Wall clock time and date at job start Tue Mar 31 2020 15:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46885 * 2 1 4 4 C 1.52998 * 109.47182 * 120.00055 * 2 1 3 5 5 C 1.52995 * 109.47285 * 180.02562 * 4 2 1 6 6 C 1.53007 * 109.47102 * 299.99563 * 5 4 2 7 7 C 1.53010 * 109.46559 * 60.00283 * 6 5 4 8 8 H 1.09000 * 109.46729 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47090 * 59.99926 * 7 6 5 10 10 O 1.21276 * 119.99818 * 239.99707 * 9 7 6 11 11 N 1.34773 * 119.99830 * 60.00231 * 9 7 6 12 12 C 1.46503 * 119.99754 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47194 * 176.12028 * 12 11 9 14 14 N 1.46503 * 109.47349 * 54.67461 * 13 12 11 15 15 C 1.36942 * 119.99334 * 63.25391 * 14 13 12 16 16 H 1.07997 * 120.00392 * 353.58565 * 15 14 13 17 17 C 1.38811 * 119.99687 * 173.59434 * 15 14 13 18 18 N 1.31612 * 120.00094 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99942 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47139 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47336 * 300.00398 * 19 17 15 22 22 H 1.48504 * 109.46967 * 59.99768 * 19 17 15 23 23 C 1.52997 * 109.47087 * 174.68006 * 13 12 11 24 24 C 1.53004 * 109.46987 * 179.97438 * 23 13 12 25 25 C 1.53002 * 109.47412 * 300.00348 * 24 23 13 26 26 C 1.52997 * 109.47329 * 59.99861 * 25 24 23 27 27 C 1.53002 * 109.47085 * 294.68216 * 13 12 11 28 28 C 1.52995 * 109.47166 * 239.99954 * 2 1 3 29 29 H 1.08997 * 109.46885 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46782 * 300.00433 * 1 2 3 31 31 H 1.09000 * 109.46734 * 59.99990 * 1 2 3 32 32 H 1.09003 * 109.46967 * 300.00227 * 4 2 1 33 33 H 1.08998 * 109.47211 * 59.99621 * 4 2 1 34 34 H 1.08998 * 109.47423 * 59.99606 * 5 4 2 35 35 H 1.09000 * 109.47326 * 180.02562 * 5 4 2 36 36 H 1.08997 * 109.47315 * 300.00751 * 6 5 4 37 37 H 1.08995 * 109.47037 * 179.97438 * 6 5 4 38 38 H 0.97003 * 120.00200 * 359.97438 * 11 9 7 39 39 H 1.08998 * 109.47432 * 56.11909 * 12 11 9 40 40 H 1.08998 * 109.46813 * 296.11972 * 12 11 9 41 41 H 0.96991 * 120.00212 * 243.25370 * 14 13 12 42 42 H 0.97005 * 120.00307 * 359.97438 * 18 17 15 43 43 H 1.08995 * 109.47415 * 299.99341 * 23 13 12 44 44 H 1.08996 * 109.47231 * 60.00142 * 23 13 12 45 45 H 1.09001 * 109.47347 * 179.97438 * 24 23 13 46 46 H 1.09009 * 109.46856 * 59.99848 * 24 23 13 47 47 H 1.09001 * 109.46808 * 299.99242 * 25 24 23 48 48 H 1.09002 * 109.47078 * 179.97438 * 25 24 23 49 49 H 1.08995 * 109.47415 * 180.02562 * 26 25 24 50 50 H 1.08996 * 109.47231 * 59.99918 * 26 25 24 51 51 H 1.09004 * 109.46925 * 300.00086 * 27 13 12 52 52 H 1.09001 * 109.47514 * 59.99384 * 27 13 12 53 53 H 1.09000 * 109.46838 * 60.00024 * 28 2 1 54 54 H 1.08997 * 109.47127 * 300.00593 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2496 6 6 4.0806 -1.4417 0.0003 7 6 3.5705 -0.7203 -1.2490 8 1 3.9339 -1.2342 -2.1389 9 6 4.0724 0.7006 -1.2486 10 8 3.2840 1.6221 -1.2486 11 7 5.3974 0.9473 -1.2484 12 6 5.8853 2.3287 -1.2486 13 6 7.4121 2.3303 -1.1506 14 7 7.9714 1.5068 -2.2254 15 6 7.7793 1.8652 -3.5331 16 1 7.1308 2.6938 -3.7763 17 6 8.4181 1.1633 -4.5461 18 7 9.2088 0.1537 -4.2497 19 14 8.1556 1.6517 -6.3299 20 1 8.9441 0.7527 -7.2104 21 1 6.7142 1.5368 -6.6676 22 1 8.6004 3.0544 -6.5296 23 6 7.9301 3.7637 -1.2841 24 6 9.4570 3.7654 -1.1855 25 6 9.8813 3.1938 0.1688 26 6 9.3633 1.7604 0.3023 27 6 7.8369 1.7585 0.2035 28 6 2.0400 -0.7212 -1.2492 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6767 -0.2074 2.1392 33 1 1.6767 -1.7489 1.2493 34 1 3.9330 0.3070 1.2497 35 1 3.9334 -1.2349 2.1393 36 1 3.7175 -2.4694 0.0000 37 1 5.1705 -1.4409 0.0003 38 1 6.0280 0.2102 -1.2480 39 1 5.4659 2.8623 -0.3957 40 1 5.5799 2.8217 -2.1715 41 1 8.4776 0.7078 -2.0108 42 1 9.3454 -0.0997 -3.3234 43 1 7.6277 4.1711 -2.2488 44 1 7.5141 4.3764 -0.4844 45 1 9.8262 4.7866 -1.2811 46 1 9.8734 3.1526 -1.9850 47 1 9.4650 3.8067 0.9683 48 1 10.9691 3.1946 0.2388 49 1 9.6651 1.3534 1.2673 50 1 9.7796 1.1477 -0.4972 51 1 7.4208 2.3712 1.0033 52 1 7.4677 0.7374 0.2987 53 1 1.6767 -0.2074 -2.1392 54 1 1.6766 -1.7488 -1.2492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115699866.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:31 Heat of formation + Delta-G solvation = -85.097670 kcal Electronic energy + Delta-G solvation = -30010.024423 eV Core-core repulsion = 26365.198818 eV Total energy + Delta-G solvation = -3644.825605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.58480 -40.32286 -38.29377 -35.99749 -35.34891 -33.77202 -32.58156 -31.86285 -31.64802 -29.99318 -27.35807 -26.84119 -25.59499 -24.21147 -23.43481 -22.71424 -21.93399 -21.41824 -20.46303 -20.04116 -18.92715 -17.54190 -17.15518 -16.95879 -16.58794 -16.02968 -15.89692 -15.63657 -15.32628 -15.27124 -15.02238 -14.89882 -14.55514 -14.37443 -14.21373 -13.67394 -13.47182 -13.24838 -13.14181 -12.99973 -12.98573 -12.92487 -12.67903 -12.64677 -12.62434 -12.34590 -12.33619 -11.96613 -11.90811 -11.83475 -11.50273 -11.41234 -11.28720 -11.15512 -11.01039 -10.92976 -10.77995 -10.73031 -10.39257 -9.83911 -8.98990 -8.23706 -5.17912 1.56969 1.63251 1.76862 1.79523 2.40048 2.72316 3.48493 3.65968 3.67993 3.78460 3.79694 3.85282 3.93104 4.02403 4.09797 4.25491 4.26704 4.32416 4.39376 4.48471 4.50747 4.58366 4.62559 4.67165 4.68737 4.71432 4.72545 4.82581 4.83593 4.87871 4.92334 4.96975 4.99370 5.05518 5.08235 5.09447 5.13609 5.16369 5.31240 5.33032 5.37829 5.38669 5.41524 5.42944 5.48652 5.52296 5.62048 5.67464 5.77396 5.78111 6.64985 6.71004 7.21482 7.38579 8.11127 8.23322 9.27610 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012052 B = 0.004352 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.660112 B = 6432.119174 C = 7725.091926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 H 0.065 0.935 4 C -0.107 4.107 5 C -0.119 4.119 6 C -0.103 4.103 7 C -0.109 4.109 8 H 0.095 0.905 9 C 0.512 3.488 10 O -0.583 6.583 11 N -0.699 5.699 12 C 0.126 3.874 13 C 0.195 3.805 14 N -0.719 5.719 15 C -0.294 4.294 16 H 0.050 0.950 17 C -0.094 4.094 18 N -0.976 5.976 19 Si 1.108 2.892 20 H -0.295 1.295 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.112 4.112 24 C -0.104 4.104 25 C -0.108 4.108 26 C -0.111 4.111 27 C -0.107 4.107 28 C -0.087 4.087 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.403 0.597 39 H 0.060 0.940 40 H 0.024 0.976 41 H 0.363 0.637 42 H 0.247 0.753 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.037 0.963 47 H 0.074 0.926 48 H 0.061 0.939 49 H 0.078 0.922 50 H 0.040 0.960 51 H 0.081 0.919 52 H 0.062 0.938 53 H 0.044 0.956 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.281 -2.274 14.698 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 H 0.083 0.917 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.141 4.141 7 C -0.130 4.130 8 H 0.113 0.887 9 C 0.300 3.700 10 O -0.465 6.465 11 N -0.349 5.349 12 C -0.001 4.001 13 C 0.105 3.895 14 N -0.362 5.362 15 C -0.427 4.427 16 H 0.068 0.932 17 C -0.287 4.287 18 N -0.625 5.625 19 Si 0.937 3.063 20 H -0.221 1.221 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.152 4.152 24 C -0.142 4.142 25 C -0.145 4.145 26 C -0.149 4.149 27 C -0.145 4.145 28 C -0.125 4.125 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.238 0.762 39 H 0.078 0.922 40 H 0.042 0.958 41 H 0.196 0.804 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.056 0.944 47 H 0.093 0.907 48 H 0.079 0.921 49 H 0.096 0.904 50 H 0.059 0.941 51 H 0.100 0.900 52 H 0.080 0.920 53 H 0.063 0.937 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.540 -1.769 13.059 16.269 hybrid contribution 0.200 0.204 0.742 0.795 sum -9.340 -1.565 13.801 16.738 Atomic orbital electron populations 1.21750 0.94654 1.02041 1.01198 1.21340 0.95998 1.00566 0.94662 0.91666 1.21562 0.94852 1.01070 0.96979 1.21542 0.96383 0.99633 0.98120 1.21522 1.00539 1.00044 0.91973 1.21437 0.98326 0.91678 1.01584 0.88686 1.21105 0.81939 0.92288 0.74709 1.90560 1.55821 1.47939 1.52142 1.45795 1.06765 1.08990 1.73322 1.21615 0.96451 0.82968 0.99018 1.19938 0.89147 0.91646 0.88787 1.42433 1.64416 1.28085 1.01230 1.19924 1.23433 1.13849 0.85461 0.93240 1.26465 0.97909 0.97747 1.06531 1.70976 1.41507 1.30518 1.19482 0.82817 0.75413 0.75169 0.72876 1.22122 1.21847 1.21317 1.21750 0.96503 0.96771 1.00192 1.21286 0.95321 0.99755 0.97862 1.21457 1.00238 0.96177 0.96655 1.21425 0.95044 0.97146 1.01253 1.21649 0.96464 1.01005 0.95339 1.21354 0.91810 1.01240 0.98114 0.91556 0.92553 0.93870 0.91991 0.90452 0.94400 0.90035 0.88656 0.91531 0.76164 0.92156 0.95770 0.80359 0.94223 0.94691 0.91134 0.92472 0.94405 0.90690 0.92068 0.90390 0.94086 0.90038 0.91951 0.93688 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.19 71.98 0.66 -2.14 16 2 C -0.11 -2.57 2.42 -10.79 -0.03 -2.60 16 3 H 0.07 2.07 5.51 -2.39 -0.01 2.06 16 4 C -0.11 -2.06 5.20 30.59 0.16 -1.90 16 5 C -0.12 -2.40 5.70 30.60 0.17 -2.23 16 6 C -0.10 -2.08 5.36 30.60 0.16 -1.92 16 7 C -0.11 -2.85 3.01 -11.52 -0.03 -2.88 16 8 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 9 C 0.51 17.41 5.64 87.66 0.49 17.90 16 10 O -0.58 -23.53 13.66 -3.02 -0.04 -23.57 16 11 N -0.70 -23.90 4.98 -463.07 -2.31 -26.20 16 12 C 0.13 4.63 4.37 86.38 0.38 5.01 16 13 C 0.20 6.85 0.41 3.60 0.00 6.85 16 14 N -0.72 -31.25 3.38 -303.34 -1.03 -32.27 16 15 C -0.29 -15.24 8.70 84.03 0.73 -14.51 16 16 H 0.05 2.67 6.78 -2.91 -0.02 2.66 16 17 C -0.09 -5.20 5.50 84.86 0.47 -4.73 16 18 N -0.98 -57.53 13.70 21.65 0.30 -57.23 16 19 Si 1.11 52.36 29.92 68.60 2.05 54.41 16 20 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 C -0.11 -3.89 4.51 30.59 0.14 -3.75 16 24 C -0.10 -3.49 5.77 30.60 0.18 -3.31 16 25 C -0.11 -2.88 5.92 30.59 0.18 -2.70 16 26 C -0.11 -3.05 5.75 30.58 0.18 -2.87 16 27 C -0.11 -2.98 4.64 30.58 0.14 -2.84 16 28 C -0.09 -2.13 4.38 30.61 0.13 -1.99 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.04 0.95 7.22 -2.39 -0.02 0.93 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.35 7.56 -2.39 -0.02 1.33 16 38 H 0.40 13.33 6.81 -92.71 -0.63 12.70 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.02 1.06 7.51 -2.39 -0.02 1.04 16 41 H 0.36 16.55 5.50 -92.71 -0.51 16.05 16 42 H 0.25 14.27 6.79 -92.70 -0.63 13.64 16 43 H 0.03 1.39 7.23 -2.39 -0.02 1.38 16 44 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.04 1.58 7.61 -2.38 -0.02 1.56 16 47 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 50 H 0.04 1.37 6.93 -2.39 -0.02 1.35 16 51 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 52 H 0.06 1.68 7.29 -2.39 -0.02 1.66 16 53 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 54 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -64.23 394.54 2.96 -61.27 By element: Atomic # 1 Polarization: 44.34 SS G_CDS: -0.14 Total: 44.20 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 4.12 Total: -20.60 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -3.04 Total: -115.71 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.04 Total: -23.57 kcal Atomic # 14 Polarization: 52.36 SS G_CDS: 2.05 Total: 54.41 kcal Total: -64.23 2.96 -61.27 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115699866.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.828 kcal (2) G-P(sol) polarization free energy of solvation -64.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds