Wall clock time and date at job start Tue Mar 31 2020 15:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47239 * 2 1 4 4 C 1.53001 * 109.47241 * 239.99629 * 2 1 3 5 5 C 1.52999 * 109.47241 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46862 * 60.00176 * 5 4 2 7 7 C 1.52990 * 109.47159 * 299.99576 * 6 5 4 8 8 H 1.08998 * 109.47753 * 300.00432 * 7 6 5 9 9 C 1.50703 * 109.47306 * 179.97438 * 7 6 5 10 10 O 1.21279 * 120.00466 * 240.00905 * 9 7 6 11 11 N 1.34783 * 119.99493 * 60.00156 * 9 7 6 12 12 C 1.46501 * 119.99764 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.47004 * 175.77791 * 12 11 9 14 14 N 1.46498 * 109.46973 * 305.25055 * 13 12 11 15 15 C 1.36941 * 119.99629 * 301.11192 * 14 13 12 16 16 H 1.07998 * 120.00085 * 353.41667 * 15 14 13 17 17 C 1.38818 * 119.99637 * 173.41037 * 15 14 13 18 18 N 1.31616 * 119.99667 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00318 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46681 * 89.99887 * 19 17 15 21 21 H 1.48497 * 109.47317 * 210.00072 * 19 17 15 22 22 H 1.48502 * 109.47195 * 330.00550 * 19 17 15 23 23 C 1.52995 * 109.47055 * 185.24746 * 13 12 11 24 24 C 1.53002 * 109.47055 * 179.97438 * 23 13 12 25 25 C 1.52998 * 109.47151 * 59.99857 * 24 23 13 26 26 C 1.52995 * 109.47258 * 300.00019 * 25 24 23 27 27 C 1.52998 * 109.47151 * 65.24603 * 13 12 11 28 28 C 1.52999 * 109.47198 * 119.99633 * 2 1 3 29 29 H 1.09007 * 109.46828 * 300.00341 * 1 2 3 30 30 H 1.09003 * 109.47015 * 60.00060 * 1 2 3 31 31 H 1.08992 * 109.47258 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46883 * 300.00472 * 4 2 1 33 33 H 1.09003 * 109.46863 * 60.00217 * 4 2 1 34 34 H 1.08998 * 109.46772 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.46660 * 299.99975 * 5 4 2 36 36 H 1.09004 * 109.46311 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.47141 * 60.00383 * 6 5 4 38 38 H 0.96995 * 119.99770 * 0.02562 * 11 9 7 39 39 H 1.09006 * 109.46887 * 295.77212 * 12 11 9 40 40 H 1.08994 * 109.47234 * 55.77765 * 12 11 9 41 41 H 0.96999 * 120.00788 * 121.11845 * 14 13 12 42 42 H 0.96994 * 120.00421 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.47234 * 299.99898 * 23 13 12 44 44 H 1.08998 * 109.47266 * 59.99676 * 23 13 12 45 45 H 1.08996 * 109.46922 * 300.00237 * 24 23 13 46 46 H 1.09001 * 109.47295 * 179.97438 * 24 23 13 47 47 H 1.09002 * 109.47425 * 180.02562 * 25 24 23 48 48 H 1.09005 * 109.47018 * 60.00175 * 25 24 23 49 49 H 1.08996 * 109.47449 * 300.00008 * 26 25 24 50 50 H 1.09004 * 109.47216 * 179.97438 * 26 25 24 51 51 H 1.09002 * 109.47409 * 299.99839 * 27 13 12 52 52 H 1.09001 * 109.47202 * 59.99704 * 27 13 12 53 53 H 1.09006 * 109.46726 * 60.00053 * 28 2 1 54 54 H 1.08999 * 109.47455 * 300.00362 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0794 -1.4435 0.0004 7 6 3.5695 -0.7222 1.2495 8 1 3.9332 0.3054 1.2498 9 6 4.0707 -1.4333 2.4801 10 8 3.2820 -1.8939 3.2779 11 7 5.3957 -1.5574 2.6939 12 6 5.8830 -2.2492 3.8898 13 6 7.4093 -2.3428 3.8384 14 7 7.8175 -2.9783 2.5832 15 6 7.3795 -4.2400 2.2804 16 1 6.8221 -4.8078 3.0107 17 6 7.6519 -4.7889 1.0348 18 7 7.2304 -6.0013 0.7437 19 14 8.6164 -3.8070 -0.2280 20 1 10.0668 -4.0815 -0.0657 21 1 8.1878 -4.2012 -1.5941 22 1 8.3615 -2.3578 -0.0280 23 6 7.9090 -3.1779 5.0190 24 6 9.4353 -3.2720 4.9673 25 6 10.0359 -1.8671 5.0458 26 6 9.5362 -1.0320 3.8652 27 6 8.0094 -0.9377 3.9173 28 6 2.0400 -0.7212 1.2493 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6766 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.9333 -1.2354 -2.1390 35 1 3.9336 0.3057 -1.2487 36 1 5.1695 -1.4442 0.0003 37 1 3.7157 -2.4710 0.0002 38 1 6.0265 -1.1888 2.0559 39 1 5.5828 -1.6938 4.7784 40 1 5.4585 -3.2524 3.9276 41 1 8.3982 -2.5056 1.9665 42 1 7.4210 -6.3851 -0.1265 43 1 7.6052 -2.7050 5.9530 44 1 7.4814 -4.1789 4.9628 45 1 9.7386 -3.7451 4.0334 46 1 9.7913 -3.8666 5.8086 47 1 11.1232 -1.9341 5.0085 48 1 9.7325 -1.3939 5.9798 49 1 9.8395 -1.5051 2.9313 50 1 9.9637 -0.0309 3.9215 51 1 7.6534 -0.3427 3.0762 52 1 7.7056 -0.4647 4.8512 53 1 1.6766 -1.7489 1.2493 54 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115699865.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:27 Heat of formation + Delta-G solvation = -89.652851 kcal Electronic energy + Delta-G solvation = -29747.771818 eV Core-core repulsion = 26102.748685 eV Total energy + Delta-G solvation = -3645.023133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.34055 -40.25174 -38.74857 -35.93976 -35.10147 -33.76100 -32.94470 -31.95128 -31.60478 -30.71280 -27.39744 -26.81233 -25.40186 -24.31339 -23.40953 -22.61056 -21.78622 -21.03838 -20.61468 -19.78411 -19.68420 -18.01495 -17.05434 -16.54815 -16.36367 -16.16544 -16.03577 -15.52725 -15.33034 -15.08746 -15.01673 -14.87865 -14.70039 -14.31764 -14.17999 -13.92963 -13.65305 -13.41567 -13.33140 -13.28681 -12.95268 -12.86101 -12.72297 -12.65428 -12.39253 -12.35779 -12.12376 -12.09997 -11.94370 -11.87569 -11.69372 -11.43449 -11.36252 -11.26583 -11.20518 -10.99377 -10.84905 -10.73921 -10.54315 -9.89283 -9.23902 -7.93374 -5.26531 1.36627 1.41446 1.49023 1.71902 2.40067 2.53157 3.37596 3.53778 3.66994 3.70761 3.75675 3.86708 3.95160 4.05392 4.15755 4.17605 4.28107 4.35977 4.38561 4.43627 4.50720 4.55152 4.61391 4.64444 4.71459 4.73174 4.76405 4.80008 4.85095 4.89877 4.93814 5.00548 5.04737 5.08758 5.13842 5.16183 5.20736 5.21395 5.28593 5.32822 5.38477 5.41541 5.42048 5.42702 5.48343 5.56116 5.60511 5.66191 5.72453 5.89112 6.29674 6.69088 7.17101 7.36648 7.90136 8.11456 9.29018 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012597 B = 0.004403 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.293485 B = 6358.370521 C = 7499.638349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 H 0.089 0.911 4 C -0.115 4.115 5 C -0.111 4.111 6 C -0.110 4.110 7 C -0.094 4.094 8 H 0.125 0.875 9 C 0.505 3.495 10 O -0.596 6.596 11 N -0.696 5.696 12 C 0.124 3.876 13 C 0.195 3.805 14 N -0.729 5.729 15 C -0.196 4.196 16 H 0.045 0.955 17 C -0.064 4.064 18 N -0.990 5.990 19 Si 0.943 3.057 20 H -0.286 1.286 21 H -0.308 1.308 22 H -0.237 1.237 23 C -0.116 4.116 24 C -0.108 4.108 25 C -0.109 4.109 26 C -0.115 4.115 27 C -0.111 4.111 28 C -0.089 4.089 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.035 0.965 38 H 0.405 0.595 39 H 0.067 0.933 40 H 0.021 0.979 41 H 0.367 0.633 42 H 0.251 0.749 43 H 0.074 0.926 44 H 0.027 0.973 45 H 0.042 0.958 46 H 0.056 0.944 47 H 0.065 0.935 48 H 0.075 0.925 49 H 0.046 0.954 50 H 0.084 0.916 51 H 0.069 0.931 52 H 0.088 0.912 53 H 0.038 0.962 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.451 19.956 0.593 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.107 0.893 4 C -0.153 4.153 5 C -0.149 4.149 6 C -0.148 4.148 7 C -0.115 4.115 8 H 0.142 0.858 9 C 0.293 3.707 10 O -0.478 6.478 11 N -0.345 5.345 12 C -0.002 4.002 13 C 0.105 3.895 14 N -0.372 5.372 15 C -0.327 4.327 16 H 0.063 0.937 17 C -0.254 4.254 18 N -0.642 5.642 19 Si 0.771 3.229 20 H -0.213 1.213 21 H -0.235 1.235 22 H -0.160 1.160 23 C -0.156 4.156 24 C -0.146 4.146 25 C -0.146 4.146 26 C -0.153 4.153 27 C -0.149 4.149 28 C -0.127 4.127 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.242 0.758 39 H 0.085 0.915 40 H 0.039 0.961 41 H 0.201 0.799 42 H 0.060 0.940 43 H 0.093 0.907 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.065 0.935 50 H 0.102 0.898 51 H 0.088 0.912 52 H 0.107 0.893 53 H 0.057 0.943 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.093 19.458 1.189 19.738 hybrid contribution 0.687 -1.056 -1.070 1.653 sum -2.406 18.402 0.119 18.559 Atomic orbital electron populations 1.21807 0.94510 1.01544 1.02410 1.21132 0.96053 0.99886 0.93202 0.89250 1.21636 0.95074 1.00298 0.98255 1.21514 0.96025 1.01387 0.95953 1.21493 1.00424 0.98515 0.94371 1.21322 0.97909 1.01125 0.91110 0.85751 1.21314 0.82236 0.79460 0.87740 1.90621 1.56456 1.51338 1.49385 1.45716 1.06630 1.56795 1.25408 1.21642 0.96407 0.95053 0.87092 1.20009 0.89762 0.93264 0.86422 1.42677 1.58615 1.15264 1.20680 1.18685 1.26207 0.90948 0.96886 0.93703 1.25380 1.02989 0.97495 0.99563 1.69903 1.53784 1.17789 1.22739 0.85592 0.78376 0.80447 0.78484 1.21310 1.23539 1.16049 1.21788 0.96789 0.99061 0.97935 1.21333 0.94575 0.97908 1.00752 1.21476 0.99851 0.94438 0.98847 1.21511 0.94833 1.00510 0.98429 1.21750 0.96079 0.93855 1.03244 1.21344 0.92253 1.00341 0.98727 0.92393 0.91077 0.93780 0.93593 0.89890 0.91700 0.89477 0.91880 0.94626 0.75822 0.91525 0.96060 0.79867 0.93979 0.90715 0.95399 0.93893 0.92542 0.91654 0.90674 0.93499 0.89772 0.91231 0.89315 0.94290 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.19 71.98 0.66 -1.82 16 2 C -0.08 -1.59 2.72 -10.79 -0.03 -1.62 16 3 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 4 C -0.12 -2.23 5.20 30.59 0.16 -2.07 16 5 C -0.11 -2.31 5.92 30.59 0.18 -2.13 16 6 C -0.11 -3.08 5.10 30.59 0.16 -2.92 16 7 C -0.09 -2.51 2.53 -11.56 -0.03 -2.54 16 8 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 9 C 0.50 18.06 7.15 87.66 0.63 18.69 16 10 O -0.60 -26.31 15.98 -3.03 -0.05 -26.36 16 11 N -0.70 -23.62 5.03 -463.04 -2.33 -25.95 16 12 C 0.12 4.55 4.30 86.38 0.37 4.93 16 13 C 0.20 6.48 0.40 3.60 0.00 6.48 16 14 N -0.73 -29.70 3.36 -303.35 -1.02 -30.72 16 15 C -0.20 -10.46 9.20 84.03 0.77 -9.68 16 16 H 0.04 2.78 6.99 -2.91 -0.02 2.76 16 17 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 18 N -0.99 -63.55 13.97 21.65 0.30 -63.24 16 19 Si 0.94 43.37 27.67 68.60 1.90 45.27 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 21 H -0.31 -14.88 7.11 99.48 0.71 -14.18 16 22 H -0.24 -9.16 6.62 99.48 0.66 -8.50 16 23 C -0.12 -3.86 4.58 30.59 0.14 -3.72 16 24 C -0.11 -3.29 5.77 30.59 0.18 -3.12 16 25 C -0.11 -2.48 5.92 30.59 0.18 -2.30 16 26 C -0.12 -2.60 5.75 30.61 0.18 -2.43 16 27 C -0.11 -2.68 4.66 30.61 0.14 -2.53 16 28 C -0.09 -2.31 3.77 30.58 0.12 -2.20 16 29 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.06 1.83 7.57 -2.38 -0.02 1.81 16 37 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.41 12.28 6.69 -92.71 -0.62 11.66 16 39 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.02 0.98 7.54 -2.39 -0.02 0.96 16 41 H 0.37 14.24 4.43 -92.71 -0.41 13.83 16 42 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 44 H 0.03 1.13 7.21 -2.39 -0.02 1.11 16 45 H 0.04 1.60 7.60 -2.39 -0.02 1.58 16 46 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 48 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 49 H 0.05 1.24 6.84 -2.39 -0.02 1.23 16 50 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.07 1.54 7.11 -2.39 -0.02 1.52 16 52 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 53 H 0.04 1.24 8.10 -2.38 -0.02 1.22 16 54 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 Total: -1.00 -72.40 399.41 2.85 -69.55 By element: Atomic # 1 Polarization: 43.85 SS G_CDS: -0.22 Total: 43.63 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 4.27 Total: -12.17 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -3.05 Total: -119.92 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.05 Total: -26.36 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.90 Total: 45.27 kcal Total: -72.40 2.85 -69.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115699865.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.105 kcal (2) G-P(sol) polarization free energy of solvation -72.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds