Wall clock time and date at job start Tue Mar 31 2020 15:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.01938 * 2 1 4 4 C 1.54271 * 110.02779 * 238.60757 * 2 1 3 5 5 C 1.54892 * 104.19177 * 217.05717 * 4 2 1 6 6 C 1.54882 * 102.75254 * 37.94491 * 5 4 2 7 7 H 1.09003 * 110.48689 * 80.86419 * 6 5 4 8 8 C 1.53001 * 110.48785 * 203.37945 * 6 5 4 9 9 C 1.50698 * 109.46820 * 293.54360 * 8 6 5 10 10 O 1.21284 * 120.00438 * 359.97438 * 9 8 6 11 11 N 1.34775 * 119.99890 * 180.02562 * 9 8 6 12 12 C 1.46505 * 120.00207 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47150 * 177.71220 * 12 11 9 14 14 N 1.46504 * 109.47183 * 54.61997 * 13 12 11 15 15 C 1.36937 * 119.99940 * 59.72967 * 14 13 12 16 16 H 1.07999 * 120.00074 * 5.85254 * 15 14 13 17 17 C 1.38813 * 120.00110 * 185.85858 * 15 14 13 18 18 N 1.31621 * 119.99815 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00115 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47252 * 59.99753 * 19 17 15 21 21 H 1.48499 * 109.47228 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47174 * 299.99864 * 19 17 15 23 23 C 1.53002 * 109.46967 * 174.61678 * 13 12 11 24 24 C 1.53001 * 109.46967 * 179.97438 * 23 13 12 25 25 C 1.52995 * 109.47257 * 300.00219 * 24 23 13 26 26 C 1.53002 * 109.47311 * 59.99992 * 25 24 23 27 27 C 1.52995 * 109.47257 * 294.61896 * 13 12 11 28 28 C 1.53876 * 110.07425 * 121.42099 * 2 1 3 29 29 H 1.08995 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46686 * 299.93842 * 1 2 3 31 31 H 1.08999 * 109.47205 * 59.93337 * 1 2 3 32 32 H 1.08998 * 110.48280 * 98.38599 * 4 2 1 33 33 H 1.08994 * 110.59961 * 335.78863 * 4 2 1 34 34 H 1.09004 * 110.75369 * 279.62701 * 5 4 2 35 35 H 1.09002 * 110.91322 * 156.33682 * 5 4 2 36 36 H 1.09007 * 109.46976 * 173.54596 * 8 6 5 37 37 H 1.08992 * 109.47041 * 53.54805 * 8 6 5 38 38 H 0.97002 * 119.99973 * 0.02562 * 11 9 8 39 39 H 1.08992 * 109.46769 * 57.71277 * 12 11 9 40 40 H 1.09002 * 109.46611 * 297.71153 * 12 11 9 41 41 H 0.96994 * 120.00351 * 239.73397 * 14 13 12 42 42 H 0.96999 * 120.00196 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.46893 * 59.99918 * 23 13 12 44 44 H 1.09001 * 109.47199 * 300.00233 * 23 13 12 45 45 H 1.08997 * 109.46932 * 179.97438 * 24 23 13 46 46 H 1.09003 * 109.46719 * 60.00570 * 24 23 13 47 47 H 1.09002 * 109.47324 * 180.02562 * 25 24 23 48 48 H 1.09002 * 109.47425 * 300.00385 * 25 24 23 49 49 H 1.09003 * 109.46936 * 59.99483 * 26 25 24 50 50 H 1.09001 * 109.47199 * 179.97438 * 26 25 24 51 51 H 1.09005 * 109.47109 * 59.99743 * 27 13 12 52 52 H 1.09002 * 109.47425 * 300.00385 * 27 13 12 53 53 H 1.09007 * 110.02887 * 0.02562 * 28 2 1 54 54 H 1.08995 * 110.02811 * 238.59200 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0584 -0.7550 -1.2373 5 6 3.3143 -1.4995 -0.7201 6 6 2.8891 -1.9399 0.7026 7 1 2.2813 -2.8436 0.6565 8 6 4.1196 -2.1681 1.5827 9 6 4.8974 -3.3492 1.0622 10 8 4.5059 -3.9497 0.0839 11 7 6.0276 -3.7389 1.6844 12 6 6.7842 -4.8868 1.1781 13 6 8.0442 -5.0805 2.0241 14 7 7.6715 -5.1945 3.4363 15 6 6.8355 -6.1992 3.8449 16 1 6.5266 -6.9624 3.1459 17 6 6.3851 -6.2368 5.1573 18 7 6.7619 -5.3069 6.0093 19 14 5.2454 -7.6077 5.7148 20 1 5.9193 -8.9179 5.5292 21 1 4.9114 -7.4211 7.1497 22 1 3.9987 -7.5737 4.9085 23 6 8.7641 -6.3561 1.5821 24 6 10.0245 -6.5495 2.4276 25 6 10.9536 -5.3484 2.2402 26 6 10.2337 -4.0728 2.6822 27 6 8.9735 -3.8796 1.8373 28 6 2.0582 -0.7535 1.2333 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5129 0.8906 31 1 -0.3633 0.5149 -0.8894 32 1 2.3289 -0.0528 -2.0258 33 1 1.3155 -1.4658 -1.5989 34 1 4.1712 -0.8272 -0.6764 35 1 3.5367 -2.3663 -1.3425 36 1 3.8024 -2.3648 2.6069 37 1 4.7508 -1.2797 1.5622 38 1 6.3402 -3.2594 2.4675 39 1 7.0670 -4.7066 0.1410 40 1 6.1664 -5.7830 1.2358 41 1 8.0168 -4.5583 4.0820 42 1 6.4474 -5.3333 6.9265 43 1 9.0414 -6.2713 0.5313 44 1 8.1020 -7.2117 1.7152 45 1 10.5371 -7.4585 2.1131 46 1 9.7475 -6.6341 3.4785 47 1 11.8517 -5.4864 2.8423 48 1 11.2305 -5.2637 1.1894 49 1 9.9567 -4.1575 3.7331 50 1 10.8958 -3.2172 2.5491 51 1 8.4605 -2.9707 2.1521 52 1 9.2508 -3.7946 0.7865 53 1 1.2244 -1.1199 1.8323 54 1 2.6876 -0.0949 1.8319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115677429.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:23 Heat of formation + Delta-G solvation = -86.579801 kcal Electronic energy + Delta-G solvation = -28930.397639 eV Core-core repulsion = 25285.507763 eV Total energy + Delta-G solvation = -3644.889875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.06476 -40.08924 -38.92526 -35.84250 -34.99249 -33.55953 -32.73011 -31.56239 -30.66793 -30.14872 -28.27966 -26.40678 -25.69079 -24.83838 -23.44162 -21.96580 -21.47456 -20.90568 -20.23250 -19.79884 -19.03068 -18.03370 -17.01760 -16.73494 -16.43997 -16.18132 -15.91571 -15.66735 -15.58885 -15.12565 -14.94037 -14.47387 -14.33490 -14.24619 -14.11583 -13.84778 -13.53570 -13.39091 -13.25017 -13.12867 -12.91985 -12.80239 -12.61660 -12.59466 -12.48986 -12.08247 -11.94845 -11.91458 -11.68607 -11.63346 -11.59704 -11.52854 -11.43658 -11.21964 -11.20060 -11.14097 -10.82511 -10.70485 -10.54782 -9.80210 -8.90033 -7.87538 -5.11480 1.44377 1.46471 1.50407 1.81712 2.47516 2.59464 3.45482 3.67252 3.70552 3.81315 3.83685 3.93426 4.03195 4.11119 4.15101 4.24283 4.37703 4.41096 4.48780 4.58718 4.60816 4.63867 4.66978 4.73808 4.76440 4.77547 4.81544 4.82242 4.83991 4.91787 4.95284 4.98881 5.07765 5.08320 5.14064 5.18403 5.18739 5.22026 5.27117 5.35755 5.42194 5.47379 5.48711 5.51435 5.56421 5.59238 5.62435 5.63899 5.75796 5.79316 6.35543 6.77979 7.43630 7.44892 8.17506 8.44130 9.34524 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011933 B = 0.003533 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.817762 B = 7923.879289 C = 9442.579532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.082 0.918 4 C -0.118 4.118 5 C -0.114 4.114 6 C -0.073 4.073 7 H 0.052 0.948 8 C -0.128 4.128 9 C 0.502 3.498 10 O -0.589 6.589 11 N -0.701 5.701 12 C 0.125 3.875 13 C 0.191 3.809 14 N -0.708 5.708 15 C -0.208 4.208 16 H 0.059 0.941 17 C -0.060 4.060 18 N -0.958 5.958 19 Si 0.944 3.056 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.293 1.293 23 C -0.117 4.117 24 C -0.106 4.106 25 C -0.108 4.108 26 C -0.113 4.113 27 C -0.107 4.107 28 C -0.114 4.114 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.405 0.595 39 H 0.062 0.938 40 H 0.026 0.974 41 H 0.378 0.622 42 H 0.247 0.753 43 H 0.071 0.929 44 H 0.036 0.964 45 H 0.057 0.943 46 H 0.041 0.959 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.044 0.956 50 H 0.076 0.924 51 H 0.061 0.939 52 H 0.081 0.919 53 H 0.064 0.936 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 12.048 -11.638 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.100 0.900 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.093 4.093 7 H 0.071 0.929 8 C -0.167 4.167 9 C 0.290 3.710 10 O -0.471 6.471 11 N -0.350 5.350 12 C -0.002 4.002 13 C 0.100 3.900 14 N -0.349 5.349 15 C -0.340 4.340 16 H 0.077 0.923 17 C -0.253 4.253 18 N -0.609 5.609 19 Si 0.776 3.224 20 H -0.213 1.213 21 H -0.223 1.223 22 H -0.220 1.220 23 C -0.157 4.157 24 C -0.144 4.144 25 C -0.145 4.145 26 C -0.150 4.150 27 C -0.145 4.145 28 C -0.152 4.152 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.133 0.867 38 H 0.241 0.759 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.212 0.788 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.062 0.938 50 H 0.094 0.906 51 H 0.080 0.920 52 H 0.100 0.900 53 H 0.083 0.917 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.284 11.481 -12.301 16.875 hybrid contribution -0.664 -1.120 1.396 1.909 sum -1.948 10.361 -10.905 15.167 Atomic orbital electron populations 1.21880 0.94640 1.01480 1.02101 1.21737 0.95998 0.99499 0.93987 0.89991 1.22438 0.96694 0.98756 0.97646 1.22479 0.97957 0.99152 0.95558 1.21662 0.94525 0.98157 0.94912 0.92913 1.21766 0.97389 0.96500 1.01088 1.21243 0.80729 0.86036 0.83004 1.90607 1.69395 1.58292 1.28810 1.45837 1.25201 1.32108 1.31886 1.21640 0.93875 0.87753 0.96920 1.20016 0.90873 0.94882 0.84235 1.42457 1.55605 1.33865 1.03000 1.19140 1.18550 1.02747 0.93590 0.92348 1.25107 1.02751 1.00273 0.97190 1.69730 1.50589 1.36435 1.04178 0.85661 0.79677 0.80491 0.76580 1.21253 1.22322 1.22015 1.21821 0.96969 0.97792 0.99094 1.21308 0.95288 0.98022 0.99768 1.21453 0.97412 0.94088 1.01553 1.21436 0.96325 0.98074 0.99191 1.21642 0.95530 0.96405 1.00901 1.22307 0.99156 0.95976 0.97756 0.93473 0.92130 0.92049 0.90816 0.92351 0.91387 0.93179 0.88800 0.86714 0.75857 0.92023 0.95558 0.78831 0.94418 0.91038 0.94527 0.92382 0.93987 0.92022 0.90837 0.93753 0.90588 0.92014 0.90037 0.91729 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.84 71.98 0.64 -1.58 16 2 C -0.09 -1.60 3.50 -10.07 -0.04 -1.64 16 3 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.12 -2.30 6.36 31.67 0.20 -2.09 16 5 C -0.11 -2.77 5.63 31.88 0.18 -2.59 16 6 C -0.07 -1.86 2.48 -9.72 -0.02 -1.88 16 7 H 0.05 1.61 8.02 -2.39 -0.02 1.59 16 8 C -0.13 -3.35 5.06 29.85 0.15 -3.20 16 9 C 0.50 17.40 7.61 87.66 0.67 18.06 16 10 O -0.59 -24.24 14.50 -3.04 -0.04 -24.29 16 11 N -0.70 -24.32 5.10 -463.06 -2.36 -26.69 16 12 C 0.12 4.56 4.31 86.38 0.37 4.93 16 13 C 0.19 6.59 0.40 3.60 0.00 6.59 16 14 N -0.71 -30.76 3.46 -303.34 -1.05 -31.81 16 15 C -0.21 -10.64 8.72 84.03 0.73 -9.91 16 16 H 0.06 3.08 6.75 -2.91 -0.02 3.06 16 17 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 18 N -0.96 -54.63 13.07 21.65 0.28 -54.35 16 19 Si 0.94 45.98 29.55 68.60 2.03 48.01 16 20 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 21 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 22 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 23 C -0.12 -3.90 4.57 30.60 0.14 -3.76 16 24 C -0.11 -3.37 5.77 30.59 0.18 -3.20 16 25 C -0.11 -2.77 5.92 30.59 0.18 -2.59 16 26 C -0.11 -3.05 5.75 30.58 0.18 -2.87 16 27 C -0.11 -2.97 4.65 30.58 0.14 -2.82 16 28 C -0.11 -2.23 6.03 31.32 0.19 -2.04 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.20 7.86 -2.39 -0.02 1.18 16 34 H 0.07 1.52 8.02 -2.38 -0.02 1.50 16 35 H 0.05 1.50 7.05 -2.39 -0.02 1.48 16 36 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 37 H 0.11 2.39 8.10 -2.39 -0.02 2.37 16 38 H 0.41 13.68 7.37 -92.71 -0.68 13.00 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 41 H 0.38 17.64 6.52 -92.71 -0.60 17.04 16 42 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 43 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.04 1.39 7.18 -2.39 -0.02 1.37 16 45 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.04 1.66 7.60 -2.39 -0.02 1.64 16 47 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.04 1.47 6.86 -2.39 -0.02 1.45 16 50 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.06 1.68 7.26 -2.38 -0.02 1.67 16 52 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 53 H 0.06 1.26 7.67 -2.38 -0.02 1.24 16 54 H 0.08 1.32 7.84 -2.39 -0.02 1.31 16 Total: -1.00 -61.96 403.94 2.78 -59.17 By element: Atomic # 1 Polarization: 43.79 SS G_CDS: -0.43 Total: 43.37 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 4.35 Total: -13.41 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -3.13 Total: -112.85 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.04 Total: -24.29 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -61.96 2.78 -59.17 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115677429.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.405 kcal (2) G-P(sol) polarization free energy of solvation -61.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds