Wall clock time and date at job start Tue Mar 31 2020 15:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47523 * 2 1 4 4 C 1.53006 * 109.47216 * 240.00312 * 2 1 3 5 5 C 1.52997 * 109.47549 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47083 * 59.99799 * 5 4 2 7 7 C 1.53001 * 109.46882 * 300.00232 * 6 5 4 8 8 C 1.52994 * 109.47359 * 120.00689 * 2 1 3 9 9 H 1.08996 * 109.47366 * 59.99215 * 8 2 1 10 10 C 1.50708 * 109.46834 * 299.99762 * 8 2 1 11 11 O 1.21283 * 119.99848 * 359.97438 * 10 8 2 12 12 N 1.34777 * 119.99946 * 180.27664 * 10 8 2 13 13 C 1.46501 * 119.99935 * 179.72462 * 12 10 8 14 14 C 1.53000 * 109.47132 * 175.97742 * 13 12 10 15 15 N 1.46500 * 109.47027 * 305.24978 * 14 13 12 16 16 C 1.36940 * 119.99603 * 300.07622 * 15 14 13 17 17 H 1.07996 * 120.00293 * 354.07220 * 16 15 14 18 18 C 1.38818 * 119.99526 * 174.07531 * 16 15 14 19 19 N 1.31620 * 119.99994 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 119.99731 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47323 * 90.00204 * 20 18 16 22 22 H 1.48505 * 109.47223 * 209.99887 * 20 18 16 23 23 H 1.48494 * 109.47389 * 329.99857 * 20 18 16 24 24 C 1.53000 * 109.46954 * 185.24676 * 14 13 12 25 25 C 1.53000 * 109.46954 * 179.97438 * 24 14 13 26 26 C 1.52998 * 109.47229 * 60.00039 * 25 24 14 27 27 C 1.52998 * 109.47328 * 300.00370 * 26 25 24 28 28 C 1.53000 * 109.47268 * 59.99654 * 27 26 25 29 29 H 1.08999 * 109.46973 * 299.99813 * 1 2 3 30 30 H 1.09007 * 109.46800 * 59.99607 * 1 2 3 31 31 H 1.08990 * 109.47395 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46932 * 300.00270 * 4 2 1 33 33 H 1.09000 * 109.46999 * 59.99959 * 4 2 1 34 34 H 1.08999 * 109.47306 * 179.97438 * 5 4 2 35 35 H 1.09004 * 109.47076 * 300.00000 * 5 4 2 36 36 H 1.09004 * 109.47001 * 60.00155 * 6 5 4 37 37 H 1.08995 * 109.46912 * 180.02562 * 6 5 4 38 38 H 1.08998 * 109.47653 * 299.99680 * 7 6 5 39 39 H 1.09000 * 109.46789 * 180.02562 * 7 6 5 40 40 H 0.96998 * 119.99897 * 359.72095 * 12 10 8 41 41 H 1.09000 * 109.46997 * 295.98137 * 13 12 10 42 42 H 1.08999 * 109.47243 * 55.97556 * 13 12 10 43 43 H 0.96996 * 119.99737 * 120.08341 * 15 14 13 44 44 H 0.96998 * 119.99621 * 180.02562 * 19 18 16 45 45 H 1.08996 * 109.47579 * 299.99875 * 24 14 13 46 46 H 1.09006 * 109.46930 * 60.00313 * 24 14 13 47 47 H 1.09002 * 109.47194 * 299.99976 * 25 24 14 48 48 H 1.09006 * 109.47071 * 180.02562 * 25 24 14 49 49 H 1.08996 * 109.47299 * 179.97438 * 26 25 24 50 50 H 1.09002 * 109.47084 * 59.99870 * 26 25 24 51 51 H 1.09002 * 109.46629 * 299.99779 * 27 26 25 52 52 H 1.08993 * 109.47396 * 180.02562 * 27 26 25 53 53 H 1.08999 * 109.47170 * 180.02562 * 28 27 26 54 54 H 1.08996 * 109.46876 * 60.00141 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2491 6 6 4.0795 -1.4435 0.0001 7 6 3.5695 -0.7222 1.2494 8 6 2.0400 -0.7214 1.2491 9 1 1.6766 -1.7490 1.2491 10 6 1.5377 -0.0110 2.4797 11 8 0.8408 0.9754 2.3684 12 7 1.8679 -0.4683 3.7037 13 6 1.3846 0.2258 4.8999 14 6 1.8149 -0.5483 6.1475 15 7 1.3540 -1.9351 6.0449 16 6 0.0163 -2.2053 5.9312 17 1 -0.7050 -1.4058 6.0132 18 6 -0.4124 -3.5071 5.7105 19 7 0.4667 -4.4816 5.6111 20 14 -2.2370 -3.8757 5.5547 21 1 -2.6448 -3.7640 4.1311 22 1 -2.5071 -5.2528 6.0403 23 1 -3.0097 -2.9034 6.3687 24 6 1.2010 0.1027 7.3886 25 6 1.6307 -0.6718 8.6361 26 6 3.1563 -0.6491 8.7502 27 6 3.7702 -1.3000 7.5091 28 6 3.3405 -0.5255 6.2616 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6766 -1.7489 -1.2494 33 1 1.6767 -0.2073 -2.1393 34 1 3.9333 -1.2360 -2.1389 35 1 3.9337 0.3058 -1.2488 36 1 3.7158 -2.4710 -0.0001 37 1 5.1695 -1.4435 0.0005 38 1 3.9332 0.3053 1.2497 39 1 3.9329 -1.2361 2.1393 40 1 2.4255 -1.2570 3.7926 41 1 1.8061 1.2305 4.9323 42 1 0.2969 0.2891 4.8687 43 1 1.9963 -2.6618 6.0575 44 1 0.1671 -5.3911 5.4565 45 1 1.5439 1.1345 7.4650 46 1 0.1140 0.0861 7.3075 47 1 1.2874 -1.7035 8.5595 48 1 1.1930 -0.2083 9.5203 49 1 3.4624 -1.2005 9.6392 50 1 3.4996 0.3826 8.8268 51 1 3.4269 -2.3317 7.4325 52 1 4.8570 -1.2843 7.5905 53 1 3.7775 -0.9895 5.3774 54 1 3.6838 0.5061 6.3382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115699568.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:24 Heat of formation + Delta-G solvation = -86.326054 kcal Electronic energy + Delta-G solvation = -29861.061524 eV Core-core repulsion = 26216.182652 eV Total energy + Delta-G solvation = -3644.878872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.40180 -40.19875 -38.50609 -35.89244 -35.08002 -33.37269 -32.95569 -31.87731 -31.54175 -30.16934 -27.70271 -26.46535 -25.69403 -24.25241 -23.41647 -22.34158 -21.72354 -21.23256 -20.56629 -19.78948 -19.02668 -18.10481 -16.98907 -16.64474 -16.19835 -16.03560 -15.68822 -15.52227 -15.37996 -15.17223 -15.06900 -14.90902 -14.69280 -14.36543 -14.05030 -13.59316 -13.42537 -13.38677 -13.20782 -13.11747 -12.92370 -12.83840 -12.70928 -12.59249 -12.49139 -12.39004 -12.10664 -12.05403 -11.91894 -11.78353 -11.69000 -11.49387 -11.34819 -11.22042 -11.13914 -10.97101 -10.77209 -10.68885 -10.32269 -9.79274 -8.89599 -7.88391 -5.11657 1.41505 1.45060 1.49502 1.78623 2.44794 2.58134 3.44859 3.65837 3.74192 3.80685 3.83348 3.92687 4.03933 4.13950 4.19123 4.25421 4.36718 4.41290 4.46734 4.48463 4.51487 4.58064 4.61874 4.67239 4.76576 4.77616 4.78940 4.81828 4.92075 4.92505 4.97022 5.02354 5.07103 5.08873 5.18364 5.19392 5.22209 5.23918 5.32053 5.36029 5.39452 5.46392 5.48739 5.50660 5.52720 5.59221 5.59713 5.64455 5.77575 5.79771 6.35064 6.75604 7.42421 7.44202 8.17378 8.43528 9.34007 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010720 B = 0.004619 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.268616 B = 6060.533658 C = 7365.807629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.062 4.062 3 H 0.065 0.935 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.103 4.103 8 C -0.098 4.098 9 H 0.087 0.913 10 C 0.507 3.493 11 O -0.585 6.585 12 N -0.696 5.696 13 C 0.124 3.876 14 C 0.189 3.811 15 N -0.707 5.707 16 C -0.203 4.203 17 H 0.058 0.942 18 C -0.062 4.062 19 N -0.958 5.958 20 Si 0.942 3.058 21 H -0.300 1.300 22 H -0.297 1.297 23 H -0.280 1.280 24 C -0.115 4.115 25 C -0.106 4.106 26 C -0.107 4.107 27 C -0.112 4.112 28 C -0.107 4.107 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.404 0.596 41 H 0.062 0.938 42 H 0.028 0.972 43 H 0.377 0.623 44 H 0.246 0.754 45 H 0.072 0.928 46 H 0.035 0.965 47 H 0.041 0.959 48 H 0.057 0.943 49 H 0.061 0.939 50 H 0.073 0.927 51 H 0.043 0.957 52 H 0.076 0.924 53 H 0.061 0.939 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.654 8.520 -6.832 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.081 4.081 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.154 4.154 6 C -0.153 4.153 7 C -0.141 4.141 8 C -0.119 4.119 9 H 0.105 0.895 10 C 0.295 3.705 11 O -0.467 6.467 12 N -0.345 5.345 13 C -0.003 4.003 14 C 0.099 3.901 15 N -0.348 5.348 16 C -0.336 4.336 17 H 0.076 0.924 18 C -0.255 4.255 19 N -0.610 5.610 20 Si 0.774 3.226 21 H -0.228 1.228 22 H -0.224 1.224 23 H -0.205 1.205 24 C -0.155 4.155 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.150 4.150 28 C -0.145 4.145 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.240 0.760 41 H 0.081 0.919 42 H 0.046 0.954 43 H 0.211 0.789 44 H 0.055 0.945 45 H 0.090 0.910 46 H 0.054 0.946 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.092 0.908 51 H 0.062 0.938 52 H 0.094 0.906 53 H 0.079 0.921 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.984 9.224 -6.887 15.911 hybrid contribution -1.509 -1.256 0.166 1.970 sum 9.475 7.968 -6.721 14.087 Atomic orbital electron populations 1.22015 0.96161 1.00970 1.02346 1.20828 0.95047 0.99037 0.93193 0.91605 1.21613 0.96426 1.00402 0.96435 1.21549 0.94606 1.01118 0.98146 1.21532 1.01174 0.99160 0.93394 1.21484 0.91108 1.01737 0.99802 1.21386 0.98492 1.00011 0.92043 0.89524 1.21135 0.79484 0.84269 0.85602 1.90556 1.40002 1.28812 1.87282 1.45785 1.52301 1.31375 1.05054 1.21680 0.97594 0.95046 0.85969 1.20043 0.93918 0.84902 0.91286 1.42445 1.03773 1.01606 1.86970 1.19157 0.85235 0.91849 1.37311 0.92391 1.25099 0.99251 0.96436 1.04700 1.69735 1.32710 0.99451 1.59078 0.85609 0.83357 0.76668 0.76975 1.22798 1.22400 1.20529 1.21804 0.99353 0.98813 0.95556 1.21310 0.96608 0.99980 0.96489 1.21449 0.94394 1.01115 0.97521 1.21437 1.00147 0.98954 0.94450 1.21658 0.93054 1.01446 0.98325 0.92919 0.91842 0.93961 0.92114 0.90786 0.90404 0.91653 0.91935 0.90050 0.91451 0.91240 0.76004 0.91945 0.95365 0.78880 0.94479 0.90953 0.94649 0.94022 0.92406 0.92064 0.90787 0.93814 0.90554 0.92056 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.72 8.87 71.98 0.64 -4.08 16 2 C -0.06 -1.63 1.89 -10.79 -0.02 -1.65 16 3 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 4 C -0.11 -2.22 5.20 30.60 0.16 -2.06 16 5 C -0.12 -1.92 5.92 30.59 0.18 -1.74 16 6 C -0.12 -2.03 5.92 30.59 0.18 -1.85 16 7 C -0.10 -2.27 5.10 30.58 0.16 -2.11 16 8 C -0.10 -2.77 2.06 -11.56 -0.02 -2.79 16 9 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 10 C 0.51 18.08 6.86 87.66 0.60 18.69 16 11 O -0.58 -24.41 13.66 -3.04 -0.04 -24.45 16 12 N -0.70 -24.36 5.02 -463.05 -2.33 -26.68 16 13 C 0.12 4.50 4.32 86.38 0.37 4.88 16 14 C 0.19 6.52 0.40 3.60 0.00 6.52 16 15 N -0.71 -30.82 3.55 -303.34 -1.08 -31.89 16 16 C -0.20 -10.46 8.72 84.03 0.73 -9.73 16 17 H 0.06 3.09 6.75 -2.91 -0.02 3.07 16 18 C -0.06 -3.42 5.50 84.86 0.47 -2.96 16 19 N -0.96 -55.16 13.07 21.65 0.28 -54.88 16 20 Si 0.94 46.51 29.55 68.60 2.03 48.53 16 21 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 22 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 23 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 24 C -0.12 -3.83 4.56 30.59 0.14 -3.69 16 25 C -0.11 -3.36 5.76 30.59 0.18 -3.19 16 26 C -0.11 -2.74 5.92 30.59 0.18 -2.56 16 27 C -0.11 -3.01 5.75 30.59 0.18 -2.83 16 28 C -0.11 -2.93 4.66 30.60 0.14 -2.79 16 29 H 0.05 1.94 5.51 -2.39 -0.01 1.93 16 30 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.24 8.14 -2.38 -0.02 1.23 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.50 7.55 -2.39 -0.02 1.48 16 40 H 0.40 13.65 6.68 -92.71 -0.62 13.03 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.03 1.23 7.58 -2.39 -0.02 1.21 16 43 H 0.38 17.72 6.53 -92.71 -0.61 17.12 16 44 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.03 1.35 7.17 -2.38 -0.02 1.33 16 47 H 0.04 1.64 7.60 -2.39 -0.02 1.63 16 48 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 49 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 52 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 53 H 0.06 1.65 7.11 -2.39 -0.02 1.63 16 54 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -62.28 397.77 2.77 -59.51 By element: Atomic # 1 Polarization: 44.14 SS G_CDS: -0.36 Total: 43.78 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 4.26 Total: -13.93 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -3.12 Total: -113.45 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.04 Total: -24.45 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -62.28 2.77 -59.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115699568.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.813 kcal (2) G-P(sol) polarization free energy of solvation -62.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds