0.94074 0.92573 0.94527 0.91069 0.89982 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.11 71.98 0.66 -1.39 16 2 C -0.09 -1.67 3.46 -9.73 -0.03 -1.70 16 3 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 4 C -0.12 -2.58 6.37 31.32 0.20 -2.38 16 5 C -0.12 -3.19 5.39 31.32 0.17 -3.02 16 6 C -0.07 -1.68 2.47 -9.72 -0.02 -1.71 16 7 H 0.07 1.80 8.02 -2.39 -0.02 1.78 16 8 C -0.13 -3.19 5.10 29.85 0.15 -3.04 16 9 C 0.50 16.82 7.61 87.66 0.67 17.48 16 10 O -0.59 -23.76 14.79 -3.06 -0.05 -23.81 16 11 N -0.70 -23.63 5.09 -463.08 -2.36 -25.99 16 12 C 0.12 4.45 4.37 86.38 0.38 4.83 16 13 C 0.19 6.59 0.41 3.60 0.00 6.59 16 14 N -0.71 -30.76 3.40 -303.33 -1.03 -31.79 16 15 C -0.21 -10.63 8.70 84.04 0.73 -9.90 16 16 H 0.06 3.06 6.77 -2.91 -0.02 3.04 16 17 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 18 N -0.96 -54.81 13.07 21.65 0.28 -54.53 16 19 Si 0.94 45.93 29.55 68.60 2.03 47.96 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 22 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 23 C -0.11 -2.96 4.65 30.59 0.14 -2.82 16 24 C -0.11 -3.11 5.75 30.59 0.18 -2.94 16 25 C -0.11 -2.87 5.92 30.59 0.18 -2.69 16 26 C -0.11 -3.50 5.76 30.59 0.18 -3.33 16 27 C -0.11 -3.90 4.52 30.59 0.14 -3.76 16 28 C -0.11 -1.96 5.76 31.88 0.18 -1.77 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 1.34 7.84 -2.39 -0.02 1.32 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.04 1.27 7.78 -2.39 -0.02 1.25 16 35 H 0.04 1.44 7.60 -2.39 -0.02 1.42 16 36 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.09 2.36 8.05 -2.38 -0.02 2.34 16 38 H 0.41 13.11 7.39 -92.71 -0.69 12.42 16 39 H 0.03 1.11 7.50 -2.38 -0.02 1.09 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.38 17.62 6.63 -92.70 -0.61 17.01 16 42 H 0.25 14.07 8.31 -92.71 -0.77 13.29 16 43 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.06 1.70 7.28 -2.39 -0.02 1.68 16 45 H 0.04 1.50 6.92 -2.39 -0.02 1.48 16 46 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 47 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 49 H 0.04 1.71 7.60 -2.39 -0.02 1.69 16 50 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.04 1.42 7.23 -2.39 -0.02 1.40 16 52 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 53 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 54 H 0.07 1.28 7.97 -2.39 -0.02 1.27 16 Total: -1.00 -62.43 404.96 2.80 -59.63 By element: Atomic # 1 Polarization: 43.29 SS G_CDS: -0.44 Total: 42.85 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 4.36 Total: -14.33 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -3.11 Total: -112.30 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.81 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -62.43 2.80 -59.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115677427.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.306 kcal (2) G-P(sol) polarization free energy of solvation -62.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds