Wall clock time and date at job start Tue Mar 31 2020 15:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.01857 * 2 1 4 4 C 1.54269 * 110.03423 * 121.44186 * 2 1 3 5 5 C 1.54890 * 104.19415 * 142.89351 * 4 2 1 6 6 C 1.54888 * 102.74850 * 322.05410 * 5 4 2 7 7 C 1.53877 * 110.02882 * 238.60660 * 2 1 3 8 8 C 1.53003 * 110.02689 * 121.38194 * 7 2 1 9 9 C 1.50697 * 110.03615 * 0.02562 * 7 2 1 10 10 O 1.21277 * 119.99898 * 112.96786 * 9 7 2 11 11 N 1.34772 * 119.99963 * 292.97717 * 9 7 2 12 12 C 1.46501 * 120.00262 * 175.76619 * 11 9 7 13 13 C 1.52997 * 109.47291 * 174.36972 * 12 11 9 14 14 N 1.46500 * 109.47206 * 57.06763 * 13 12 11 15 15 C 1.36946 * 119.99709 * 61.63991 * 14 13 12 16 16 H 1.07998 * 119.99764 * 0.62629 * 15 14 13 17 17 C 1.38814 * 119.99770 * 180.63133 * 15 14 13 18 18 N 1.31615 * 120.00235 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99462 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47474 * 59.99907 * 19 17 15 21 21 H 1.48507 * 109.46503 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47315 * 299.99276 * 19 17 15 23 23 C 1.52996 * 109.47330 * 297.07204 * 13 12 11 24 24 C 1.53005 * 109.47547 * 180.02562 * 23 13 12 25 25 C 1.53003 * 109.46979 * 59.99531 * 24 23 13 26 26 C 1.52996 * 109.47364 * 300.00581 * 25 24 23 27 27 C 1.52997 * 109.47330 * 59.99832 * 26 25 24 28 28 H 1.09005 * 109.46826 * 187.42421 * 1 2 3 29 29 H 1.08999 * 109.46940 * 307.42189 * 1 2 3 30 30 H 1.08995 * 109.47107 * 67.42681 * 1 2 3 31 31 H 1.08990 * 110.48700 * 261.57461 * 4 2 1 32 32 H 1.09002 * 110.48594 * 24.08247 * 4 2 1 33 33 H 1.08997 * 110.75322 * 80.37700 * 5 4 2 34 34 H 1.09004 * 110.75134 * 203.56097 * 5 4 2 35 35 H 1.08993 * 110.49127 * 279.26335 * 6 5 4 36 36 H 1.09008 * 110.48151 * 156.61920 * 6 5 4 37 37 H 1.08999 * 109.47702 * 299.30735 * 8 7 2 38 38 H 1.08996 * 109.47329 * 59.31328 * 8 7 2 39 39 H 1.09005 * 109.46801 * 179.30935 * 8 7 2 40 40 H 0.97007 * 119.99936 * 355.76600 * 11 9 7 41 41 H 1.08999 * 109.46715 * 54.37395 * 12 11 9 42 42 H 1.09001 * 109.46844 * 294.37158 * 12 11 9 43 43 H 0.96994 * 120.00588 * 241.64081 * 14 13 12 44 44 H 0.96992 * 120.00051 * 180.02562 * 18 17 15 45 45 H 1.08997 * 109.47729 * 59.99800 * 23 13 12 46 46 H 1.09003 * 109.47251 * 299.99956 * 23 13 12 47 47 H 1.08999 * 109.47446 * 180.02562 * 24 23 13 48 48 H 1.09003 * 109.46756 * 300.00195 * 24 23 13 49 49 H 1.09001 * 109.46791 * 60.00162 * 25 24 23 50 50 H 1.08996 * 109.46974 * 180.02562 * 25 24 23 51 51 H 1.09007 * 109.46953 * 300.00272 * 26 25 24 52 52 H 1.08998 * 109.47253 * 180.02562 * 26 25 24 53 53 H 1.09003 * 109.47695 * 180.02562 * 27 26 25 54 54 H 1.09001 * 109.47389 * 60.00074 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0585 -0.7560 1.2365 5 6 3.3138 -1.5010 0.7184 6 6 2.8874 -1.9404 -0.7044 7 6 2.0571 -0.7531 -1.2341 8 6 2.9398 0.1716 -2.0747 9 6 0.9038 -1.2578 -2.0624 10 8 0.7039 -0.7988 -3.1670 11 7 0.0943 -2.2191 -1.5755 12 6 -1.0805 -2.6444 -2.3405 13 6 -1.7424 -3.8328 -1.6402 14 7 -2.0918 -3.4581 -0.2678 15 6 -2.9794 -2.4402 -0.0408 16 1 -3.4293 -1.9204 -0.8737 17 6 -3.3005 -2.0765 1.2598 18 7 -2.7525 -2.7102 2.2748 19 14 -4.5106 -0.6874 1.5692 20 1 -5.8205 -1.0266 0.9577 21 1 -4.6821 -0.4972 3.0320 22 1 -3.9914 0.5654 0.9643 23 6 -0.7715 -5.0149 -1.6145 24 6 -1.4336 -6.2037 -0.9148 25 6 -2.7011 -6.6010 -1.6740 26 6 -3.6720 -5.4189 -1.6998 27 6 -3.0099 -4.2303 -2.3995 28 1 -0.3633 -1.0191 0.1328 29 1 -0.3633 0.6245 0.8162 30 1 -0.3633 0.3945 -0.9489 31 1 2.3298 -0.0546 2.0254 32 1 1.3134 -1.4650 1.5974 33 1 4.1710 -0.8293 0.6747 34 1 3.5345 -2.3666 1.3431 35 1 2.2772 -2.8423 -0.6584 36 1 3.7637 -2.1031 -1.3319 37 1 2.3532 1.0259 -2.4125 38 1 3.7774 0.5217 -1.4714 39 1 3.3179 -0.3741 -2.9393 40 1 0.2897 -2.6296 -0.7185 41 1 -0.7734 -2.9390 -3.3440 42 1 -1.7901 -1.8194 -2.4051 43 1 -1.6947 -3.9310 0.4802 44 1 -2.9772 -2.4563 3.1835 45 1 0.1317 -4.7318 -1.0741 46 1 -0.5114 -5.2938 -2.6357 47 1 -0.7417 -7.0457 -0.8961 48 1 -1.6940 -5.9251 0.1063 49 1 -2.4406 -6.8795 -2.6952 50 1 -3.1730 -7.4476 -1.1753 51 1 -3.9323 -5.1403 -0.6786 52 1 -4.5751 -5.7021 -2.2402 53 1 -3.7014 -3.3878 -2.4174 54 1 -2.7494 -4.5087 -3.4206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115715283.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:33 Heat of formation + Delta-G solvation = -70.039810 kcal Electronic energy + Delta-G solvation = -30934.711348 eV Core-core repulsion = 27290.538701 eV Total energy + Delta-G solvation = -3644.172648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.80496 -40.18336 -38.43276 -35.89336 -35.00747 -32.81609 -32.27839 -31.99793 -31.54561 -30.23793 -27.59989 -26.40345 -25.65372 -24.92553 -23.50912 -22.60314 -21.76662 -21.36800 -20.19901 -19.63659 -18.93990 -17.58529 -17.04936 -16.82046 -16.39671 -16.02256 -15.85321 -15.52118 -15.38412 -15.15051 -14.92508 -14.64081 -14.31070 -14.27627 -13.75195 -13.59538 -13.38684 -13.37553 -13.25912 -13.09175 -12.94865 -12.89523 -12.79211 -12.59463 -12.55373 -12.40782 -12.06799 -11.89075 -11.85630 -11.66062 -11.64249 -11.51113 -11.45385 -11.36121 -11.24248 -11.10342 -10.79153 -10.69367 -10.49581 -9.72335 -8.86790 -7.83311 -5.05891 1.43512 1.46680 1.49286 1.76719 2.43810 2.60587 3.49597 3.59255 3.62529 3.66525 3.83022 3.94146 4.03568 4.13650 4.17220 4.33868 4.35420 4.41502 4.42052 4.49446 4.51977 4.61584 4.67985 4.69109 4.76754 4.78289 4.81952 4.87790 4.91040 4.94010 4.97166 5.00867 5.05837 5.08603 5.15544 5.17798 5.19729 5.22544 5.29935 5.34092 5.36204 5.46628 5.47707 5.49951 5.52029 5.58018 5.61020 5.64751 5.74755 5.80986 6.38391 6.75845 7.40582 7.48930 8.20215 8.47722 9.38479 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010277 B = 0.006033 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.792178 B = 4640.315141 C = 5976.494546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.075 4.075 3 H 0.086 0.914 4 C -0.120 4.120 5 C -0.110 4.110 6 C -0.111 4.111 7 C -0.079 4.079 8 C -0.116 4.116 9 C 0.521 3.479 10 O -0.598 6.598 11 N -0.695 5.695 12 C 0.122 3.878 13 C 0.192 3.808 14 N -0.706 5.706 15 C -0.201 4.201 16 H 0.057 0.943 17 C -0.051 4.051 18 N -0.952 5.952 19 Si 0.933 3.067 20 H -0.290 1.290 21 H -0.299 1.299 22 H -0.293 1.293 23 C -0.107 4.107 24 C -0.111 4.111 25 C -0.107 4.107 26 C -0.105 4.105 27 C -0.115 4.115 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.024 0.976 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.042 0.958 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.406 0.594 41 H 0.060 0.940 42 H 0.027 0.973 43 H 0.378 0.622 44 H 0.245 0.755 45 H 0.059 0.941 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.045 0.955 49 H 0.072 0.928 50 H 0.060 0.940 51 H 0.043 0.957 52 H 0.056 0.944 53 H 0.037 0.963 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.531 -3.815 -5.284 14.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 H 0.105 0.895 4 C -0.158 4.158 5 C -0.147 4.147 6 C -0.149 4.149 7 C -0.082 4.082 8 C -0.174 4.174 9 C 0.309 3.691 10 O -0.480 6.480 11 N -0.345 5.345 12 C -0.005 4.005 13 C 0.101 3.899 14 N -0.346 5.346 15 C -0.333 4.333 16 H 0.075 0.925 17 C -0.245 4.245 18 N -0.604 5.604 19 Si 0.765 3.235 20 H -0.217 1.217 21 H -0.226 1.226 22 H -0.220 1.220 23 C -0.145 4.145 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.143 4.143 27 C -0.154 4.154 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.243 0.757 41 H 0.078 0.922 42 H 0.046 0.954 43 H 0.212 0.788 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.064 0.936 49 H 0.090 0.910 50 H 0.079 0.921 51 H 0.062 0.938 52 H 0.074 0.926 53 H 0.056 0.944 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.232 -3.372 -6.058 14.061 hybrid contribution -1.497 1.052 0.996 2.083 sum 10.736 -2.320 -5.062 12.094 Atomic orbital electron populations 1.22128 0.96074 1.03403 0.99200 1.21787 0.94231 0.99860 0.93466 0.89535 1.22466 0.97805 0.99152 0.96375 1.22453 0.97169 1.00544 0.94573 1.22527 0.99394 0.95302 0.97693 1.21585 0.93449 0.97922 0.95289 1.21636 0.98635 0.98097 0.99021 1.20922 0.83849 0.78352 0.86006 1.90601 1.74903 1.59683 1.22776 1.45929 1.25741 1.39092 1.23735 1.21686 0.86704 0.97665 0.94417 1.19979 0.93191 0.91277 0.85480 1.42425 1.51375 1.39400 1.01424 1.19033 1.15750 1.07906 0.90636 0.92547 1.24932 1.02255 1.01284 0.95983 1.69700 1.48511 1.44684 0.97474 0.85836 0.80434 0.81263 0.75924 1.21673 1.22561 1.21987 1.21641 0.97141 0.94192 1.01477 1.21432 0.97096 0.97367 0.98994 1.21444 0.95498 0.96899 1.00616 1.21295 0.97778 0.94967 1.00243 1.21788 0.97347 0.97799 0.98510 0.90872 0.93980 0.95709 0.90471 0.92790 0.89449 0.90100 0.91831 0.89210 0.93867 0.89360 0.92534 0.75654 0.92203 0.95439 0.78788 0.94546 0.92184 0.90222 0.90696 0.93617 0.90976 0.92118 0.93838 0.92564 0.94441 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.58 7.86 71.98 0.57 -5.02 16 2 C -0.07 -2.09 3.16 -10.07 -0.03 -2.12 16 3 H 0.09 2.20 7.67 -2.39 -0.02 2.18 16 4 C -0.12 -2.95 6.36 31.67 0.20 -2.75 16 5 C -0.11 -2.04 6.91 31.89 0.22 -1.82 16 6 C -0.11 -2.38 5.78 31.67 0.18 -2.20 16 7 C -0.08 -2.15 0.83 -52.20 -0.04 -2.20 16 8 C -0.12 -2.83 7.48 71.98 0.54 -2.29 16 9 C 0.52 18.26 4.67 87.66 0.41 18.67 16 10 O -0.60 -25.16 16.01 -3.02 -0.05 -25.21 16 11 N -0.69 -23.87 3.06 -463.08 -1.42 -25.29 16 12 C 0.12 4.44 4.42 86.38 0.38 4.83 16 13 C 0.19 6.57 0.40 3.60 0.00 6.58 16 14 N -0.71 -29.85 3.52 -303.34 -1.07 -30.92 16 15 C -0.20 -10.01 8.70 84.03 0.73 -9.27 16 16 H 0.06 2.92 6.71 -2.91 -0.02 2.90 16 17 C -0.05 -2.74 5.50 84.86 0.47 -2.27 16 18 N -0.95 -53.02 13.06 21.65 0.28 -52.74 16 19 Si 0.93 45.51 29.55 68.60 2.03 47.54 16 20 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 21 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 22 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 23 C -0.11 -2.97 4.63 30.59 0.14 -2.83 16 24 C -0.11 -3.02 5.75 30.60 0.18 -2.85 16 25 C -0.11 -2.79 5.92 30.59 0.18 -2.61 16 26 C -0.11 -3.37 5.77 30.59 0.18 -3.19 16 27 C -0.11 -3.82 4.54 30.59 0.14 -3.68 16 28 H 0.07 3.03 5.66 -2.38 -0.01 3.01 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.02 0.99 7.17 -2.39 -0.02 0.97 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.60 7.74 -2.39 -0.02 1.58 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.35 8.14 -2.38 -0.02 1.34 16 35 H 0.06 1.46 6.58 -2.39 -0.02 1.44 16 36 H 0.09 1.60 7.84 -2.38 -0.02 1.58 16 37 H 0.04 1.19 8.05 -2.39 -0.02 1.17 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.37 8.14 -2.38 -0.02 1.36 16 40 H 0.41 13.68 5.38 -92.70 -0.50 13.18 16 41 H 0.06 2.09 8.09 -2.39 -0.02 2.07 16 42 H 0.03 1.18 7.48 -2.39 -0.02 1.16 16 43 H 0.38 17.28 6.57 -92.71 -0.61 16.67 16 44 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 45 H 0.06 1.65 7.17 -2.39 -0.02 1.63 16 46 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.05 1.51 6.90 -2.39 -0.02 1.50 16 49 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.04 1.73 7.61 -2.38 -0.02 1.71 16 52 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 53 H 0.04 1.42 7.17 -2.39 -0.02 1.41 16 54 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -60.62 395.00 3.98 -56.64 By element: Atomic # 1 Polarization: 45.25 SS G_CDS: -0.24 Total: 45.01 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 4.44 Total: -15.03 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -2.20 Total: -108.95 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -60.62 3.98 -56.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115715283.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.397 kcal (2) G-P(sol) polarization free energy of solvation -60.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds