Wall clock time and date at job start Tue Mar 31 2020 15:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.02073 * 2 1 4 4 C 1.54269 * 110.07577 * 121.41716 * 2 1 3 5 5 C 1.54884 * 104.19773 * 142.91953 * 4 2 1 6 6 C 1.54893 * 102.74763 * 322.05563 * 5 4 2 7 7 H 1.08993 * 110.60294 * 279.20813 * 6 5 4 8 8 C 1.53006 * 110.48665 * 156.61795 * 6 5 4 9 9 C 1.50705 * 109.46545 * 70.22816 * 8 6 5 10 10 O 1.21283 * 120.00317 * 0.02562 * 9 8 6 11 11 N 1.34779 * 119.99876 * 179.97438 * 9 8 6 12 12 C 1.46491 * 120.00142 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47189 * 176.62676 * 12 11 9 14 14 N 1.46501 * 109.47085 * 54.62818 * 13 12 11 15 15 C 1.36930 * 120.00117 * 62.83601 * 14 13 12 16 16 H 1.08002 * 120.00158 * 354.25782 * 15 14 13 17 17 C 1.38813 * 120.00278 * 174.25600 * 15 14 13 18 18 N 1.31624 * 119.99730 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47094 * 180.02562 * 19 17 15 21 21 H 1.48500 * 109.47088 * 299.99691 * 19 17 15 22 22 H 1.48501 * 109.47221 * 60.00101 * 19 17 15 23 23 C 1.53002 * 109.47382 * 174.62432 * 13 12 11 24 24 C 1.53002 * 109.47382 * 179.97438 * 23 13 12 25 25 C 1.52997 * 109.46916 * 300.00265 * 24 23 13 26 26 C 1.53001 * 109.47318 * 60.00083 * 25 24 23 27 27 C 1.52996 * 109.47267 * 294.62834 * 13 12 11 28 28 C 1.53877 * 110.03285 * 238.60814 * 2 1 3 29 29 H 1.09005 * 109.46851 * 181.39443 * 1 2 3 30 30 H 1.09002 * 109.47147 * 301.38878 * 1 2 3 31 31 H 1.08991 * 109.47173 * 61.39342 * 1 2 3 32 32 H 1.09000 * 110.48451 * 261.59379 * 4 2 1 33 33 H 1.08993 * 110.48500 * 24.24069 * 4 2 1 34 34 H 1.08995 * 110.76108 * 203.74460 * 5 4 2 35 35 H 1.09005 * 110.75863 * 80.37080 * 5 4 2 36 36 H 1.08995 * 109.47630 * 310.22983 * 8 6 5 37 37 H 1.08997 * 109.47074 * 190.22316 * 8 6 5 38 38 H 0.97007 * 119.99843 * 0.02562 * 11 9 8 39 39 H 1.08996 * 109.47735 * 56.62795 * 12 11 9 40 40 H 1.09001 * 109.47110 * 296.62424 * 12 11 9 41 41 H 0.96999 * 119.99995 * 242.83665 * 14 13 12 42 42 H 0.97009 * 119.99972 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.47042 * 300.00488 * 23 13 12 44 44 H 1.09003 * 109.46534 * 59.99853 * 23 13 12 45 45 H 1.09000 * 109.46815 * 180.02562 * 24 23 13 46 46 H 1.09002 * 109.46706 * 60.00125 * 24 23 13 47 47 H 1.08995 * 109.47296 * 299.99902 * 25 24 23 48 48 H 1.08999 * 109.47009 * 180.02562 * 25 24 23 49 49 H 1.08998 * 109.47138 * 180.02562 * 26 25 24 50 50 H 1.08995 * 109.47085 * 59.99690 * 26 25 24 51 51 H 1.09002 * 109.47032 * 299.99524 * 27 13 12 52 52 H 1.08996 * 109.47068 * 59.99453 * 27 13 12 53 53 H 1.09004 * 110.03078 * 121.37901 * 28 2 1 54 54 H 1.08999 * 110.07410 * 359.97149 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0595 -0.7553 1.2365 5 6 3.3150 -1.4995 0.7182 6 6 2.8885 -1.9396 -0.7043 7 1 2.2796 -2.8425 -0.6601 8 6 4.1183 -2.1674 -1.5857 9 6 4.8460 -3.4033 -1.1227 10 8 4.4225 -4.0394 -0.1809 11 7 5.9670 -3.8022 -1.7558 12 6 6.6741 -5.0037 -1.3062 13 6 7.8552 -5.2795 -2.2388 14 7 8.7044 -4.0883 -2.3166 15 6 9.3344 -3.6220 -1.1938 16 1 9.1331 -4.0748 -0.2342 17 6 10.2318 -2.5672 -1.2888 18 7 10.4768 -2.0149 -2.4582 19 14 11.0916 -1.9315 0.2428 20 1 11.9920 -0.8093 -0.1248 21 1 10.0781 -1.4534 1.2171 22 1 11.8880 -3.0260 0.8537 23 6 8.6719 -6.4532 -1.6944 24 6 9.8526 -6.7294 -2.6274 25 6 9.3297 -7.0757 -4.0229 26 6 8.5132 -5.9019 -4.5674 27 6 7.3329 -5.6255 -3.6346 28 6 2.0571 -0.7530 -1.2341 29 1 -0.3633 -1.0274 0.0250 30 1 -0.3633 0.5353 0.8773 31 1 -0.3633 0.4920 -0.9021 32 1 2.3307 -0.0533 2.0251 33 1 1.3160 -1.4664 1.5965 34 1 3.5348 -2.3666 1.3410 35 1 4.1719 -0.8272 0.6739 36 1 4.7823 -1.3061 -1.5128 37 1 3.8041 -2.2974 -2.6213 38 1 6.3055 -3.2936 -2.5093 39 1 5.9923 -5.8540 -1.3222 40 1 7.0407 -4.8511 -0.2911 41 1 8.8205 -3.6299 -3.1636 42 1 11.1042 -1.2780 -2.5247 43 1 9.0439 -6.2067 -0.7000 44 1 8.0399 -7.3395 -1.6364 45 1 10.4341 -7.5659 -2.2396 46 1 10.4845 -5.8431 -2.6857 47 1 8.6978 -7.9618 -3.9645 48 1 10.1709 -7.2729 -4.6874 49 1 8.1403 -6.1489 -5.5614 50 1 9.1451 -5.0158 -4.6257 51 1 6.7011 -6.5119 -3.5767 52 1 6.7512 -4.7894 -4.0225 53 1 2.6860 -0.0943 -1.8330 54 1 1.2234 -1.1192 -1.8332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115677428.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:19 Heat of formation + Delta-G solvation = -86.872083 kcal Electronic energy + Delta-G solvation = -28914.020496 eV Core-core repulsion = 25269.117946 eV Total energy + Delta-G solvation = -3644.902550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.06410 -40.08521 -38.94576 -35.83476 -35.00881 -33.56563 -32.73236 -31.55837 -30.68345 -30.15959 -28.27355 -26.39907 -25.69838 -24.84874 -23.43981 -21.96046 -21.48384 -20.92806 -20.23124 -19.79797 -19.02659 -18.06187 -17.04876 -16.68564 -16.42377 -16.18740 -15.88356 -15.82050 -15.52567 -15.14200 -14.88957 -14.44517 -14.35353 -14.23434 -14.20158 -13.82506 -13.54377 -13.40159 -13.25401 -13.09343 -12.90731 -12.79774 -12.64610 -12.59380 -12.49181 -12.08412 -11.94052 -11.88057 -11.67551 -11.63191 -11.60471 -11.54403 -11.47014 -11.31198 -11.19942 -11.08773 -10.82153 -10.69868 -10.56383 -9.81907 -8.90011 -7.87449 -5.11520 1.44697 1.46531 1.50659 1.81212 2.46436 2.59528 3.45310 3.66178 3.69012 3.82405 3.82783 3.94182 4.01749 4.09709 4.15001 4.25598 4.37038 4.40807 4.49043 4.58262 4.60969 4.64368 4.67811 4.73880 4.76484 4.77679 4.80837 4.82128 4.84406 4.91069 4.94759 4.98095 5.07169 5.08253 5.11965 5.18323 5.18745 5.22117 5.24045 5.36296 5.40311 5.47467 5.50017 5.51606 5.56530 5.60482 5.61820 5.62557 5.74242 5.81013 6.35595 6.77169 7.42923 7.44680 8.17502 8.44113 9.34638 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.003512 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.649623 B = 7970.615681 C = 9410.197872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.074 0.926 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.070 4.070 7 H 0.067 0.933 8 C -0.129 4.129 9 C 0.502 3.498 10 O -0.590 6.590 11 N -0.702 5.702 12 C 0.123 3.877 13 C 0.190 3.810 14 N -0.708 5.708 15 C -0.207 4.207 16 H 0.058 0.942 17 C -0.061 4.061 18 N -0.959 5.959 19 Si 0.944 3.056 20 H -0.297 1.297 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.115 4.115 24 C -0.106 4.106 25 C -0.107 4.107 26 C -0.112 4.112 27 C -0.107 4.107 28 C -0.112 4.112 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.406 0.594 39 H 0.062 0.938 40 H 0.026 0.974 41 H 0.378 0.622 42 H 0.247 0.753 43 H 0.036 0.964 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.040 0.960 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.075 0.925 50 H 0.043 0.957 51 H 0.081 0.919 52 H 0.063 0.937 53 H 0.073 0.927 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.050 -2.012 -3.318 16.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.159 4.159 6 C -0.089 4.089 7 H 0.085 0.915 8 C -0.168 4.168 9 C 0.290 3.710 10 O -0.471 6.471 11 N -0.352 5.352 12 C -0.003 4.003 13 C 0.100 3.900 14 N -0.349 5.349 15 C -0.340 4.340 16 H 0.076 0.924 17 C -0.253 4.253 18 N -0.610 5.610 19 Si 0.776 3.224 20 H -0.224 1.224 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.155 4.155 24 C -0.144 4.144 25 C -0.145 4.145 26 C -0.150 4.150 27 C -0.144 4.144 28 C -0.150 4.150 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.134 0.866 38 H 0.242 0.758 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.211 0.789 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.092 0.908 48 H 0.078 0.922 49 H 0.094 0.906 50 H 0.062 0.938 51 H 0.100 0.900 52 H 0.082 0.918 53 H 0.091 0.909 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.258 -2.446 -2.505 16.631 hybrid contribution 1.459 0.927 0.764 1.890 sum -14.799 -1.519 -1.740 14.978 Atomic orbital electron populations 1.21860 0.94096 1.01793 1.02094 1.21746 0.96387 0.99245 0.94139 0.90777 1.22432 0.96572 0.98743 0.97732 1.22515 0.97821 0.98945 0.96658 1.21661 0.94600 0.98646 0.93956 0.91462 1.21786 0.97551 0.95041 1.02442 1.21281 0.80716 0.86819 0.82192 1.90615 1.68326 1.58224 1.29981 1.45846 1.25601 1.28618 1.35117 1.21659 0.94087 0.86878 0.97716 1.20007 0.88643 0.87398 0.93975 1.42448 1.54857 1.29075 1.08502 1.19128 1.15755 1.10608 0.88486 0.92356 1.25118 1.01515 1.00802 0.97902 1.69740 1.40195 1.27821 1.23235 0.85658 0.78485 0.77514 0.80746 1.22366 1.21837 1.21306 1.21790 0.97534 0.97725 0.98406 1.21300 0.97368 0.99984 0.95721 1.21447 0.99432 0.98094 0.95508 1.21429 0.96737 0.98333 0.98501 1.21640 0.97717 1.01709 0.93375 1.22298 0.99306 0.95840 0.97510 0.92861 0.92441 0.91830 0.91642 0.91690 0.93556 0.92729 0.88580 0.86589 0.75814 0.91975 0.95553 0.78858 0.94429 0.94503 0.91067 0.92565 0.94074 0.90816 0.92226 0.90625 0.93791 0.90039 0.91844 0.90852 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.85 71.98 0.64 -1.40 16 2 C -0.10 -1.70 3.50 -10.07 -0.04 -1.74 16 3 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.12 -2.48 6.36 31.67 0.20 -2.28 16 5 C -0.12 -3.28 5.75 31.88 0.18 -3.10 16 6 C -0.07 -1.67 2.45 -9.72 -0.02 -1.70 16 7 H 0.07 1.79 7.90 -2.39 -0.02 1.77 16 8 C -0.13 -3.20 5.05 29.85 0.15 -3.04 16 9 C 0.50 16.81 7.64 87.66 0.67 17.48 16 10 O -0.59 -23.75 14.73 -3.04 -0.04 -23.80 16 11 N -0.70 -23.59 5.09 -463.07 -2.36 -25.95 16 12 C 0.12 4.44 4.37 86.38 0.38 4.82 16 13 C 0.19 6.58 0.41 3.60 0.00 6.59 16 14 N -0.71 -30.72 3.40 -303.34 -1.03 -31.75 16 15 C -0.21 -10.60 8.70 84.03 0.73 -9.87 16 16 H 0.06 3.07 6.77 -2.91 -0.02 3.05 16 17 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 18 N -0.96 -54.85 13.07 21.65 0.28 -54.57 16 19 Si 0.94 45.89 29.55 68.60 2.03 47.92 16 20 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 21 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 23 C -0.11 -3.89 4.52 30.60 0.14 -3.76 16 24 C -0.11 -3.50 5.77 30.59 0.18 -3.32 16 25 C -0.11 -2.87 5.92 30.59 0.18 -2.69 16 26 C -0.11 -3.11 5.75 30.58 0.18 -2.94 16 27 C -0.11 -2.96 4.64 30.58 0.14 -2.82 16 28 C -0.11 -2.02 6.03 31.32 0.19 -1.84 16 29 H 0.05 0.79 8.12 -2.38 -0.02 0.77 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.36 7.84 -2.39 -0.02 1.34 16 34 H 0.05 1.51 7.29 -2.39 -0.02 1.49 16 35 H 0.05 1.53 7.97 -2.38 -0.02 1.51 16 36 H 0.10 2.37 8.02 -2.39 -0.02 2.35 16 37 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.41 13.09 7.39 -92.70 -0.69 12.41 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.03 1.12 7.50 -2.39 -0.02 1.11 16 41 H 0.38 17.61 6.63 -92.71 -0.61 17.00 16 42 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 43 H 0.04 1.42 7.23 -2.39 -0.02 1.41 16 44 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.04 1.70 7.60 -2.39 -0.02 1.69 16 47 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.04 1.50 6.92 -2.39 -0.02 1.48 16 51 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 52 H 0.06 1.70 7.28 -2.39 -0.02 1.68 16 53 H 0.07 1.22 7.84 -2.38 -0.02 1.21 16 54 H 0.08 1.21 7.67 -2.39 -0.02 1.19 16 Total: -1.00 -62.25 404.37 2.80 -59.45 By element: Atomic # 1 Polarization: 43.59 SS G_CDS: -0.44 Total: 43.15 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 4.36 Total: -14.44 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -3.11 Total: -112.27 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.04 Total: -23.80 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -62.25 2.80 -59.45 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115677428.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.424 kcal (2) G-P(sol) polarization free energy of solvation -62.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds