Wall clock time and date at job start Tue Mar 31 2020 15:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47056 * 2 1 4 4 C 1.53003 * 109.47220 * 239.99698 * 2 1 3 5 5 C 1.52995 * 109.47220 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.47029 * 59.99895 * 5 4 2 7 7 C 1.52994 * 109.47253 * 300.00281 * 6 5 4 8 8 H 1.08999 * 109.46788 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47066 * 299.99623 * 7 6 5 10 10 O 1.21288 * 119.99925 * 120.00387 * 9 7 6 11 11 N 1.34780 * 120.00294 * 299.99864 * 9 7 6 12 12 C 1.46497 * 120.00226 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47037 * 177.71300 * 12 11 9 14 14 N 1.46500 * 109.47210 * 54.62511 * 13 12 11 15 15 C 1.36936 * 120.00371 * 59.72537 * 14 13 12 16 16 H 1.08003 * 119.99468 * 5.86353 * 15 14 13 17 17 C 1.38805 * 120.00001 * 185.85577 * 15 14 13 18 18 N 1.31617 * 120.00197 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99914 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46970 * 59.99963 * 19 17 15 21 21 H 1.48497 * 109.46982 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47144 * 300.00133 * 19 17 15 23 23 C 1.52998 * 109.47221 * 294.62132 * 13 12 11 24 24 C 1.52996 * 109.47221 * 180.02562 * 23 13 12 25 25 C 1.53005 * 109.46869 * 59.99858 * 24 23 13 26 26 C 1.52997 * 109.47522 * 299.99756 * 25 24 23 27 27 C 1.53005 * 109.46869 * 174.61989 * 13 12 11 28 28 C 1.52995 * 109.47332 * 59.99905 * 7 6 5 29 29 H 1.08997 * 109.47436 * 300.00369 * 1 2 3 30 30 H 1.09001 * 109.47118 * 60.00464 * 1 2 3 31 31 H 1.09004 * 109.47514 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47352 * 300.00120 * 4 2 1 33 33 H 1.08999 * 109.46740 * 60.00126 * 4 2 1 34 34 H 1.08997 * 109.47436 * 179.97438 * 5 4 2 35 35 H 1.09004 * 109.47514 * 300.00220 * 5 4 2 36 36 H 1.09001 * 109.46922 * 180.02562 * 6 5 4 37 37 H 1.08999 * 109.46870 * 60.00292 * 6 5 4 38 38 H 0.96999 * 119.99589 * 0.02562 * 11 9 7 39 39 H 1.08998 * 109.46830 * 57.71249 * 12 11 9 40 40 H 1.09008 * 109.47094 * 297.71818 * 12 11 9 41 41 H 0.97000 * 119.99930 * 239.73567 * 14 13 12 42 42 H 0.97001 * 119.99948 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.47009 * 59.99962 * 23 13 12 44 44 H 1.09003 * 109.46963 * 299.99941 * 23 13 12 45 45 H 1.08998 * 109.47596 * 300.00633 * 24 23 13 46 46 H 1.08997 * 109.47466 * 179.97438 * 24 23 13 47 47 H 1.09004 * 109.46905 * 60.00498 * 25 24 23 48 48 H 1.09010 * 109.46911 * 179.97438 * 25 24 23 49 49 H 1.08998 * 109.47365 * 179.97438 * 26 25 24 50 50 H 1.08994 * 109.47138 * 300.00196 * 26 25 24 51 51 H 1.08994 * 109.47559 * 299.99954 * 27 13 12 52 52 H 1.09004 * 109.46905 * 60.00498 * 27 13 12 53 53 H 1.09004 * 109.47514 * 59.99907 * 28 7 6 54 54 H 1.08997 * 109.47436 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5699 -0.7208 -1.2495 6 6 4.0805 -1.4416 -0.0002 7 6 3.5704 -0.7203 1.2490 8 1 3.9338 -1.2342 2.1389 9 6 4.0723 0.7006 1.2486 10 8 3.2838 1.6222 1.2487 11 7 5.3973 0.9474 1.2484 12 6 5.8851 2.3288 1.2475 13 6 7.4140 2.3297 1.3050 14 7 7.9444 1.5148 0.2092 15 6 7.6574 1.8427 -1.0890 16 1 7.1205 2.7534 -1.3098 17 6 8.0565 1.0046 -2.1210 18 7 8.7104 -0.1055 -1.8518 19 14 7.6656 1.4523 -3.8920 20 1 8.2958 2.7553 -4.2238 21 1 8.1955 0.4008 -4.7968 22 1 6.1941 1.5563 -4.0630 23 6 7.8745 1.7474 2.6428 24 6 9.4033 1.7489 2.7006 25 6 9.9173 3.1836 2.5648 26 6 9.4570 3.7660 1.2270 27 6 7.9286 3.7642 1.1690 28 6 2.0405 -0.7209 1.2493 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6767 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.9333 -1.2350 -2.1392 35 1 3.9330 0.3070 -1.2498 36 1 5.1705 -1.4408 -0.0002 37 1 3.7175 -2.4694 0.0000 38 1 6.0279 0.2103 1.2481 39 1 5.4885 2.8547 2.1160 40 1 5.5553 2.8300 0.3374 41 1 8.4988 0.7429 0.4032 42 1 8.9890 -0.6913 -2.5730 43 1 7.5078 0.7254 2.7397 44 1 7.4798 2.3538 3.4581 45 1 9.7984 1.1429 1.8852 46 1 9.7314 1.3344 3.6538 47 1 9.5224 3.7897 3.3802 48 1 11.0066 3.1847 2.6064 49 1 9.8228 4.7882 1.1306 50 1 9.8520 3.1599 0.4118 51 1 7.6006 4.1791 0.2160 52 1 7.5340 4.3706 1.9844 53 1 1.6774 -1.7487 1.2495 54 1 1.6771 -0.2067 2.1390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115699867.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:35 Heat of formation + Delta-G solvation = -84.398140 kcal Electronic energy + Delta-G solvation = -30262.553905 eV Core-core repulsion = 26617.758634 eV Total energy + Delta-G solvation = -3644.795272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.50683 -40.21655 -38.25034 -35.85686 -35.04885 -33.72413 -32.58666 -31.86507 -31.55505 -30.19776 -27.30977 -26.79479 -25.68010 -24.14597 -23.37695 -22.70944 -21.81697 -21.35869 -20.37062 -19.71690 -18.98216 -17.47046 -17.05563 -16.63076 -16.52916 -15.98141 -15.90956 -15.58142 -15.32478 -15.26667 -14.93576 -14.66724 -14.54758 -14.29484 -14.12799 -13.52937 -13.39100 -13.28749 -13.19636 -12.98717 -12.92254 -12.89216 -12.79220 -12.64616 -12.59802 -12.51655 -12.31150 -12.08533 -11.91958 -11.85518 -11.68508 -11.47728 -11.20936 -11.13852 -10.99589 -10.92135 -10.75394 -10.69267 -10.32737 -9.74734 -8.88302 -7.86313 -5.09438 1.42120 1.44818 1.48107 1.83498 2.49945 2.59587 3.46911 3.73199 3.79751 3.81656 3.83383 3.93578 4.03804 4.10051 4.14640 4.26755 4.33169 4.40520 4.47669 4.50502 4.53308 4.62266 4.66926 4.71541 4.76843 4.78999 4.81892 4.84875 4.91521 4.94315 4.97228 4.99082 5.03303 5.08183 5.09754 5.18781 5.19806 5.22052 5.32711 5.35853 5.43351 5.47028 5.48596 5.49985 5.51573 5.59324 5.61833 5.70310 5.79413 5.83494 6.36558 6.80569 7.45947 7.47515 8.18400 8.45419 9.35670 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.005097 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.679442 B = 5492.337789 C = 7027.737785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 H 0.061 0.939 4 C -0.105 4.105 5 C -0.121 4.121 6 C -0.100 4.100 7 C -0.103 4.103 8 H 0.118 0.882 9 C 0.510 3.490 10 O -0.585 6.585 11 N -0.698 5.698 12 C 0.126 3.874 13 C 0.190 3.810 14 N -0.706 5.706 15 C -0.202 4.202 16 H 0.055 0.945 17 C -0.055 4.055 18 N -0.955 5.955 19 Si 0.936 3.064 20 H -0.288 1.288 21 H -0.297 1.297 22 H -0.294 1.294 23 C -0.107 4.107 24 C -0.112 4.112 25 C -0.108 4.108 26 C -0.106 4.106 27 C -0.116 4.116 28 C -0.084 4.084 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.023 0.977 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.404 0.596 39 H 0.061 0.939 40 H 0.024 0.976 41 H 0.378 0.622 42 H 0.246 0.754 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.061 0.939 49 H 0.057 0.943 50 H 0.042 0.958 51 H 0.035 0.965 52 H 0.070 0.930 53 H 0.091 0.909 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.690 -2.209 11.121 13.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 H 0.079 0.921 4 C -0.143 4.143 5 C -0.159 4.159 6 C -0.138 4.138 7 C -0.124 4.124 8 H 0.136 0.864 9 C 0.297 3.703 10 O -0.466 6.466 11 N -0.348 5.348 12 C -0.001 4.001 13 C 0.099 3.901 14 N -0.347 5.347 15 C -0.335 4.335 16 H 0.073 0.927 17 C -0.248 4.248 18 N -0.606 5.606 19 Si 0.769 3.231 20 H -0.215 1.215 21 H -0.223 1.223 22 H -0.221 1.221 23 C -0.144 4.144 24 C -0.150 4.150 25 C -0.145 4.145 26 C -0.143 4.143 27 C -0.155 4.155 28 C -0.121 4.121 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.240 0.760 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.212 0.788 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.061 0.939 51 H 0.054 0.946 52 H 0.089 0.911 53 H 0.110 0.890 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.283 -1.479 10.969 13.824 hybrid contribution 0.570 0.031 -1.870 1.956 sum -7.713 -1.448 9.099 12.015 Atomic orbital electron populations 1.21727 0.94196 1.02185 1.01253 1.21342 0.96270 1.00397 0.94656 0.92062 1.21558 0.93903 1.01282 0.97510 1.21486 0.96908 0.99079 0.98426 1.21447 1.00153 0.99960 0.92260 1.21413 0.98349 0.91580 1.01038 0.86438 1.21129 0.82017 0.92317 0.74787 1.90556 1.55847 1.47943 1.52295 1.45812 1.06788 1.09101 1.73053 1.21617 0.96466 0.82966 0.99018 1.20016 0.89233 0.91870 0.88936 1.42423 1.59520 1.32343 1.00402 1.19050 1.27446 1.02414 0.84564 0.92671 1.25008 1.02865 0.97540 0.99431 1.69713 1.45905 1.14007 1.30990 0.85774 0.77115 0.76633 0.83580 1.21477 1.22338 1.22121 1.21647 0.96420 1.00898 0.95475 1.21438 0.95014 0.97171 1.01337 1.21454 1.00121 0.96088 0.96833 1.21296 0.95154 0.99796 0.98096 1.21799 0.96594 0.96883 1.00273 1.21336 0.91642 1.01367 0.97781 0.92939 0.93324 0.91309 0.90025 0.93205 0.92640 0.95785 0.92617 0.88414 0.75998 0.92117 0.95750 0.78840 0.94474 0.92077 0.90076 0.93699 0.90627 0.90884 0.92035 0.92450 0.93941 0.94637 0.91136 0.89013 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.19 71.98 0.66 -2.35 16 2 C -0.11 -2.97 2.43 -10.79 -0.03 -3.00 16 3 H 0.06 2.21 5.51 -2.39 -0.01 2.20 16 4 C -0.11 -2.83 5.20 30.59 0.16 -2.67 16 5 C -0.12 -3.94 5.70 30.60 0.17 -3.77 16 6 C -0.10 -2.76 5.36 30.59 0.16 -2.60 16 7 C -0.10 -2.70 3.01 -11.54 -0.03 -2.73 16 8 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 9 C 0.51 17.57 5.64 87.66 0.49 18.06 16 10 O -0.58 -23.75 13.66 -3.05 -0.04 -23.79 16 11 N -0.70 -24.26 4.99 -463.06 -2.31 -26.58 16 12 C 0.13 4.61 4.31 86.38 0.37 4.98 16 13 C 0.19 6.57 0.40 3.60 0.00 6.58 16 14 N -0.71 -30.45 3.46 -303.35 -1.05 -31.50 16 15 C -0.20 -10.30 8.72 84.03 0.73 -9.57 16 16 H 0.06 2.92 6.75 -2.91 -0.02 2.90 16 17 C -0.06 -3.01 5.50 84.86 0.47 -2.54 16 18 N -0.95 -54.06 13.07 21.65 0.28 -53.78 16 19 Si 0.94 46.14 29.55 68.60 2.03 48.16 16 20 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 21 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 22 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 23 C -0.11 -2.96 4.66 30.59 0.14 -2.82 16 24 C -0.11 -3.02 5.75 30.59 0.18 -2.85 16 25 C -0.11 -2.77 5.92 30.60 0.18 -2.59 16 26 C -0.11 -3.36 5.76 30.58 0.18 -3.19 16 27 C -0.12 -3.86 4.56 30.58 0.14 -3.72 16 28 C -0.08 -2.00 4.37 30.59 0.13 -1.86 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.02 0.97 7.22 -2.38 -0.02 0.95 16 36 H 0.06 1.75 7.56 -2.39 -0.02 1.74 16 37 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.40 13.81 6.79 -92.71 -0.63 13.18 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.02 1.06 7.57 -2.38 -0.02 1.04 16 41 H 0.38 17.55 6.52 -92.71 -0.60 16.94 16 42 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 43 H 0.06 1.68 7.26 -2.39 -0.02 1.66 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.04 1.48 6.86 -2.39 -0.02 1.46 16 46 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 48 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 49 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.04 1.68 7.61 -2.39 -0.02 1.66 16 51 H 0.03 1.36 7.18 -2.39 -0.02 1.34 16 52 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 53 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 54 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 Total: -1.00 -61.57 396.06 2.65 -58.91 By element: Atomic # 1 Polarization: 45.59 SS G_CDS: -0.37 Total: 45.22 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 4.12 Total: -16.64 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -3.08 Total: -111.86 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.04 Total: -23.79 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -61.57 2.65 -58.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115699867.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.486 kcal (2) G-P(sol) polarization free energy of solvation -61.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds