Wall clock time and date at job start Tue Mar 31 2020 15:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 110.05583 * 2 1 4 4 C 1.54264 * 110.03329 * 238.58271 * 2 1 3 5 5 C 1.54887 * 104.19758 * 264.32281 * 4 2 1 6 6 C 1.54888 * 102.74774 * 322.06052 * 5 4 2 7 7 C 1.53875 * 110.03314 * 121.41344 * 2 1 3 8 8 C 1.52991 * 110.03565 * 238.61969 * 7 2 1 9 9 C 1.50703 * 110.03018 * 0.02562 * 7 2 1 10 10 O 1.21278 * 120.00110 * 112.70006 * 9 7 2 11 11 N 1.34778 * 119.99926 * 292.70238 * 9 7 2 12 12 C 1.46500 * 120.00051 * 175.47755 * 11 9 7 13 13 C 1.52999 * 109.47050 * 179.40139 * 12 11 9 14 14 N 1.46494 * 109.47274 * 304.29909 * 13 12 11 15 15 C 1.36933 * 120.00307 * 298.30754 * 14 13 12 16 16 H 1.08006 * 119.99345 * 4.77958 * 15 14 13 17 17 C 1.38809 * 120.00500 * 184.78311 * 15 14 13 18 18 N 1.31619 * 119.99973 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 120.00221 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46983 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47301 * 119.99840 * 19 17 15 22 22 H 1.48496 * 109.47032 * 240.00084 * 19 17 15 23 23 C 1.53004 * 109.46957 * 64.29679 * 13 12 11 24 24 C 1.52996 * 109.46998 * 179.97438 * 23 13 12 25 25 C 1.52997 * 109.47547 * 300.00482 * 24 23 13 26 26 C 1.52997 * 109.47167 * 59.99551 * 25 24 23 27 27 C 1.52996 * 109.47002 * 184.29467 * 13 12 11 28 28 H 1.08992 * 109.46672 * 304.58243 * 1 2 3 29 29 H 1.09001 * 109.46770 * 64.57712 * 1 2 3 30 30 H 1.08995 * 109.47029 * 184.57844 * 1 2 3 31 31 H 1.08999 * 110.48437 * 23.00541 * 4 2 1 32 32 H 1.09000 * 110.48623 * 145.51367 * 4 2 1 33 33 H 1.09001 * 110.75483 * 80.37134 * 5 4 2 34 34 H 1.08998 * 110.75961 * 203.55608 * 5 4 2 35 35 H 1.08998 * 110.48739 * 279.26124 * 6 5 4 36 36 H 1.08997 * 110.48590 * 156.61899 * 6 5 4 37 37 H 1.09002 * 109.47562 * 180.69201 * 8 7 2 38 38 H 1.09001 * 109.47561 * 300.69159 * 8 7 2 39 39 H 1.09003 * 109.47229 * 60.69240 * 8 7 2 40 40 H 0.97001 * 119.99898 * 355.47304 * 11 9 7 41 41 H 1.08994 * 109.47098 * 59.40078 * 12 11 9 42 42 H 1.08996 * 109.46980 * 299.40036 * 12 11 9 43 43 H 0.97008 * 120.00298 * 118.30466 * 14 13 12 44 44 H 0.97001 * 119.99947 * 179.97438 * 18 17 15 45 45 H 1.08999 * 109.46944 * 60.00314 * 23 13 12 46 46 H 1.08997 * 109.47453 * 299.99834 * 23 13 12 47 47 H 1.09007 * 109.47376 * 179.97438 * 24 23 13 48 48 H 1.09002 * 109.47364 * 60.00226 * 24 23 13 49 49 H 1.09001 * 109.47340 * 179.97438 * 25 24 23 50 50 H 1.09003 * 109.46696 * 299.99683 * 25 24 23 51 51 H 1.09002 * 109.46820 * 60.00822 * 26 25 24 52 52 H 1.09007 * 109.47070 * 179.97438 * 26 25 24 53 53 H 1.08999 * 109.47701 * 300.00177 * 27 13 12 54 54 H 1.09000 * 109.46960 * 60.00528 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0240 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 2.3282 -2.1901 -0.7191 6 6 2.8875 -1.9406 0.7035 7 6 2.0572 -0.7535 1.2338 8 6 2.9399 0.1707 2.0748 9 6 0.9038 -1.2596 2.0612 10 8 0.7010 -2.4517 2.1538 11 7 0.0977 -0.3874 2.6983 12 6 -1.0808 -0.8725 3.4209 13 6 -1.8091 0.3108 4.0615 14 7 -0.8790 1.0511 4.9177 15 6 -0.3004 0.4339 5.9944 16 1 -0.4687 -0.6187 6.1681 17 6 0.5023 1.1611 6.8626 18 7 0.7077 2.4437 6.6506 19 14 1.2911 0.3192 8.3319 20 1 0.9060 -1.1150 8.3462 21 1 2.7684 0.4346 8.2343 22 1 0.8254 0.9687 9.5834 23 6 -2.3403 1.2367 2.9654 24 6 -3.0691 2.4196 3.6060 25 6 -4.2375 1.9035 4.4482 26 6 -3.7062 0.9776 5.5442 27 6 -2.9774 -0.2050 4.9039 28 1 -0.3632 0.5833 0.8460 29 1 -0.3633 0.4412 -0.9282 30 1 -0.3633 -1.0243 0.0820 31 1 1.3062 -0.7696 -2.0254 32 1 2.9799 -0.2986 -1.5980 33 1 1.4032 -2.7651 -0.6751 34 1 3.0652 -2.6942 -1.3442 35 1 3.9440 -1.6765 0.6572 36 1 2.7402 -2.8196 1.3310 37 1 3.3180 -0.3753 2.9391 38 1 3.7774 0.5212 1.4717 39 1 2.3532 1.0249 2.4129 40 1 0.2978 0.5615 2.6785 41 1 -0.7689 -1.5707 4.1975 42 1 -1.7507 -1.3781 2.7255 43 1 -0.6730 1.9786 4.7219 44 1 1.2684 2.9519 7.2575 45 1 -3.0323 0.6859 2.3284 46 1 -1.5080 1.6042 2.3652 47 1 -3.4472 3.0795 2.8251 48 1 -2.3775 2.9706 4.2433 49 1 -4.7564 2.7462 4.9049 50 1 -4.9292 1.3525 3.8108 51 1 -3.0146 1.5286 6.1815 52 1 -4.5386 0.6102 6.1445 53 1 -3.6695 -0.7558 4.2669 54 1 -2.5990 -0.8646 5.6848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115715285.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:41 Heat of formation + Delta-G solvation = -72.286947 kcal Electronic energy + Delta-G solvation = -30546.390516 eV Core-core repulsion = 26902.120426 eV Total energy + Delta-G solvation = -3644.270091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.81419 -40.21925 -38.27028 -35.91536 -35.11794 -33.10758 -32.37448 -31.71081 -31.54609 -30.14412 -27.32205 -26.65725 -25.69680 -25.06034 -23.55154 -22.82689 -21.66504 -21.21545 -20.11769 -19.67300 -18.99816 -17.57489 -17.05249 -16.76748 -16.38175 -16.23308 -15.98476 -15.56427 -15.32899 -15.14330 -14.92494 -14.34683 -14.28992 -14.14034 -13.99321 -13.58152 -13.48972 -13.40651 -13.26950 -13.19427 -13.13343 -12.90114 -12.85175 -12.60244 -12.49472 -12.28919 -12.03633 -11.88402 -11.81515 -11.68190 -11.66887 -11.53016 -11.40394 -11.35203 -11.29680 -11.08226 -10.78908 -10.68665 -10.49606 -9.74385 -8.89414 -7.87863 -5.11035 1.41113 1.45525 1.50882 1.80438 2.43346 2.58394 3.45235 3.52327 3.60112 3.74221 3.82234 3.93123 4.02541 4.13216 4.18721 4.33682 4.37632 4.40750 4.42642 4.49398 4.51832 4.62315 4.67365 4.67567 4.77068 4.77462 4.81975 4.84387 4.89697 4.93100 4.97207 5.01944 5.08643 5.09148 5.13338 5.17308 5.18210 5.21308 5.23772 5.31787 5.35011 5.47854 5.48053 5.50402 5.51251 5.54791 5.60787 5.62514 5.74631 5.81196 6.35533 6.76057 7.41717 7.44724 8.17520 8.43884 9.34666 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011425 B = 0.005126 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.177323 B = 5461.216565 C = 6906.121365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.080 4.080 3 H 0.097 0.903 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.109 4.109 7 C -0.080 4.080 8 C -0.135 4.135 9 C 0.523 3.477 10 O -0.596 6.596 11 N -0.694 5.694 12 C 0.123 3.877 13 C 0.190 3.810 14 N -0.706 5.706 15 C -0.202 4.202 16 H 0.057 0.943 17 C -0.061 4.061 18 N -0.958 5.958 19 Si 0.941 3.059 20 H -0.282 1.282 21 H -0.300 1.300 22 H -0.297 1.297 23 C -0.106 4.106 24 C -0.112 4.112 25 C -0.107 4.107 26 C -0.106 4.106 27 C -0.114 4.114 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.038 0.962 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.405 0.595 41 H 0.025 0.975 42 H 0.061 0.939 43 H 0.378 0.622 44 H 0.246 0.754 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.076 0.924 48 H 0.043 0.957 49 H 0.059 0.941 50 H 0.073 0.927 51 H 0.040 0.960 52 H 0.055 0.945 53 H 0.071 0.929 54 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.676 -0.914 -17.047 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.099 4.099 3 H 0.115 0.885 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.146 4.146 7 C -0.083 4.083 8 C -0.193 4.193 9 C 0.311 3.689 10 O -0.478 6.478 11 N -0.344 5.344 12 C -0.003 4.003 13 C 0.099 3.901 14 N -0.347 5.347 15 C -0.334 4.334 16 H 0.075 0.925 17 C -0.253 4.253 18 N -0.609 5.609 19 Si 0.774 3.226 20 H -0.207 1.207 21 H -0.228 1.228 22 H -0.225 1.225 23 C -0.144 4.144 24 C -0.150 4.150 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.154 4.154 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.242 0.758 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.211 0.789 44 H 0.055 0.945 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.062 0.938 49 H 0.078 0.922 50 H 0.092 0.908 51 H 0.059 0.941 52 H 0.074 0.926 53 H 0.089 0.911 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.820 -1.858 -16.836 17.171 hybrid contribution 0.823 -0.033 1.879 2.051 sum -1.997 -1.891 -14.957 15.208 Atomic orbital electron populations 1.22179 0.95041 1.00902 1.03030 1.21822 0.95820 0.99879 0.92359 0.88521 1.22433 1.01878 0.94271 0.96246 1.22426 1.00440 0.97621 0.95189 1.22361 0.99128 0.96130 0.97017 1.21564 0.93326 0.97638 0.95751 1.21880 0.99976 0.98241 0.99159 1.20866 0.83441 0.85736 0.78892 1.90595 1.74001 1.17862 1.65323 1.45885 1.26427 1.10741 1.51331 1.21667 0.86984 0.97449 0.94244 1.20012 0.88929 0.90604 0.90507 1.42434 1.50535 1.12066 1.29658 1.19168 1.20295 0.92696 1.01268 0.92528 1.25072 1.02999 0.96152 1.01113 1.69740 1.44416 1.06970 1.39805 0.85544 0.77882 0.77764 0.81434 1.20705 1.22754 1.22459 1.21668 0.99903 0.96462 0.96345 1.21438 0.97233 0.97293 0.99023 1.21443 0.97350 0.98660 0.96977 1.21290 0.98406 0.96616 0.98026 1.21774 0.97055 0.97672 0.98887 0.91959 0.90572 0.94746 0.90528 0.89541 0.93513 0.89870 0.89361 0.93128 0.94311 0.88916 0.92475 0.75774 0.95674 0.92080 0.78852 0.94469 0.89895 0.91838 0.90526 0.93810 0.92227 0.90798 0.94084 0.92592 0.91083 0.94675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 7.80 71.98 0.56 -2.82 16 2 C -0.08 -1.65 3.16 -10.07 -0.03 -1.69 16 3 H 0.10 1.71 7.67 -2.38 -0.02 1.69 16 4 C -0.11 -1.90 6.37 31.67 0.20 -1.70 16 5 C -0.12 -2.53 6.91 31.88 0.22 -2.31 16 6 C -0.11 -2.77 5.67 31.67 0.18 -2.59 16 7 C -0.08 -2.14 0.81 -52.21 -0.04 -2.19 16 8 C -0.14 -3.58 7.99 71.98 0.58 -3.01 16 9 C 0.52 18.34 4.64 87.66 0.41 18.75 16 10 O -0.60 -25.43 15.43 -3.02 -0.05 -25.47 16 11 N -0.69 -23.63 3.31 -463.07 -1.53 -25.16 16 12 C 0.12 4.47 4.37 86.38 0.38 4.85 16 13 C 0.19 6.56 0.40 3.60 0.00 6.56 16 14 N -0.71 -30.65 3.53 -303.36 -1.07 -31.72 16 15 C -0.20 -10.39 8.70 84.03 0.73 -9.66 16 16 H 0.06 3.04 6.75 -2.91 -0.02 3.02 16 17 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 18 N -0.96 -54.97 13.06 21.65 0.28 -54.69 16 19 Si 0.94 46.45 29.55 68.60 2.03 48.48 16 20 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 21 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 22 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 23 C -0.11 -2.89 4.64 30.59 0.14 -2.74 16 24 C -0.11 -3.05 5.75 30.59 0.18 -2.87 16 25 C -0.11 -2.81 5.92 30.59 0.18 -2.63 16 26 C -0.11 -3.46 5.76 30.58 0.18 -3.28 16 27 C -0.11 -3.86 4.53 30.58 0.14 -3.72 16 28 H 0.06 1.44 4.94 -2.39 -0.01 1.43 16 29 H 0.08 1.32 8.11 -2.39 -0.02 1.30 16 30 H 0.03 0.91 7.17 -2.39 -0.02 0.89 16 31 H 0.08 1.17 7.82 -2.39 -0.02 1.16 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.86 7.85 -2.39 -0.02 1.85 16 36 H 0.05 1.61 6.90 -2.39 -0.02 1.59 16 37 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.88 8.13 -2.39 -0.02 1.86 16 39 H 0.06 1.60 7.25 -2.39 -0.02 1.58 16 40 H 0.40 13.29 5.54 -92.71 -0.51 12.78 16 41 H 0.02 1.10 7.42 -2.39 -0.02 1.08 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.38 17.63 6.59 -92.70 -0.61 17.02 16 44 H 0.25 14.03 8.31 -92.71 -0.77 13.25 16 45 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.06 1.67 6.21 -2.39 -0.01 1.65 16 47 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 48 H 0.04 1.47 6.90 -2.39 -0.02 1.46 16 49 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.04 1.69 7.61 -2.39 -0.02 1.67 16 52 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 53 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 54 H 0.03 1.36 7.27 -2.39 -0.02 1.35 16 Total: -1.00 -63.78 393.14 3.87 -59.91 By element: Atomic # 1 Polarization: 42.82 SS G_CDS: -0.25 Total: 42.57 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 4.46 Total: -13.91 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -2.32 Total: -111.57 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.05 Total: -25.47 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -63.78 3.87 -59.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115715285.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.378 kcal (2) G-P(sol) polarization free energy of solvation -63.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds