Wall clock time and date at job start Tue Mar 31 2020 15:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.43023 * 2 1 4 4 C 1.54882 * 110.48669 * 122.53945 * 2 1 3 5 5 C 1.54888 * 102.75005 * 156.75174 * 4 2 1 6 6 C 1.54265 * 104.31416 * 321.99545 * 5 4 2 7 7 C 1.54225 * 106.42848 * 23.63818 * 6 5 4 8 8 C 1.52998 * 110.04660 * 240.67168 * 7 6 5 9 9 C 1.50703 * 110.02371 * 119.28251 * 7 6 5 10 10 O 1.21282 * 119.99687 * 242.79202 * 9 7 6 11 11 N 1.34776 * 119.99734 * 62.79627 * 9 7 6 12 12 C 1.46507 * 119.99638 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46748 * 176.62983 * 12 11 9 14 14 N 1.46504 * 109.47077 * 54.63386 * 13 12 11 15 15 C 1.36930 * 120.00023 * 62.79728 * 14 13 12 16 16 H 1.08000 * 120.00703 * 354.25241 * 15 14 13 17 17 C 1.38817 * 119.99980 * 174.23947 * 15 14 13 18 18 N 1.31621 * 119.99754 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00096 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46648 * 90.00792 * 19 17 15 21 21 H 1.48505 * 109.47182 * 210.00135 * 19 17 15 22 22 H 1.48492 * 109.47439 * 330.00627 * 19 17 15 23 23 C 1.53000 * 109.47285 * 294.63044 * 13 12 11 24 24 C 1.52999 * 109.46919 * 180.02562 * 23 13 12 25 25 C 1.52999 * 109.47382 * 60.00164 * 24 23 13 26 26 C 1.53002 * 109.46706 * 300.00088 * 25 24 23 27 27 C 1.52999 * 109.46708 * 174.62812 * 13 12 11 28 28 H 1.08998 * 109.47137 * 298.91425 * 1 2 3 29 29 H 1.09003 * 109.47099 * 58.91145 * 1 2 3 30 30 H 1.08994 * 109.47079 * 178.91352 * 1 2 3 31 31 H 1.09007 * 110.75391 * 38.43886 * 4 2 1 32 32 H 1.08994 * 110.92064 * 275.14403 * 4 2 1 33 33 H 1.08998 * 110.48723 * 80.73728 * 5 4 2 34 34 H 1.08999 * 110.49014 * 203.24782 * 5 4 2 35 35 H 1.09003 * 110.03732 * 142.95352 * 6 5 4 36 36 H 1.08999 * 110.03325 * 264.39151 * 6 5 4 37 37 H 1.08993 * 109.47289 * 177.21697 * 8 7 6 38 38 H 1.09003 * 109.46675 * 297.21512 * 8 7 6 39 39 H 1.08998 * 109.47327 * 57.21417 * 8 7 6 40 40 H 0.97001 * 120.00106 * 359.97438 * 11 9 7 41 41 H 1.09000 * 109.46907 * 296.63087 * 12 11 9 42 42 H 1.08994 * 109.47002 * 56.63176 * 12 11 9 43 43 H 0.97002 * 119.99711 * 242.80590 * 14 13 12 44 44 H 0.97000 * 119.99946 * 179.97438 * 18 17 15 45 45 H 1.08992 * 109.47010 * 300.00106 * 23 13 12 46 46 H 1.09000 * 109.46807 * 60.00244 * 23 13 12 47 47 H 1.09001 * 109.47256 * 299.99682 * 24 23 13 48 48 H 1.09003 * 109.46831 * 179.97438 * 24 23 13 49 49 H 1.08998 * 109.47743 * 179.97438 * 25 24 23 50 50 H 1.09003 * 109.46975 * 59.99146 * 25 24 23 51 51 H 1.08995 * 109.47397 * 299.99508 * 26 25 24 52 52 H 1.09006 * 109.46990 * 179.97438 * 26 25 24 53 53 H 1.08994 * 109.47236 * 300.00035 * 27 13 12 54 54 H 1.09004 * 109.46919 * 60.00527 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0721 -0.7804 1.2231 5 6 3.4920 -1.1940 0.7628 6 6 3.3230 -1.5399 -0.7311 7 6 2.0727 -0.7783 -1.2164 8 6 1.0186 -1.7669 -1.7187 9 6 2.4473 0.1801 -2.3173 10 8 2.2998 1.3735 -2.1586 11 7 2.9461 -0.2888 -3.4782 12 6 3.3098 0.6430 -4.5487 13 6 3.9239 -0.1345 -5.7146 14 7 3.0003 -1.1899 -6.1382 15 6 1.7673 -0.8618 -6.6352 16 1 1.4388 0.1669 -6.6291 17 6 0.9395 -1.8516 -7.1472 18 7 1.3398 -3.1055 -7.1544 19 14 -0.7423 -1.4040 -7.8259 20 1 -0.6261 -1.0990 -9.2746 21 1 -1.6734 -2.5448 -7.6334 22 1 -1.2642 -0.2127 -7.1095 23 6 5.2460 -0.7623 -5.2689 24 6 5.8604 -1.5392 -6.4351 25 6 6.1170 -0.5860 -7.6040 26 6 4.7948 0.0418 -8.0497 27 6 4.1803 0.8183 -6.8840 28 1 -0.3633 0.4969 0.8995 29 1 -0.3633 0.5307 -0.8801 30 1 -0.3633 -1.0274 -0.0195 31 1 1.4594 -1.6595 1.4229 32 1 2.1228 -0.1389 2.1028 33 1 4.1894 -0.3655 0.8860 34 1 3.8347 -2.0660 1.3198 35 1 4.2004 -1.2161 -1.2910 36 1 3.1776 -2.6134 -0.8517 37 1 0.1212 -1.2229 -2.0130 38 1 1.4113 -2.3115 -2.5775 39 1 0.7725 -2.4708 -0.9237 40 1 3.0643 -1.2432 -3.6050 41 1 2.4183 1.1682 -4.8916 42 1 4.0342 1.3647 -4.1716 43 1 3.2623 -2.1211 -6.0664 44 1 0.7612 -3.7972 -7.5119 45 1 5.9331 0.0230 -4.9538 46 1 5.0633 -1.4410 -4.4358 47 1 5.1735 -2.3245 -6.7505 48 1 6.8026 -1.9861 -6.1176 49 1 6.5551 -1.1393 -8.4347 50 1 6.8039 0.1993 -7.2885 51 1 4.1078 -0.7433 -8.3652 52 1 4.9776 0.7213 -8.8823 53 1 3.2384 1.2655 -7.2015 54 1 4.8675 1.6036 -6.5689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115715284.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:37 Heat of formation + Delta-G solvation = -78.499610 kcal Electronic energy + Delta-G solvation = -30125.851515 eV Core-core repulsion = 26481.312023 eV Total energy + Delta-G solvation = -3644.539492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.61241 -40.25387 -38.48516 -35.88502 -35.07014 -33.04731 -32.54320 -31.73821 -31.52855 -30.12976 -27.05200 -26.52410 -25.78412 -25.67302 -23.51688 -22.52938 -21.77056 -21.22732 -19.94931 -19.46326 -18.96852 -18.02272 -17.06067 -16.69139 -16.33307 -16.11066 -15.85146 -15.53648 -15.25855 -15.10236 -15.02684 -14.81984 -14.54609 -14.31524 -14.05989 -13.63876 -13.40959 -13.38797 -13.24022 -13.08501 -12.91668 -12.83007 -12.65412 -12.59693 -12.51019 -12.30191 -12.06470 -11.91921 -11.88638 -11.71951 -11.68028 -11.48267 -11.38192 -11.32615 -11.31350 -11.09302 -10.80722 -10.70785 -10.49730 -9.85788 -8.89838 -7.87349 -5.11194 1.42851 1.46209 1.51006 1.75255 2.40772 2.58743 3.45242 3.48166 3.63484 3.79020 3.81319 3.92930 4.01619 4.13062 4.18204 4.28462 4.38836 4.39285 4.44094 4.47894 4.56044 4.63606 4.64546 4.66607 4.75080 4.76103 4.81007 4.85089 4.89287 4.93190 4.97162 4.98407 5.00498 5.06600 5.11042 5.17672 5.18811 5.21363 5.25086 5.31947 5.37970 5.45464 5.46290 5.49284 5.50840 5.56763 5.60306 5.62158 5.72286 5.80717 6.35615 6.73098 7.37327 7.44750 8.16901 8.43985 9.34905 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.004822 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.383502 B = 5805.460660 C = 7266.117050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 H 0.064 0.936 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.111 4.111 7 C -0.076 4.076 8 C -0.133 4.133 9 C 0.513 3.487 10 O -0.594 6.594 11 N -0.695 5.695 12 C 0.122 3.878 13 C 0.190 3.810 14 N -0.706 5.706 15 C -0.205 4.205 16 H 0.057 0.943 17 C -0.059 4.059 18 N -0.957 5.957 19 Si 0.943 3.057 20 H -0.293 1.293 21 H -0.298 1.298 22 H -0.285 1.285 23 C -0.106 4.106 24 C -0.112 4.112 25 C -0.107 4.107 26 C -0.105 4.105 27 C -0.113 4.113 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.405 0.595 41 H 0.026 0.974 42 H 0.061 0.939 43 H 0.377 0.623 44 H 0.247 0.753 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.044 0.956 48 H 0.075 0.925 49 H 0.059 0.941 50 H 0.073 0.927 51 H 0.041 0.959 52 H 0.056 0.944 53 H 0.036 0.964 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.651 1.423 13.392 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.100 4.100 3 H 0.082 0.918 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.149 4.149 7 C -0.079 4.079 8 C -0.190 4.190 9 C 0.300 3.700 10 O -0.476 6.476 11 N -0.344 5.344 12 C -0.005 4.005 13 C 0.099 3.901 14 N -0.347 5.347 15 C -0.337 4.337 16 H 0.075 0.925 17 C -0.252 4.252 18 N -0.609 5.609 19 Si 0.775 3.225 20 H -0.221 1.221 21 H -0.225 1.225 22 H -0.211 1.211 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.143 4.143 27 C -0.153 4.153 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.242 0.758 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.211 0.789 44 H 0.056 0.944 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.094 0.906 49 H 0.078 0.922 50 H 0.091 0.909 51 H 0.060 0.940 52 H 0.075 0.925 53 H 0.055 0.945 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.414 2.346 13.398 15.994 hybrid contribution -1.495 -0.262 -1.222 1.949 sum 6.919 2.084 12.177 14.159 Atomic orbital electron populations 1.21848 0.94734 1.02353 1.00928 1.21887 0.95941 0.98935 0.93201 0.91787 1.22544 0.96019 1.00005 0.96255 1.22322 0.97191 1.01777 0.94313 1.22330 0.94735 1.00588 0.97267 1.21534 0.98036 0.94959 0.93378 1.21922 0.97407 0.98094 1.01591 1.21138 0.75771 0.89209 0.83865 1.90590 1.56384 1.18555 1.82081 1.45775 1.63573 1.11173 1.13909 1.21702 0.98162 0.92111 0.88482 1.20009 0.89759 0.89284 0.91011 1.42427 1.13420 1.03965 1.74886 1.19131 0.92796 0.92443 1.29353 0.92478 1.25089 1.00822 0.95723 1.03559 1.69738 1.37630 0.99579 1.53904 0.85603 0.82326 0.76329 0.78259 1.22124 1.22496 1.21147 1.21644 0.94951 0.99902 0.97914 1.21432 1.00207 0.97960 0.95319 1.21446 0.96439 0.98753 0.97820 1.21288 0.96994 0.99056 0.96984 1.21764 0.99491 0.97735 0.96328 0.91493 0.95295 0.90930 0.89916 0.90469 0.92142 0.89295 0.92128 0.89250 0.93566 0.93070 0.89001 0.75820 0.95530 0.92048 0.78865 0.94432 0.90077 0.92034 0.93727 0.90624 0.92181 0.90852 0.94010 0.92545 0.94492 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.00 71.98 0.58 -2.82 16 2 C -0.08 -2.03 2.69 -9.72 -0.03 -2.06 16 3 H 0.06 1.97 6.88 -2.39 -0.02 1.95 16 4 C -0.11 -1.97 6.33 31.88 0.20 -1.77 16 5 C -0.12 -2.06 6.82 31.67 0.22 -1.85 16 6 C -0.11 -2.37 6.08 31.44 0.19 -2.18 16 7 C -0.08 -2.06 0.71 -52.08 -0.04 -2.09 16 8 C -0.13 -3.58 6.88 71.98 0.50 -3.09 16 9 C 0.51 18.20 6.28 87.66 0.55 18.75 16 10 O -0.59 -25.31 15.40 -3.04 -0.05 -25.35 16 11 N -0.70 -24.27 4.88 -463.05 -2.26 -26.53 16 12 C 0.12 4.50 4.37 86.38 0.38 4.88 16 13 C 0.19 6.65 0.41 3.60 0.00 6.65 16 14 N -0.71 -30.68 3.40 -303.34 -1.03 -31.71 16 15 C -0.20 -10.47 8.70 84.04 0.73 -9.74 16 16 H 0.06 3.03 6.77 -2.91 -0.02 3.01 16 17 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 18 N -0.96 -54.59 13.07 21.65 0.28 -54.31 16 19 Si 0.94 45.99 29.55 68.60 2.03 48.02 16 20 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 21 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 C -0.11 -2.99 4.65 30.59 0.14 -2.85 16 24 C -0.11 -3.10 5.75 30.59 0.18 -2.93 16 25 C -0.11 -2.87 5.92 30.59 0.18 -2.69 16 26 C -0.11 -3.48 5.76 30.58 0.18 -3.30 16 27 C -0.11 -3.86 4.51 30.58 0.14 -3.72 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.03 0.83 7.85 -2.39 -0.02 0.81 16 30 H 0.07 1.52 6.41 -2.39 -0.02 1.50 16 31 H 0.08 1.25 8.06 -2.38 -0.02 1.23 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.37 7.64 -2.39 -0.02 1.35 16 36 H 0.09 1.65 7.68 -2.39 -0.02 1.64 16 37 H 0.05 1.40 6.72 -2.39 -0.02 1.38 16 38 H 0.05 1.52 7.50 -2.39 -0.02 1.51 16 39 H 0.09 1.92 7.65 -2.39 -0.02 1.91 16 40 H 0.41 13.72 6.74 -92.71 -0.63 13.10 16 41 H 0.03 1.16 7.50 -2.39 -0.02 1.14 16 42 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.38 17.64 6.63 -92.71 -0.61 17.03 16 44 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 45 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.06 1.69 7.28 -2.39 -0.02 1.67 16 47 H 0.04 1.52 6.92 -2.39 -0.02 1.51 16 48 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.04 1.73 7.61 -2.39 -0.02 1.71 16 52 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 53 H 0.04 1.43 7.23 -2.39 -0.02 1.42 16 54 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -62.88 397.92 3.16 -59.72 By element: Atomic # 1 Polarization: 44.11 SS G_CDS: -0.37 Total: 43.74 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 4.56 Total: -13.57 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -3.01 Total: -112.55 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.05 Total: -25.35 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -62.88 3.16 -59.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115715284.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.781 kcal (2) G-P(sol) polarization free energy of solvation -62.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds