Wall clock time and date at job start Tue Mar 31 2020 15:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58613 * 2 1 4 4 C 1.53190 * 109.70074 * 120.36166 * 2 1 3 5 5 C 1.53046 * 109.33859 * 174.47561 * 4 2 1 6 6 C 1.53036 * 109.53857 * 298.67946 * 5 4 2 7 7 H 1.08995 * 109.50044 * 301.35109 * 6 5 4 8 8 N 1.46496 * 109.49862 * 181.28126 * 6 5 4 9 9 C 1.34776 * 119.99995 * 155.06396 * 8 6 5 10 10 O 1.21279 * 120.00045 * 0.02562 * 9 8 6 11 11 C 1.50706 * 119.99915 * 180.02562 * 9 8 6 12 12 C 1.53002 * 109.47148 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47075 * 59.99890 * 12 11 9 14 14 C 1.53002 * 109.47031 * 300.00141 * 12 11 9 15 15 C 1.53002 * 109.47031 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47071 * 59.99775 * 15 14 12 17 17 C 1.53001 * 109.47028 * 300.00144 * 16 15 14 18 18 C 1.52995 * 109.47460 * 60.00259 * 17 16 15 19 19 C 1.53198 * 109.33642 * 61.31693 * 6 5 4 20 20 N 1.46920 * 108.77555 * 305.37593 * 19 6 5 21 21 C 1.36935 * 120.63593 * 233.63156 * 20 19 6 22 22 H 1.07998 * 120.00622 * 150.17147 * 21 20 19 23 23 C 1.38815 * 119.99897 * 330.17379 * 21 20 19 24 24 N 1.31622 * 119.99948 * 344.48234 * 23 21 20 25 25 Si 1.86795 * 120.00128 * 164.48587 * 23 21 20 26 26 H 1.48496 * 109.47240 * 0.02562 * 25 23 21 27 27 H 1.48512 * 109.47056 * 120.00132 * 25 23 21 28 28 H 1.48493 * 109.47466 * 239.99660 * 25 23 21 29 29 H 1.09004 * 109.47424 * 180.27945 * 1 2 3 30 30 H 1.08992 * 109.47256 * 300.28162 * 1 2 3 31 31 H 1.09007 * 109.47146 * 60.28241 * 1 2 3 32 32 H 1.08994 * 109.49788 * 294.43855 * 4 2 1 33 33 H 1.08996 * 109.50217 * 54.50738 * 4 2 1 34 34 H 1.08996 * 109.48601 * 178.64420 * 5 4 2 35 35 H 1.09001 * 109.43012 * 58.68323 * 5 4 2 36 36 H 0.96998 * 119.99944 * 335.06842 * 8 6 5 37 37 H 1.08994 * 109.47103 * 60.00060 * 11 9 8 38 38 H 1.09007 * 109.47100 * 299.99899 * 11 9 8 39 39 H 1.08995 * 109.47263 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.47274 * 300.00618 * 13 12 11 41 41 H 1.09007 * 109.47245 * 60.00174 * 13 12 11 42 42 H 1.09003 * 109.46792 * 59.99704 * 14 12 11 43 43 H 1.08994 * 109.47015 * 299.99932 * 14 12 11 44 44 H 1.09007 * 109.46560 * 299.99846 * 15 14 12 45 45 H 1.08995 * 109.47154 * 180.02562 * 15 14 12 46 46 H 1.08994 * 109.47073 * 60.00008 * 16 15 14 47 47 H 1.08995 * 109.46924 * 180.02562 * 16 15 14 48 48 H 1.09005 * 109.46941 * 180.02562 * 17 16 15 49 49 H 1.09004 * 109.46990 * 299.99771 * 17 16 15 50 50 H 1.08994 * 109.47300 * 59.99733 * 18 17 16 51 51 H 1.08997 * 109.46974 * 180.02562 * 18 17 16 52 52 H 1.08994 * 109.58803 * 65.16955 * 19 6 5 53 53 H 1.09009 * 109.58143 * 185.45130 * 19 6 5 54 54 H 0.96993 * 120.00295 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7290 1.2444 5 6 3.5705 -0.8452 1.1678 6 6 3.9602 -1.6609 -0.0671 7 1 3.5040 -2.6491 -0.0091 8 7 5.4177 -1.7975 -0.1229 9 6 5.9724 -2.8379 -0.7759 10 8 5.2650 -3.6607 -1.3176 11 6 7.4718 -2.9787 -0.8328 12 6 7.8363 -4.2340 -1.6281 13 6 7.2807 -4.1168 -3.0488 14 6 7.2341 -5.4634 -0.9448 15 6 7.5991 -6.7187 -1.7397 16 6 9.1214 -6.8614 -1.7970 17 6 9.7235 -5.6319 -2.4803 18 6 9.3585 -4.3767 -1.6853 19 6 3.4653 -0.9425 -1.3264 20 7 2.0225 -0.6981 -1.1954 21 6 1.1533 -1.1133 -2.1686 22 1 0.1402 -1.3825 -1.9088 23 6 1.5743 -1.1882 -3.4892 24 7 2.6832 -0.5849 -3.8617 25 14 0.5671 -2.1452 -4.7378 26 1 -0.6264 -2.7252 -4.0711 27 1 0.1314 -1.2332 -5.8259 28 1 1.3950 -3.2374 -5.3093 29 1 -0.3634 -1.0277 0.0050 30 1 -0.3633 0.5182 0.8874 31 1 -0.3634 0.5095 -0.8926 32 1 1.7688 -0.1674 2.1364 33 1 1.6075 -1.7256 1.2907 34 1 3.9428 -1.3422 2.0635 35 1 4.0071 0.1511 1.0975 36 1 5.9834 -1.1393 0.3101 37 1 7.8676 -3.0618 0.1793 38 1 7.9008 -2.1031 -1.3200 39 1 7.5400 -5.0112 -3.6153 40 1 6.1962 -4.0148 -3.0076 41 1 7.7097 -3.2409 -3.5357 42 1 6.1496 -5.3614 -0.9036 43 1 7.6299 -5.5469 0.0673 44 1 7.2036 -6.6354 -2.7521 45 1 7.1698 -7.5945 -1.2532 46 1 9.5168 -6.9446 -0.7847 47 1 9.3814 -7.7554 -2.3637 48 1 10.8080 -5.7338 -2.5214 49 1 9.3280 -5.5487 -3.4926 50 1 9.7540 -4.4599 -0.6731 51 1 9.7871 -3.5008 -2.1724 52 1 3.9886 0.0076 -1.4346 53 1 3.6547 -1.5655 -2.2007 54 1 2.9773 -0.6370 -4.7845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132169804.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:31 Heat of formation + Delta-G solvation = -64.734838 kcal Electronic energy + Delta-G solvation = -29579.974879 eV Core-core repulsion = 25936.032272 eV Total energy + Delta-G solvation = -3643.942607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.46497 -39.95434 -38.82883 -35.93447 -34.64301 -34.03587 -32.25919 -31.73205 -31.56469 -28.96582 -27.74283 -27.44130 -26.42433 -24.01649 -23.51770 -22.75691 -21.89183 -21.27587 -20.71035 -19.22313 -18.33422 -17.82494 -17.33329 -16.74873 -16.22440 -16.14210 -15.78124 -15.63102 -15.34929 -15.15946 -15.00250 -14.81291 -14.58115 -14.30442 -14.09584 -13.79184 -13.57548 -13.20089 -13.11300 -12.87945 -12.75739 -12.71634 -12.60661 -12.55017 -12.46106 -12.33350 -12.27797 -12.09200 -11.96930 -11.79460 -11.76662 -11.63727 -11.36584 -11.17465 -11.11179 -11.00260 -10.82620 -10.55202 -10.19485 -9.88392 -8.61432 -7.86059 -5.32255 1.37977 1.42416 1.50232 1.84793 2.35148 2.50573 3.30473 3.65640 3.70185 3.82573 3.85535 3.98412 4.09994 4.13327 4.22935 4.28876 4.37236 4.41081 4.49770 4.51172 4.57124 4.64523 4.70623 4.71102 4.72872 4.77382 4.81386 4.87460 4.90089 4.95516 5.00324 5.05544 5.07175 5.15707 5.18519 5.21525 5.23772 5.31935 5.32218 5.36317 5.38899 5.47641 5.49432 5.54159 5.58050 5.61972 5.68275 5.70190 5.78655 5.87917 6.41358 6.78885 7.16099 7.54261 7.90237 8.39420 9.18910 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013788 B = 0.003810 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.237762 B = 7347.089896 C = 8641.723613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.020 0.980 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.133 3.867 7 H 0.047 0.953 8 N -0.715 5.715 9 C 0.499 3.501 10 O -0.569 6.569 11 C -0.124 4.124 12 C -0.037 4.037 13 C -0.152 4.152 14 C -0.116 4.116 15 C -0.120 4.120 16 C -0.113 4.113 17 C -0.121 4.121 18 C -0.102 4.102 19 C 0.183 3.817 20 N -0.604 5.604 21 C -0.250 4.250 22 H 0.073 0.927 23 C -0.051 4.051 24 N -0.932 5.932 25 Si 0.953 3.047 26 H -0.263 1.263 27 H -0.288 1.288 28 H -0.302 1.302 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.411 0.589 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.057 0.943 40 H 0.042 0.958 41 H 0.044 0.956 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.052 0.948 50 H 0.079 0.921 51 H 0.069 0.931 52 H -0.006 1.006 53 H 0.040 0.960 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.832 -5.096 12.053 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.038 0.962 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.027 3.973 7 H 0.066 0.934 8 N -0.367 5.367 9 C 0.288 3.712 10 O -0.449 6.449 11 C -0.164 4.164 12 C -0.037 4.037 13 C -0.209 4.209 14 C -0.153 4.153 15 C -0.158 4.158 16 C -0.150 4.150 17 C -0.158 4.158 18 C -0.139 4.139 19 C 0.056 3.944 20 N -0.328 5.328 21 C -0.380 4.380 22 H 0.090 0.910 23 C -0.246 4.246 24 N -0.579 5.579 25 Si 0.782 3.218 26 H -0.187 1.187 27 H -0.215 1.215 28 H -0.229 1.229 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.247 0.753 37 H 0.140 0.860 38 H 0.124 0.876 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.071 0.929 50 H 0.098 0.902 51 H 0.088 0.912 52 H 0.012 0.988 53 H 0.059 0.941 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.354 -5.657 11.533 19.263 hybrid contribution -0.590 -0.046 -1.395 1.515 sum 13.764 -5.703 10.138 18.020 Atomic orbital electron populations 1.21731 0.94828 1.01079 1.01033 1.20800 0.94238 0.93340 0.86815 0.96192 1.21942 0.94819 1.00738 0.98232 1.21633 0.96862 0.99954 0.96037 1.21400 0.80056 0.98694 0.97193 0.93443 1.46002 1.07201 1.27637 1.55898 1.21428 0.92273 0.80455 0.77069 1.90623 1.65327 1.43246 1.45689 1.21830 0.89672 1.00658 1.04242 1.20216 0.96020 0.93350 0.94111 1.22111 1.01310 1.00753 0.96698 1.21732 1.01124 0.94010 0.98482 1.21543 0.97081 0.97380 0.99792 1.21506 0.94174 0.98015 1.01316 1.21573 1.00737 0.94498 0.99029 1.21565 0.92596 0.98325 1.01454 1.20731 0.83511 0.95042 0.95114 1.44337 1.02622 1.65714 1.20144 1.19490 0.95559 1.36327 0.86655 0.90964 1.25757 0.99069 1.00872 0.98879 1.70163 1.25930 1.45624 1.16149 0.85410 0.78625 0.78161 0.79613 1.18716 1.21452 1.22915 0.93640 0.90269 0.94362 0.88734 0.93091 0.89727 0.91027 0.75290 0.86031 0.87637 0.92370 0.93926 0.93676 0.92706 0.91647 0.93605 0.92491 0.91112 0.91778 0.90496 0.92887 0.90247 0.91234 0.98807 0.94143 0.94716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 7.96 71.98 0.57 -4.16 16 2 C 0.15 6.18 3.49 44.97 0.16 6.33 16 3 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.12 -3.71 5.38 30.67 0.16 -3.55 16 5 C -0.11 -3.16 5.36 30.62 0.16 -2.99 16 6 C 0.13 5.16 2.60 45.07 0.12 5.28 16 7 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 8 N -0.72 -22.30 5.08 -442.17 -2.25 -24.55 16 9 C 0.50 16.71 7.21 87.66 0.63 17.34 16 10 O -0.57 -24.97 11.01 -3.03 -0.03 -25.00 16 11 C -0.12 -2.82 4.77 29.85 0.14 -2.68 16 12 C -0.04 -0.88 0.51 -52.18 -0.03 -0.90 16 13 C -0.15 -4.69 7.48 71.98 0.54 -4.15 16 14 C -0.12 -3.02 4.43 30.60 0.14 -2.89 16 15 C -0.12 -2.84 5.65 30.59 0.17 -2.66 16 16 C -0.11 -1.99 5.92 30.59 0.18 -1.81 16 17 C -0.12 -2.07 5.65 30.59 0.17 -1.90 16 18 C -0.10 -1.76 4.73 30.59 0.14 -1.62 16 19 C 0.18 9.24 4.86 86.37 0.42 9.66 16 20 N -0.60 -31.00 2.99 -675.22 -2.02 -33.02 16 21 C -0.25 -14.22 8.57 84.03 0.72 -13.50 16 22 H 0.07 3.98 6.24 -2.91 -0.02 3.96 16 23 C -0.05 -3.00 4.94 84.86 0.42 -2.58 16 24 N -0.93 -58.49 11.23 21.65 0.24 -58.25 16 25 Si 0.95 48.28 29.58 68.60 2.03 50.31 16 26 H -0.26 -12.54 7.11 99.48 0.71 -11.84 16 27 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 28 H -0.30 -15.77 7.11 99.48 0.71 -15.07 16 29 H 0.04 1.71 7.43 -2.38 -0.02 1.69 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.04 1.55 7.63 -2.38 -0.02 1.53 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.41 9.33 8.60 -92.71 -0.80 8.53 16 37 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.06 1.68 4.81 -2.39 -0.01 1.67 16 40 H 0.04 1.73 5.51 -2.39 -0.01 1.72 16 41 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.05 1.89 5.51 -2.39 -0.01 1.88 16 43 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.05 1.23 6.43 -2.38 -0.02 1.22 16 45 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 49 H 0.05 1.04 6.43 -2.38 -0.02 1.03 16 50 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 52 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 53 H 0.04 2.46 6.15 -2.38 -0.01 2.44 16 54 H 0.24 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -74.75 389.77 2.87 -71.88 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.07 Total: 25.40 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 4.83 Total: -6.78 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -4.02 Total: -115.81 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.03 Total: -25.00 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.31 kcal Total: -74.75 2.87 -71.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132169804.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.146 kcal (2) G-P(sol) polarization free energy of solvation -74.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds