Wall clock time and date at job start Tue Mar 31 2020 15:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.43861 * 2 1 4 4 C 1.54886 * 110.59905 * 237.38430 * 2 1 3 5 5 C 1.54892 * 102.74973 * 203.32427 * 4 2 1 6 6 C 1.54369 * 104.19515 * 37.96843 * 5 4 2 7 7 C 1.53871 * 106.54672 * 336.34810 * 6 5 4 8 8 C 1.53004 * 110.02981 * 119.35058 * 7 6 5 9 9 C 1.50696 * 110.03576 * 240.73082 * 7 6 5 10 10 O 1.21280 * 120.00009 * 117.91079 * 9 7 6 11 11 N 1.34779 * 120.00305 * 297.90886 * 9 7 6 12 12 C 1.46496 * 120.00411 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47424 * 177.64414 * 12 11 9 14 14 N 1.46495 * 109.46795 * 54.62678 * 13 12 11 15 15 C 1.36927 * 120.00395 * 59.73457 * 14 13 12 16 16 H 1.07998 * 120.00146 * 4.90897 * 15 14 13 17 17 C 1.38819 * 120.00310 * 184.91458 * 15 14 13 18 18 N 1.31618 * 120.00130 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99783 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47398 * 89.99716 * 19 17 15 21 21 H 1.48496 * 109.47383 * 210.00026 * 19 17 15 22 22 H 1.48498 * 109.47201 * 329.99973 * 19 17 15 23 23 C 1.52996 * 109.46712 * 294.62306 * 13 12 11 24 24 C 1.53005 * 109.46989 * 179.97438 * 23 13 12 25 25 C 1.53002 * 109.46757 * 59.99900 * 24 23 13 26 26 C 1.52999 * 109.47696 * 300.00297 * 25 24 23 27 27 C 1.53001 * 109.46983 * 59.99796 * 26 25 24 28 28 H 1.09005 * 109.46963 * 297.46033 * 1 2 3 29 29 H 1.08999 * 109.47296 * 57.45802 * 1 2 3 30 30 H 1.08999 * 109.47342 * 177.46349 * 1 2 3 31 31 H 1.09003 * 110.75274 * 321.63544 * 4 2 1 32 32 H 1.08997 * 110.75922 * 85.00363 * 4 2 1 33 33 H 1.09003 * 110.48477 * 156.62094 * 5 4 2 34 34 H 1.08997 * 110.48431 * 279.12975 * 5 4 2 35 35 H 1.09007 * 110.04204 * 217.08949 * 6 5 4 36 36 H 1.08995 * 110.07362 * 95.63023 * 6 5 4 37 37 H 1.08996 * 109.47529 * 182.09304 * 8 7 6 38 38 H 1.08997 * 109.47158 * 302.09503 * 8 7 6 39 39 H 1.09003 * 109.46964 * 62.09475 * 8 7 6 40 40 H 0.96995 * 119.99598 * 0.02562 * 11 9 7 41 41 H 1.09008 * 109.46885 * 57.64024 * 12 11 9 42 42 H 1.09004 * 109.47262 * 297.64899 * 12 11 9 43 43 H 0.97007 * 119.99219 * 239.72987 * 14 13 12 44 44 H 0.97000 * 119.99911 * 179.97438 * 18 17 15 45 45 H 1.08996 * 109.47273 * 60.00332 * 23 13 12 46 46 H 1.09000 * 109.47635 * 299.99658 * 23 13 12 47 47 H 1.08989 * 109.47443 * 180.02562 * 24 23 13 48 48 H 1.08999 * 109.47320 * 300.00543 * 24 23 13 49 49 H 1.09000 * 109.47070 * 60.00615 * 25 24 23 50 50 H 1.09004 * 109.47219 * 179.97438 * 25 24 23 51 51 H 1.08989 * 109.47176 * 179.97438 * 26 25 24 52 52 H 1.09003 * 109.46615 * 300.00373 * 26 25 24 53 53 H 1.08999 * 109.47283 * 60.00113 * 27 26 25 54 54 H 1.08994 * 109.46855 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0749 -0.7815 -1.2212 5 6 3.4937 -1.1947 -0.7572 6 6 3.3182 -1.5379 0.7376 7 6 2.0699 -0.7773 1.2182 8 6 1.0146 -1.7655 1.7190 9 6 2.4419 0.1821 2.3192 10 8 2.2832 1.3744 2.1639 11 7 2.9511 -0.2849 3.4765 12 6 3.3132 0.6477 4.5466 13 6 3.8075 -0.1383 5.7626 14 7 4.8996 -1.0271 5.3585 15 6 6.0406 -0.5047 4.8106 16 1 6.1689 0.5659 4.7492 17 6 7.0324 -1.3510 4.3341 18 7 8.1289 -0.8488 3.8071 19 14 6.8108 -3.2027 4.4409 20 1 6.1455 -3.6937 3.2074 21 1 8.1385 -3.8530 4.5796 22 1 5.9720 -3.5336 5.6208 23 6 2.6575 -0.9702 6.3339 24 6 3.1519 -1.7568 7.5496 25 6 3.6560 -0.7829 8.6165 26 6 4.8059 0.0492 8.0453 27 6 4.3115 0.8357 6.8296 28 1 -0.3633 0.4739 0.9119 29 1 -0.3634 0.5528 -0.8663 30 1 -0.3634 -1.0266 -0.0455 31 1 1.4626 -1.6608 -1.4216 32 1 2.1277 -0.1380 -2.0994 33 1 3.8368 -2.0685 -1.3111 34 1 4.1919 -0.3670 -0.8817 35 1 4.1932 -1.2130 1.3007 36 1 3.1720 -2.6110 0.8604 37 1 0.1210 -1.2201 2.0223 38 1 0.7614 -2.4624 0.9202 39 1 1.4099 -2.3180 2.5715 40 1 3.0783 -1.2384 3.6005 41 1 2.4400 1.2375 4.8255 42 1 4.1038 1.3121 4.1975 43 1 4.8144 -1.9859 5.4791 44 1 8.8220 -1.4402 3.4744 45 1 2.2988 -1.6643 5.5739 46 1 1.8450 -0.3088 6.6346 47 1 2.3329 -2.3498 7.9563 48 1 3.9643 -2.4182 7.2486 49 1 2.8436 -0.1215 8.9176 50 1 4.0078 -1.3431 9.4828 51 1 5.1646 0.7432 8.8052 52 1 5.6183 -0.6123 7.7442 53 1 3.4991 1.4971 7.1306 54 1 5.1308 1.4280 6.4224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115715282.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:29 Heat of formation + Delta-G solvation = -76.873692 kcal Electronic energy + Delta-G solvation = -30303.284328 eV Core-core repulsion = 26658.815341 eV Total energy + Delta-G solvation = -3644.468987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.65511 -40.36384 -38.52101 -35.95511 -35.10917 -33.23105 -32.58365 -31.92078 -31.61326 -30.58263 -27.04703 -26.54869 -25.74914 -25.40799 -23.56605 -22.59296 -21.81092 -21.27786 -19.95341 -19.74426 -19.38908 -18.07239 -17.06545 -16.62630 -16.35736 -16.29745 -15.91584 -15.57081 -15.26644 -15.12153 -14.96810 -14.81230 -14.57908 -14.30894 -14.15557 -13.95006 -13.63420 -13.40224 -13.32133 -13.06688 -12.96230 -12.82962 -12.68933 -12.61628 -12.38643 -12.30997 -12.06404 -11.97063 -11.93639 -11.72051 -11.70169 -11.52675 -11.41086 -11.34996 -11.29949 -11.20388 -10.86088 -10.76308 -10.53038 -9.89006 -9.25156 -7.93537 -5.26647 1.37200 1.41631 1.48795 1.74002 2.38069 2.52856 3.37411 3.44696 3.53072 3.60911 3.78102 3.86328 3.93441 4.04713 4.15582 4.28440 4.34687 4.37161 4.38324 4.42745 4.52434 4.60684 4.63493 4.67231 4.70445 4.70957 4.75586 4.83099 4.86295 4.91259 4.93589 4.98730 5.02882 5.03649 5.08601 5.14715 5.15436 5.20266 5.21589 5.30540 5.38459 5.40787 5.41175 5.44246 5.47258 5.54033 5.58236 5.66712 5.71977 5.88350 6.29383 6.69950 7.16426 7.36138 7.89571 8.10957 9.28682 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.005088 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.236149 B = 5502.148324 C = 6756.027935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 H 0.054 0.946 4 C -0.106 4.106 5 C -0.126 4.126 6 C -0.118 4.118 7 C -0.075 4.075 8 C -0.132 4.132 9 C 0.512 3.488 10 O -0.594 6.594 11 N -0.695 5.695 12 C 0.126 3.874 13 C 0.196 3.804 14 N -0.729 5.729 15 C -0.196 4.196 16 H 0.046 0.954 17 C -0.065 4.065 18 N -0.990 5.990 19 Si 0.944 3.056 20 H -0.276 1.276 21 H -0.310 1.310 22 H -0.246 1.246 23 C -0.111 4.111 24 C -0.115 4.115 25 C -0.109 4.109 26 C -0.107 4.107 27 C -0.115 4.115 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.034 0.966 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.404 0.596 41 H 0.066 0.934 42 H 0.019 0.981 43 H 0.367 0.633 44 H 0.252 0.748 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.046 0.954 49 H 0.074 0.926 50 H 0.065 0.935 51 H 0.056 0.944 52 H 0.043 0.957 53 H 0.073 0.927 54 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.148 -6.286 -0.520 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.144 4.144 5 C -0.163 4.163 6 C -0.156 4.156 7 C -0.078 4.078 8 C -0.189 4.189 9 C 0.300 3.700 10 O -0.476 6.476 11 N -0.345 5.345 12 C -0.001 4.001 13 C 0.106 3.894 14 N -0.373 5.373 15 C -0.327 4.327 16 H 0.064 0.936 17 C -0.255 4.255 18 N -0.641 5.641 19 Si 0.773 3.227 20 H -0.202 1.202 21 H -0.237 1.237 22 H -0.171 1.171 23 C -0.148 4.148 24 C -0.153 4.153 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.155 4.155 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.241 0.759 41 H 0.084 0.916 42 H 0.038 0.962 43 H 0.202 0.798 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.105 0.895 47 H 0.102 0.898 48 H 0.064 0.936 49 H 0.093 0.907 50 H 0.083 0.917 51 H 0.075 0.925 52 H 0.061 0.939 53 H 0.092 0.908 54 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -19.127 -5.309 -0.660 19.861 hybrid contribution 1.568 -0.667 -0.032 1.705 sum -17.558 -5.977 -0.693 18.561 Atomic orbital electron populations 1.21805 0.93116 1.02933 1.01303 1.21901 0.97049 0.98376 0.92835 0.92799 1.22538 0.94952 1.00322 0.96559 1.22358 0.98016 1.01191 0.94761 1.22304 0.95333 1.00922 0.97032 1.21477 0.97637 0.95279 0.93425 1.21973 0.97062 0.97734 1.02178 1.21170 0.76014 0.89251 0.83556 1.90598 1.56938 1.18691 1.81324 1.45701 1.62707 1.11082 1.14970 1.21625 0.97721 0.92127 0.88599 1.19998 0.88071 0.90750 0.90630 1.42719 1.15235 1.04681 1.74689 1.18689 0.93943 0.91902 1.28207 0.93601 1.25381 0.96593 1.01904 1.01652 1.69905 1.09953 1.35291 1.48991 0.85568 0.76505 0.81589 0.79052 1.20163 1.23740 1.17084 1.21724 0.96316 0.98990 0.97813 1.21500 1.00642 0.97812 0.95301 1.21472 0.97669 0.97854 0.97597 1.21327 0.98556 0.98587 0.96045 1.21778 0.99773 0.97793 0.96165 0.93990 0.91993 0.90034 0.88797 0.90853 0.89733 0.93883 0.94656 0.88828 0.91372 0.88925 0.91936 0.75943 0.91616 0.96227 0.79803 0.93962 0.91276 0.89477 0.89826 0.93564 0.90718 0.91659 0.92514 0.93854 0.90816 0.95304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 7.97 71.98 0.57 -2.09 16 2 C -0.08 -2.11 2.69 -9.72 -0.03 -2.13 16 3 H 0.05 1.79 6.89 -2.38 -0.02 1.77 16 4 C -0.11 -2.18 6.33 31.88 0.20 -1.98 16 5 C -0.13 -3.17 6.83 31.71 0.22 -2.95 16 6 C -0.12 -3.34 6.05 31.35 0.19 -3.16 16 7 C -0.08 -2.03 0.70 -52.21 -0.04 -2.07 16 8 C -0.13 -2.53 6.89 71.98 0.50 -2.04 16 9 C 0.51 18.43 6.28 87.66 0.55 18.98 16 10 O -0.59 -25.99 15.41 -3.03 -0.05 -26.04 16 11 N -0.70 -24.06 4.86 -463.06 -2.25 -26.31 16 12 C 0.13 4.66 4.31 86.38 0.37 5.04 16 13 C 0.20 6.57 0.40 3.60 0.00 6.57 16 14 N -0.73 -29.85 3.26 -303.36 -0.99 -30.84 16 15 C -0.20 -10.45 9.21 84.04 0.77 -9.67 16 16 H 0.05 2.84 6.98 -2.91 -0.02 2.82 16 17 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 18 N -0.99 -63.23 13.97 21.65 0.30 -62.92 16 19 Si 0.94 43.38 27.78 68.60 1.91 45.28 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.31 -15.06 7.11 99.48 0.71 -14.35 16 22 H -0.25 -9.87 6.45 99.48 0.64 -9.23 16 23 C -0.11 -2.74 4.66 30.59 0.14 -2.59 16 24 C -0.12 -2.67 5.75 30.60 0.18 -2.50 16 25 C -0.11 -2.53 5.92 30.59 0.18 -2.35 16 26 C -0.11 -3.32 5.77 30.59 0.18 -3.14 16 27 C -0.12 -3.88 4.57 30.60 0.14 -3.74 16 28 H 0.04 0.94 7.67 -2.38 -0.02 0.92 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.20 6.62 -2.39 -0.02 1.18 16 31 H 0.09 1.45 8.05 -2.39 -0.02 1.43 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.03 1.30 7.61 -2.38 -0.02 1.28 16 36 H 0.09 2.19 7.67 -2.39 -0.02 2.17 16 37 H 0.07 1.26 6.69 -2.39 -0.02 1.24 16 38 H 0.09 1.32 7.63 -2.39 -0.02 1.30 16 39 H 0.06 1.13 7.55 -2.39 -0.02 1.12 16 40 H 0.40 12.86 6.76 -92.71 -0.63 12.24 16 41 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.02 0.91 7.55 -2.38 -0.02 0.89 16 43 H 0.37 14.38 4.35 -92.70 -0.40 13.98 16 44 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.07 1.58 7.26 -2.39 -0.02 1.57 16 46 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.05 1.27 6.85 -2.39 -0.02 1.25 16 49 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 51 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 52 H 0.04 1.63 7.60 -2.39 -0.02 1.61 16 53 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 54 H 0.03 1.17 7.19 -2.39 -0.02 1.16 16 Total: -1.00 -71.98 394.57 3.29 -68.69 By element: Atomic # 1 Polarization: 45.40 SS G_CDS: -0.22 Total: 45.18 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 4.60 Total: -13.04 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -2.94 Total: -120.07 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.05 Total: -26.04 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.91 Total: 45.28 kcal Total: -71.98 3.29 -68.69 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115715282.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.186 kcal (2) G-P(sol) polarization free energy of solvation -71.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds