Wall clock time and date at job start Tue Mar 31 2020 15:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46972 * 2 1 4 4 C 1.52999 * 109.46953 * 240.00122 * 2 1 3 5 5 C 1.52998 * 109.47120 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46993 * 60.00073 * 5 4 2 7 7 C 1.52999 * 109.47128 * 299.99922 * 6 5 4 8 8 C 1.52998 * 109.47120 * 60.00155 * 7 6 5 9 9 H 1.08999 * 109.47396 * 179.97438 * 8 7 6 10 10 C 1.50709 * 109.47115 * 59.99896 * 8 7 6 11 11 O 1.21283 * 119.99963 * 240.00105 * 10 8 7 12 12 N 1.34769 * 119.99786 * 60.00306 * 10 8 7 13 13 C 1.46505 * 119.99865 * 180.02562 * 12 10 8 14 14 C 1.53004 * 109.47002 * 184.89407 * 13 12 10 15 15 N 1.46503 * 109.47103 * 54.64734 * 14 13 12 16 16 C 1.36938 * 120.00114 * 64.66683 * 15 14 13 17 17 H 1.07996 * 120.00211 * 354.90041 * 16 15 14 18 18 C 1.38809 * 119.99869 * 174.89106 * 16 15 14 19 19 N 1.31620 * 120.00188 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00119 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47030 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47060 * 120.00361 * 20 18 16 23 23 H 1.48498 * 109.47044 * 240.00255 * 20 18 16 24 24 C 1.53000 * 109.46788 * 174.64248 * 14 13 12 25 25 C 1.53004 * 109.46788 * 179.97438 * 24 14 13 26 26 C 1.52994 * 109.47168 * 300.00188 * 25 24 14 27 27 C 1.53000 * 109.47420 * 60.00198 * 26 25 24 28 28 C 1.52994 * 109.47168 * 294.64436 * 14 13 12 29 29 H 1.09000 * 109.46708 * 299.99740 * 1 2 3 30 30 H 1.09001 * 109.46666 * 59.99973 * 1 2 3 31 31 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47480 * 59.99954 * 4 2 1 33 33 H 1.09001 * 109.47160 * 300.00238 * 4 2 1 34 34 H 1.09001 * 109.47310 * 300.00160 * 5 4 2 35 35 H 1.08998 * 109.47372 * 179.97438 * 5 4 2 36 36 H 1.09003 * 109.47144 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.47409 * 60.00174 * 6 5 4 38 38 H 1.09001 * 109.47160 * 299.99903 * 7 6 5 39 39 H 1.09004 * 109.46967 * 180.02562 * 7 6 5 40 40 H 0.97001 * 120.00418 * 359.97438 * 12 10 8 41 41 H 1.08993 * 109.47102 * 64.89175 * 13 12 10 42 42 H 1.08999 * 109.46609 * 304.89294 * 13 12 10 43 43 H 0.97004 * 119.99715 * 244.67427 * 15 14 13 44 44 H 0.97005 * 120.00484 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.47278 * 60.00148 * 24 14 13 46 46 H 1.08996 * 109.47363 * 299.99954 * 24 14 13 47 47 H 1.09003 * 109.46919 * 180.02562 * 25 24 14 48 48 H 1.08997 * 109.46837 * 60.00517 * 25 24 14 49 49 H 1.09008 * 109.47109 * 180.02562 * 26 25 24 50 50 H 1.08999 * 109.46988 * 299.99907 * 26 25 24 51 51 H 1.08997 * 109.47009 * 59.99412 * 27 26 25 52 52 H 1.08996 * 109.47363 * 180.02562 * 27 26 25 53 53 H 1.09003 * 109.47351 * 60.00081 * 28 14 13 54 54 H 1.08997 * 109.47510 * 299.99916 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 6 3.5706 -0.7204 1.2488 8 6 2.0406 -0.7209 1.2492 9 1 1.6772 -0.2075 2.1394 10 6 1.5387 -2.1420 1.2495 11 8 0.8414 -2.5390 0.3400 12 7 1.8648 -2.9715 2.2603 13 6 1.3774 -4.3531 2.2603 14 6 1.7848 -5.0377 3.5666 15 7 1.3101 -4.2438 4.7027 16 6 -0.0337 -4.0840 4.9125 17 1 -0.7421 -4.4729 4.1960 18 6 -0.4853 -3.4224 6.0461 19 7 0.3780 -2.9481 6.9191 20 14 -2.3184 -3.2051 6.3327 21 1 -3.0713 -3.8246 5.2127 22 1 -2.7011 -3.8613 7.6087 23 1 -2.6399 -1.7571 6.4048 24 6 1.1636 -6.4346 3.6256 25 6 1.5716 -7.1194 4.9316 26 6 3.0959 -7.2361 4.9918 27 6 3.7171 -5.8391 4.9328 28 6 3.3091 -5.1543 3.6274 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6767 -0.2074 -2.1393 33 1 1.6766 -1.7489 -1.2493 34 1 3.9330 0.3071 -1.2498 35 1 3.9333 -1.2349 -2.1394 36 1 5.1705 -1.4416 -0.0009 37 1 3.7176 -2.4694 -0.0002 38 1 3.9336 0.3074 1.2487 39 1 3.9347 -1.2338 2.1388 40 1 2.4228 -2.6541 2.9875 41 1 1.8109 -4.8913 1.4175 42 1 0.2910 -4.3551 2.1726 43 1 1.9476 -3.8312 5.3062 44 1 0.0624 -2.4861 7.7115 45 1 1.5168 -7.0253 2.7804 46 1 0.0777 -6.3515 3.5823 47 1 1.1294 -8.1148 4.9735 48 1 1.2187 -6.5288 5.7771 49 1 3.3865 -7.7243 5.9221 50 1 3.4487 -7.8266 4.1463 51 1 3.3642 -5.2486 5.7782 52 1 4.8030 -5.9223 4.9752 53 1 3.7517 -4.1591 3.5854 54 1 3.6624 -5.7450 2.7822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115699566.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:16 Heat of formation + Delta-G solvation = -80.090651 kcal Electronic energy + Delta-G solvation = -30220.751359 eV Core-core repulsion = 26576.142874 eV Total energy + Delta-G solvation = -3644.608485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.63537 -40.23648 -38.04450 -35.85365 -35.10069 -33.38567 -32.94637 -31.80298 -31.52556 -30.14411 -27.63197 -26.50411 -25.70548 -24.16489 -23.39149 -22.28193 -22.01445 -21.50734 -20.37613 -19.72609 -18.99550 -17.45643 -16.94895 -16.80061 -16.45839 -15.95203 -15.92786 -15.55589 -15.23248 -15.15940 -14.87049 -14.83331 -14.42727 -14.28882 -14.13714 -13.66795 -13.40367 -13.38446 -13.18494 -12.98027 -12.91903 -12.86672 -12.83327 -12.58010 -12.51361 -12.36849 -12.24347 -12.03085 -11.87912 -11.78036 -11.67182 -11.52280 -11.31203 -11.07953 -10.96386 -10.89869 -10.76142 -10.67024 -10.17910 -9.73032 -8.88666 -7.87693 -5.10854 1.41660 1.45894 1.51361 1.86657 2.48598 2.59359 3.45631 3.69089 3.80602 3.82898 3.86356 3.94326 4.03643 4.14150 4.20056 4.27205 4.34005 4.42533 4.49540 4.52092 4.58402 4.63005 4.67863 4.73589 4.77320 4.79201 4.82790 4.84538 4.92140 4.94381 4.97754 5.03281 5.08440 5.10053 5.16556 5.18704 5.22458 5.28485 5.34753 5.38130 5.46378 5.48533 5.50743 5.51882 5.53264 5.60648 5.61941 5.69710 5.81763 5.87752 6.35737 6.80965 7.44584 7.50432 8.18216 8.44030 9.34986 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011286 B = 0.004844 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.430677 B = 5779.033020 C = 7301.051396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.062 4.062 3 H 0.090 0.910 4 C -0.126 4.126 5 C -0.113 4.113 6 C -0.118 4.118 7 C -0.104 4.104 8 C -0.105 4.105 9 H 0.090 0.910 10 C 0.514 3.486 11 O -0.575 6.575 12 N -0.699 5.699 13 C 0.125 3.875 14 C 0.189 3.811 15 N -0.706 5.706 16 C -0.200 4.200 17 H 0.058 0.942 18 C -0.063 4.063 19 N -0.959 5.959 20 Si 0.942 3.058 21 H -0.280 1.280 22 H -0.297 1.297 23 H -0.300 1.300 24 C -0.113 4.113 25 C -0.106 4.106 26 C -0.107 4.107 27 C -0.112 4.112 28 C -0.106 4.106 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.039 0.961 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.402 0.598 41 H 0.061 0.939 42 H 0.027 0.973 43 H 0.377 0.623 44 H 0.246 0.754 45 H 0.071 0.929 46 H 0.035 0.965 47 H 0.055 0.945 48 H 0.040 0.960 49 H 0.058 0.942 50 H 0.073 0.927 51 H 0.042 0.958 52 H 0.075 0.925 53 H 0.062 0.938 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.791 1.078 -12.357 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.081 4.081 3 H 0.108 0.892 4 C -0.163 4.163 5 C -0.151 4.151 6 C -0.156 4.156 7 C -0.142 4.142 8 C -0.126 4.126 9 H 0.108 0.892 10 C 0.302 3.698 11 O -0.456 6.456 12 N -0.349 5.349 13 C -0.002 4.002 14 C 0.098 3.902 15 N -0.347 5.347 16 C -0.333 4.333 17 H 0.076 0.924 18 C -0.256 4.256 19 N -0.611 5.611 20 Si 0.775 3.225 21 H -0.205 1.205 22 H -0.225 1.225 23 H -0.228 1.228 24 C -0.153 4.153 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.150 4.150 28 C -0.144 4.144 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.238 0.762 41 H 0.079 0.921 42 H 0.045 0.955 43 H 0.210 0.790 44 H 0.055 0.945 45 H 0.090 0.910 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.059 0.941 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.061 0.939 52 H 0.094 0.906 53 H 0.081 0.919 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.114 0.747 -13.000 17.119 hybrid contribution -1.504 0.447 1.265 2.016 sum 9.610 1.194 -11.735 15.215 Atomic orbital electron populations 1.22042 0.96309 1.02405 1.00948 1.20869 0.94935 0.99009 0.93303 0.89189 1.21777 0.96078 1.01752 0.96699 1.21514 0.94832 1.01181 0.97551 1.21536 1.01020 0.98426 0.94614 1.21529 0.91104 1.02878 0.98696 1.21454 0.98566 0.91780 1.00817 0.89171 1.20968 0.79330 0.88331 0.81174 1.90509 1.39770 1.78029 1.37297 1.45792 1.52526 1.12118 1.24455 1.21659 0.97440 0.82424 0.98643 1.20033 0.93834 0.90292 0.86009 1.42429 1.03214 1.59285 1.29758 1.19185 0.85053 1.27110 1.01956 0.92383 1.25098 0.99288 1.03279 0.97901 1.69746 1.32869 1.45284 1.13229 0.85523 0.83375 0.76579 0.77043 1.20520 1.22504 1.22816 1.21764 0.99387 0.96207 0.97910 1.21300 0.96620 0.98796 0.97659 1.21443 0.94434 0.96848 1.01716 1.21424 1.00047 0.96224 0.97280 1.21636 0.93152 1.00891 0.98679 0.93847 0.92116 0.92741 0.92081 0.91882 0.90628 0.91898 0.90083 0.94180 0.88904 0.91222 0.76173 0.92135 0.95453 0.78959 0.94508 0.91019 0.94601 0.92608 0.94090 0.92310 0.90788 0.93871 0.90635 0.91905 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.53 8.90 71.98 0.64 -3.89 16 2 C -0.06 -1.53 2.46 -10.79 -0.03 -1.56 16 3 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 4 C -0.13 -3.03 4.93 30.59 0.15 -2.88 16 5 C -0.11 -2.16 5.92 30.59 0.18 -1.98 16 6 C -0.12 -2.34 5.70 30.59 0.17 -2.17 16 7 C -0.10 -2.09 5.35 30.59 0.16 -1.93 16 8 C -0.10 -2.75 2.55 -11.54 -0.03 -2.78 16 9 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 10 C 0.51 17.12 5.35 87.66 0.47 17.59 16 11 O -0.57 -22.39 11.35 -3.04 -0.03 -22.42 16 12 N -0.70 -23.22 5.03 -463.05 -2.33 -25.55 16 13 C 0.13 4.43 4.40 86.38 0.38 4.81 16 14 C 0.19 6.47 0.40 3.60 0.00 6.47 16 15 N -0.71 -30.63 3.50 -303.35 -1.06 -31.69 16 16 C -0.20 -10.30 8.66 84.03 0.73 -9.57 16 17 H 0.06 3.09 6.77 -2.91 -0.02 3.07 16 18 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 19 N -0.96 -55.34 13.06 21.65 0.28 -55.06 16 20 Si 0.94 46.37 29.55 68.60 2.03 48.40 16 21 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 23 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 24 C -0.11 -3.80 4.49 30.60 0.14 -3.66 16 25 C -0.11 -3.48 5.77 30.59 0.18 -3.30 16 26 C -0.11 -2.83 5.92 30.59 0.18 -2.65 16 27 C -0.11 -3.07 5.75 30.58 0.18 -2.90 16 28 C -0.11 -2.88 4.63 30.58 0.14 -2.74 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.91 5.51 -2.39 -0.01 1.90 16 32 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.06 1.95 5.51 -2.39 -0.01 1.94 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.04 0.98 7.22 -2.39 -0.02 0.96 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.37 7.57 -2.38 -0.02 1.35 16 40 H 0.40 12.81 6.68 -92.71 -0.62 12.19 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.03 1.16 7.62 -2.39 -0.02 1.15 16 43 H 0.38 17.64 6.70 -92.71 -0.62 17.02 16 44 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.04 1.38 7.12 -2.39 -0.02 1.37 16 47 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.04 1.69 7.54 -2.39 -0.02 1.68 16 49 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 50 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.04 1.47 6.96 -2.39 -0.02 1.45 16 52 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 53 H 0.06 1.65 7.10 -2.39 -0.02 1.63 16 54 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -61.71 391.39 2.63 -59.08 By element: Atomic # 1 Polarization: 43.75 SS G_CDS: -0.37 Total: 43.38 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 4.11 Total: -16.14 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -3.11 Total: -112.30 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.03 Total: -22.42 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -61.71 2.63 -59.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115699566.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.009 kcal (2) G-P(sol) polarization free energy of solvation -61.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds