Wall clock time and date at job start Tue Mar 31 2020 15:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47354 * 2 1 4 4 C 1.53000 * 109.47109 * 120.00136 * 2 1 3 5 5 C 1.53001 * 109.47073 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47255 * 300.00336 * 5 4 2 7 7 C 1.53000 * 109.47354 * 59.99836 * 6 5 4 8 8 H 1.09003 * 109.47124 * 60.00157 * 7 6 5 9 9 C 1.50695 * 109.47347 * 179.97438 * 7 6 5 10 10 O 1.21284 * 120.00167 * 119.99597 * 9 7 6 11 11 N 1.34774 * 120.00027 * 300.00553 * 9 7 6 12 12 C 1.46505 * 120.00134 * 180.02562 * 11 9 7 13 13 C 1.52992 * 109.47362 * 176.13129 * 12 11 9 14 14 N 1.46498 * 109.47360 * 54.67291 * 13 12 11 15 15 C 1.36946 * 119.99842 * 63.26161 * 14 13 12 16 16 H 1.08001 * 119.99358 * 353.59898 * 15 14 13 17 17 C 1.38805 * 119.99767 * 173.60133 * 15 14 13 18 18 N 1.31616 * 120.00491 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99809 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47114 * 179.97438 * 19 17 15 21 21 H 1.48496 * 109.46742 * 300.00150 * 19 17 15 22 22 H 1.48507 * 109.46853 * 59.99845 * 19 17 15 23 23 C 1.53001 * 109.47410 * 174.67610 * 13 12 11 24 24 C 1.52997 * 109.47512 * 179.97438 * 23 13 12 25 25 C 1.52995 * 109.47338 * 300.00279 * 24 23 13 26 26 C 1.53001 * 109.47047 * 59.99436 * 25 24 23 27 27 C 1.52992 * 109.47410 * 300.00130 * 26 25 24 28 28 C 1.53001 * 109.47073 * 300.00275 * 7 6 5 29 29 H 1.08996 * 109.47224 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46894 * 299.99879 * 1 2 3 31 31 H 1.09001 * 109.46682 * 59.99671 * 1 2 3 32 32 H 1.08988 * 109.47047 * 299.99665 * 4 2 1 33 33 H 1.08996 * 109.46859 * 60.00044 * 4 2 1 34 34 H 1.09003 * 109.47050 * 60.00073 * 5 4 2 35 35 H 1.09001 * 109.47388 * 180.02562 * 5 4 2 36 36 H 1.09003 * 109.46877 * 299.99843 * 6 5 4 37 37 H 1.09003 * 109.47122 * 180.02562 * 6 5 4 38 38 H 0.96998 * 120.00200 * 359.97438 * 11 9 7 39 39 H 1.08999 * 109.47203 * 56.12424 * 12 11 9 40 40 H 1.09008 * 109.46649 * 296.13371 * 12 11 9 41 41 H 0.97000 * 120.00103 * 243.26027 * 14 13 12 42 42 H 0.96996 * 120.00023 * 359.97438 * 18 17 15 43 43 H 1.09002 * 109.47022 * 300.00253 * 23 13 12 44 44 H 1.09006 * 109.47092 * 59.99355 * 23 13 12 45 45 H 1.08998 * 109.46972 * 179.97438 * 24 23 13 46 46 H 1.09005 * 109.46461 * 59.99780 * 24 23 13 47 47 H 1.09004 * 109.46973 * 300.00173 * 25 24 23 48 48 H 1.09003 * 109.47591 * 179.97438 * 25 24 23 49 49 H 1.09002 * 109.47022 * 179.97438 * 26 25 24 50 50 H 1.08998 * 109.47319 * 60.00492 * 26 25 24 51 51 H 1.09004 * 109.47548 * 299.99838 * 27 26 25 52 52 H 1.09004 * 109.47522 * 180.02562 * 27 26 25 53 53 H 1.08994 * 109.47023 * 179.97438 * 28 7 6 54 54 H 1.09003 * 109.47050 * 299.99927 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7218 1.2489 6 6 4.0795 -1.4434 -0.0004 7 6 3.5695 -0.7221 -1.2497 8 1 3.9332 0.3055 -1.2499 9 6 4.0719 -1.4324 -2.4801 10 8 3.2838 -1.8933 -3.2785 11 7 5.3969 -1.5555 -2.6934 12 6 5.8853 -2.2456 -3.8899 13 6 7.4122 -2.1620 -3.9393 14 7 7.9705 -2.6822 -2.6888 15 6 7.7781 -3.9942 -2.3465 16 1 7.1299 -4.6184 -2.9437 17 6 8.4160 -4.5214 -1.2322 18 7 9.2054 -3.7604 -0.5042 19 14 8.1528 -6.3109 -0.7649 20 1 8.9404 -6.6250 0.4542 21 1 6.7111 -6.5457 -0.4977 22 1 8.5983 -7.1843 -1.8802 23 6 7.9307 -2.9936 -5.1143 24 6 9.4576 -2.9095 -5.1642 25 6 9.8824 -1.4509 -5.3449 26 6 9.3639 -0.6193 -4.1700 27 6 7.8371 -0.7033 -4.1202 28 6 2.0395 -0.7215 -1.2493 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6768 -0.2075 2.1391 33 1 1.6767 -1.7489 1.2492 34 1 3.9337 0.3057 1.2487 35 1 3.9334 -1.2361 2.1386 36 1 3.7158 -2.4709 -0.0002 37 1 5.1696 -1.4441 -0.0004 38 1 6.0273 -1.1867 -2.0550 39 1 5.4666 -1.7729 -4.7783 40 1 5.5795 -3.2913 -3.8564 41 1 8.4766 -2.0974 -2.1033 42 1 9.3418 -2.8312 -0.7466 43 1 7.6277 -4.0327 -4.9857 44 1 7.5153 -2.6065 -6.0448 45 1 9.8269 -3.5023 -6.0010 46 1 9.8733 -3.2963 -4.2337 47 1 9.4666 -1.0640 -6.2753 48 1 10.9703 -1.3909 -5.3800 49 1 9.6670 0.4198 -4.2985 50 1 9.7796 -1.0061 -3.2396 51 1 7.4213 -0.3164 -5.0506 52 1 7.4676 -0.1105 -3.2834 53 1 1.6762 -0.2073 -2.1390 54 1 1.6758 -1.7491 -1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115699868.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:39 Heat of formation + Delta-G solvation = -91.357179 kcal Electronic energy + Delta-G solvation = -29584.811477 eV Core-core repulsion = 25939.714439 eV Total energy + Delta-G solvation = -3645.097038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.36819 -40.26130 -38.77487 -36.01535 -35.33779 -33.77963 -32.67876 -31.88649 -31.64825 -29.99396 -27.40732 -26.84006 -25.59490 -24.31219 -23.44374 -22.62558 -21.89908 -21.06246 -20.63749 -20.12222 -18.97512 -17.99189 -17.19918 -16.90926 -16.32336 -16.12515 -15.93458 -15.57381 -15.41841 -15.21770 -15.02611 -14.93643 -14.66582 -14.55130 -14.20436 -13.70345 -13.48408 -13.42218 -13.29583 -13.14854 -12.97500 -12.74195 -12.66275 -12.63691 -12.40448 -12.34900 -12.14228 -11.96881 -11.91134 -11.88910 -11.45462 -11.41806 -11.37981 -11.28966 -11.15976 -11.00630 -10.81670 -10.74170 -10.55711 -9.93485 -8.99053 -8.23342 -5.17692 1.56428 1.62546 1.66715 1.78791 2.35032 2.71762 3.48471 3.62453 3.66611 3.69530 3.74078 3.84607 3.92555 4.02454 4.14282 4.16014 4.25127 4.31654 4.36546 4.39245 4.49172 4.53273 4.58016 4.63428 4.66897 4.68729 4.72134 4.78664 4.81848 4.86056 4.88712 4.97737 4.99691 5.06663 5.09357 5.13410 5.14007 5.18241 5.26819 5.32269 5.36943 5.37878 5.38463 5.41701 5.42597 5.50879 5.58543 5.62160 5.67772 5.77476 6.63695 6.66177 7.21455 7.29919 8.10978 8.23284 9.27854 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.004213 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.438156 B = 6645.034834 C = 8053.054153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.084 0.916 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.107 4.107 7 C -0.095 4.095 8 H 0.117 0.883 9 C 0.505 3.495 10 O -0.594 6.594 11 N -0.697 5.697 12 C 0.123 3.877 13 C 0.196 3.804 14 N -0.719 5.719 15 C -0.294 4.294 16 H 0.049 0.951 17 C -0.092 4.092 18 N -0.975 5.975 19 Si 1.106 2.894 20 H -0.295 1.295 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.113 4.113 24 C -0.105 4.105 25 C -0.108 4.108 26 C -0.111 4.111 27 C -0.108 4.108 28 C -0.087 4.087 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.057 0.943 38 H 0.404 0.596 39 H 0.063 0.937 40 H 0.025 0.975 41 H 0.363 0.637 42 H 0.247 0.753 43 H 0.034 0.966 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.037 0.963 47 H 0.075 0.925 48 H 0.061 0.939 49 H 0.078 0.922 50 H 0.040 0.960 51 H 0.083 0.917 52 H 0.062 0.938 53 H 0.061 0.939 54 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.270 12.460 -2.063 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 H 0.103 0.897 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.145 4.145 7 C -0.116 4.116 8 H 0.135 0.865 9 C 0.293 3.707 10 O -0.476 6.476 11 N -0.346 5.346 12 C -0.004 4.004 13 C 0.105 3.895 14 N -0.362 5.362 15 C -0.427 4.427 16 H 0.067 0.933 17 C -0.284 4.284 18 N -0.624 5.624 19 Si 0.935 3.065 20 H -0.221 1.221 21 H -0.219 1.219 22 H -0.213 1.213 23 C -0.152 4.152 24 C -0.142 4.142 25 C -0.145 4.145 26 C -0.149 4.149 27 C -0.146 4.146 28 C -0.125 4.125 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.241 0.759 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.197 0.803 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.056 0.944 47 H 0.093 0.907 48 H 0.079 0.921 49 H 0.096 0.904 50 H 0.059 0.941 51 H 0.101 0.899 52 H 0.080 0.920 53 H 0.079 0.921 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.524 10.784 -1.682 14.486 hybrid contribution 0.218 0.568 -0.685 0.916 sum -9.306 11.352 -2.366 14.869 Atomic orbital electron populations 1.21801 0.94340 1.01710 1.02354 1.21140 0.96169 0.99762 0.93368 0.89741 1.21623 0.94832 1.00516 0.98117 1.21503 0.96143 1.01150 0.96093 1.21464 1.00167 0.98712 0.94148 1.21331 0.98079 1.00894 0.91280 0.86532 1.21306 0.82096 0.79492 0.87810 1.90616 1.56370 1.51427 1.49191 1.45797 1.06687 1.56895 1.25261 1.21681 0.96640 0.95051 0.87021 1.19933 0.89004 0.93703 0.86855 1.42436 1.64447 1.08375 1.20916 1.19907 1.23486 0.88994 1.10273 0.93321 1.26416 0.97901 1.08123 0.95991 1.70974 1.41503 1.07640 1.42246 0.82845 0.75387 0.72548 0.75679 1.22078 1.21931 1.21314 1.21754 0.96522 0.99248 0.97709 1.21283 0.95295 0.97312 1.00338 1.21458 1.00243 0.94287 0.98538 1.21433 0.94988 1.00077 0.98376 1.21674 0.96528 0.94026 1.02378 1.21344 0.91923 1.00592 0.98623 0.93431 0.91164 0.92493 0.90015 0.93043 0.90173 0.91537 0.93892 0.92385 0.75949 0.91906 0.95684 0.80321 0.94210 0.94672 0.91056 0.92441 0.94404 0.90653 0.92055 0.90370 0.94076 0.89891 0.91965 0.92051 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.19 71.98 0.66 -1.68 16 2 C -0.09 -1.58 2.72 -10.79 -0.03 -1.61 16 3 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.11 -2.09 5.20 30.59 0.16 -1.93 16 5 C -0.11 -2.30 5.92 30.60 0.18 -2.12 16 6 C -0.11 -2.92 5.10 30.60 0.16 -2.76 16 7 C -0.09 -2.52 2.52 -11.54 -0.03 -2.55 16 8 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 9 C 0.51 17.72 7.15 87.66 0.63 18.34 16 10 O -0.59 -25.11 15.99 -3.04 -0.05 -25.15 16 11 N -0.70 -24.18 4.98 -463.06 -2.31 -26.49 16 12 C 0.12 4.55 4.37 86.38 0.38 4.93 16 13 C 0.20 6.87 0.41 3.60 0.00 6.87 16 14 N -0.72 -31.25 3.38 -303.35 -1.03 -32.27 16 15 C -0.29 -15.23 8.70 84.03 0.73 -14.50 16 16 H 0.05 2.64 6.78 -2.91 -0.02 2.62 16 17 C -0.09 -5.05 5.50 84.86 0.47 -4.59 16 18 N -0.97 -57.25 13.70 21.65 0.30 -56.95 16 19 Si 1.11 52.39 29.92 68.60 2.05 54.44 16 20 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 23 C -0.11 -3.89 4.51 30.59 0.14 -3.76 16 24 C -0.10 -3.49 5.77 30.59 0.18 -3.31 16 25 C -0.11 -2.88 5.92 30.59 0.18 -2.70 16 26 C -0.11 -3.05 5.75 30.59 0.18 -2.87 16 27 C -0.11 -3.02 4.64 30.59 0.14 -2.88 16 28 C -0.09 -2.17 3.77 30.60 0.12 -2.06 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.75 7.57 -2.39 -0.02 1.73 16 38 H 0.40 13.45 6.82 -92.71 -0.63 12.82 16 39 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.02 1.10 7.51 -2.38 -0.02 1.09 16 41 H 0.36 16.54 5.50 -92.71 -0.51 16.03 16 42 H 0.25 14.23 6.79 -92.71 -0.63 13.60 16 43 H 0.03 1.40 7.23 -2.39 -0.02 1.38 16 44 H 0.07 2.08 8.14 -2.38 -0.02 2.07 16 45 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.04 1.58 7.60 -2.38 -0.02 1.56 16 47 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.04 1.37 6.93 -2.39 -0.02 1.35 16 51 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 52 H 0.06 1.68 7.29 -2.38 -0.02 1.66 16 53 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 54 H 0.04 1.33 8.10 -2.39 -0.02 1.31 16 Total: -1.00 -64.88 401.08 3.06 -61.82 By element: Atomic # 1 Polarization: 43.91 SS G_CDS: -0.14 Total: 43.76 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 4.23 Total: -19.15 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -3.04 Total: -115.72 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.05 Total: -25.15 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.05 Total: 54.44 kcal Total: -64.88 3.06 -61.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115699868.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.537 kcal (2) G-P(sol) polarization free energy of solvation -64.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds