Wall clock time and date at job start Tue Mar 31 2020 15:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.58027 * 2 1 4 4 C 1.53192 * 109.59061 * 239.71593 * 2 1 3 5 5 C 1.53038 * 109.31189 * 185.57533 * 4 2 1 6 6 C 1.53032 * 109.53829 * 61.36786 * 5 4 2 7 7 H 1.08998 * 109.49922 * 58.61461 * 6 5 4 8 8 N 1.46500 * 109.50143 * 178.68028 * 6 5 4 9 9 C 1.34774 * 120.00639 * 205.00129 * 8 6 5 10 10 O 1.21286 * 119.99435 * 359.97438 * 9 8 6 11 11 C 1.50691 * 120.00315 * 180.02562 * 9 8 6 12 12 C 1.53002 * 109.47473 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47040 * 59.99603 * 12 11 9 14 14 C 1.53001 * 109.46659 * 299.99918 * 12 11 9 15 15 C 1.53000 * 109.47141 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47164 * 59.99609 * 15 14 12 17 17 C 1.53005 * 109.47299 * 300.00570 * 16 15 14 18 18 C 1.52992 * 109.47317 * 59.99189 * 17 16 15 19 19 C 1.53199 * 109.31406 * 298.63327 * 6 5 4 20 20 N 1.46922 * 109.58576 * 120.42536 * 2 1 3 21 21 C 1.36939 * 120.63083 * 353.37719 * 20 2 1 22 22 H 1.08000 * 120.00271 * 29.02150 * 21 20 2 23 23 C 1.38815 * 119.99981 * 209.01931 * 21 20 2 24 24 N 1.31619 * 119.99802 * 15.03051 * 23 21 20 25 25 Si 1.86804 * 120.00106 * 195.03034 * 23 21 20 26 26 H 1.48500 * 109.46806 * 89.99905 * 25 23 21 27 27 H 1.48495 * 109.47237 * 209.99969 * 25 23 21 28 28 H 1.48494 * 109.46723 * 330.00200 * 25 23 21 29 29 H 1.09003 * 109.47076 * 180.28179 * 1 2 3 30 30 H 1.08996 * 109.47794 * 300.28154 * 1 2 3 31 31 H 1.09004 * 109.47313 * 60.28711 * 1 2 3 32 32 H 1.09006 * 109.49251 * 65.62632 * 4 2 1 33 33 H 1.08995 * 109.52248 * 305.54572 * 4 2 1 34 34 H 1.08999 * 109.46032 * 301.34285 * 5 4 2 35 35 H 1.09001 * 109.44571 * 181.37810 * 5 4 2 36 36 H 0.97008 * 119.99697 * 24.99892 * 8 6 5 37 37 H 1.08998 * 109.47580 * 59.99392 * 11 9 8 38 38 H 1.09003 * 109.47055 * 299.99759 * 11 9 8 39 39 H 1.09003 * 109.46902 * 180.02562 * 13 12 11 40 40 H 1.09004 * 109.47168 * 300.00352 * 13 12 11 41 41 H 1.09000 * 109.47365 * 60.00073 * 13 12 11 42 42 H 1.08995 * 109.47332 * 59.99688 * 14 12 11 43 43 H 1.09006 * 109.47090 * 299.99593 * 14 12 11 44 44 H 1.09001 * 109.47179 * 300.00309 * 15 14 12 45 45 H 1.08991 * 109.47630 * 179.97438 * 15 14 12 46 46 H 1.08998 * 109.47169 * 59.99961 * 16 15 14 47 47 H 1.08993 * 109.47197 * 180.02562 * 16 15 14 48 48 H 1.08995 * 109.47220 * 179.97438 * 17 16 15 49 49 H 1.09006 * 109.46865 * 299.99740 * 17 16 15 50 50 H 1.09006 * 109.46704 * 60.00452 * 18 17 16 51 51 H 1.08994 * 109.47314 * 179.97438 * 18 17 16 52 52 H 1.08998 * 109.58989 * 174.42209 * 19 6 5 53 53 H 1.09004 * 109.58106 * 294.84749 * 19 6 5 54 54 H 0.97002 * 120.00103 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5676 -0.8464 -1.1711 6 6 3.9570 -1.6656 0.0614 7 1 3.4989 -2.6528 0.0017 8 7 5.4143 -1.8053 0.1154 9 6 5.9678 -2.8489 0.7642 10 8 5.2593 -3.6722 1.3039 11 6 7.4668 -2.9922 0.8202 12 6 7.8298 -4.2509 1.6106 13 6 7.2255 -5.4769 0.9230 14 6 7.2748 -4.1382 3.0320 15 6 7.6371 -5.3971 3.8223 16 6 9.1591 -5.5433 3.8791 17 6 9.7141 -5.6560 2.4577 18 6 9.3517 -4.3971 1.6674 19 6 3.4650 -0.9485 1.3227 20 7 2.0225 -0.7010 1.1936 21 6 1.1537 -1.1154 2.1676 22 1 0.1358 -1.3694 1.9108 23 6 1.5811 -1.2090 3.4849 24 7 2.7044 -0.6313 3.8549 25 14 0.5622 -2.1549 4.7326 26 1 0.9963 -3.5749 4.7515 27 1 0.7532 -1.5609 6.0801 28 1 -0.8727 -2.0809 4.3577 29 1 -0.3633 -1.0277 0.0051 30 1 -0.3634 0.5182 0.8874 31 1 -0.3634 0.5094 -0.8926 32 1 1.7661 -0.1641 -2.1370 33 1 1.6031 -1.7236 -1.2940 34 1 4.0061 0.1489 -1.0990 35 1 3.9377 -1.3422 -2.0684 36 1 5.9809 -1.1466 -0.3159 37 1 7.8973 -2.1190 1.3104 38 1 7.8622 -3.0720 -0.1924 39 1 7.4837 -6.3736 1.4864 40 1 6.1412 -5.3732 0.8825 41 1 7.6208 -5.5572 -0.0897 42 1 6.1906 -4.0345 2.9915 43 1 7.7053 -3.2647 3.5219 44 1 7.2064 -6.2703 3.3322 45 1 7.2422 -5.3167 4.8350 46 1 9.5900 -4.6702 4.3691 47 1 9.4172 -6.4404 4.4417 48 1 10.7983 -5.7596 2.4981 49 1 9.2833 -6.5291 1.9676 50 1 9.7825 -3.5239 2.1574 51 1 9.7474 -4.4772 0.6550 52 1 3.6517 -1.5743 2.1953 53 1 3.9903 0.0004 1.4318 54 1 3.0030 -0.6964 4.7755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132169805.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:36 Heat of formation + Delta-G solvation = -64.272902 kcal Electronic energy + Delta-G solvation = -29638.051643 eV Core-core repulsion = 25994.129068 eV Total energy + Delta-G solvation = -3643.922576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.46396 -39.95762 -38.83371 -35.93408 -34.65092 -34.04289 -32.26169 -31.72030 -31.57923 -28.94825 -27.74966 -27.42053 -26.42796 -24.01167 -23.52973 -22.76218 -21.90031 -21.27248 -20.71148 -19.22948 -18.33236 -17.82206 -17.34684 -16.70937 -16.33996 -16.08221 -15.82494 -15.54712 -15.35698 -15.12066 -14.98382 -14.95050 -14.49198 -14.33243 -14.11748 -13.75223 -13.57081 -13.28777 -13.06152 -12.83952 -12.77352 -12.72528 -12.60989 -12.55746 -12.44365 -12.33020 -12.27261 -12.08921 -11.97458 -11.81124 -11.70046 -11.65220 -11.38872 -11.22137 -11.09553 -11.00848 -10.83557 -10.54622 -10.17495 -9.89588 -8.62390 -7.85465 -5.31586 1.38242 1.43300 1.48657 1.84914 2.35368 2.50654 3.30727 3.65636 3.70685 3.82086 3.84768 3.98424 4.10144 4.10965 4.25325 4.27916 4.35513 4.40904 4.50282 4.50548 4.56692 4.64585 4.69218 4.71000 4.73098 4.77307 4.81506 4.86531 4.89933 4.95789 5.00045 5.06913 5.07419 5.16221 5.18681 5.21396 5.23859 5.30443 5.31965 5.36638 5.39691 5.46979 5.48655 5.53667 5.57970 5.61927 5.68394 5.69815 5.79709 5.88714 6.41157 6.78978 7.16073 7.54459 7.90512 8.39049 9.19074 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013325 B = 0.004021 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.746473 B = 6962.342075 C = 8562.230470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.021 0.979 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.133 3.867 7 H 0.047 0.953 8 N -0.715 5.715 9 C 0.499 3.501 10 O -0.569 6.569 11 C -0.125 4.125 12 C -0.036 4.036 13 C -0.149 4.149 14 C -0.120 4.120 15 C -0.119 4.119 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.103 4.103 19 C 0.182 3.818 20 N -0.604 5.604 21 C -0.250 4.250 22 H 0.074 0.926 23 C -0.051 4.051 24 N -0.932 5.932 25 Si 0.953 3.047 26 H -0.298 1.298 27 H -0.294 1.294 28 H -0.261 1.261 29 H 0.045 0.955 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.411 0.589 37 H 0.104 0.896 38 H 0.123 0.877 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.060 0.940 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.081 0.919 52 H 0.043 0.957 53 H -0.006 1.006 54 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.825 -4.574 -11.260 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.039 0.961 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.026 3.974 7 H 0.065 0.935 8 N -0.367 5.367 9 C 0.288 3.712 10 O -0.449 6.449 11 C -0.164 4.164 12 C -0.037 4.037 13 C -0.206 4.206 14 C -0.158 4.158 15 C -0.156 4.156 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.140 4.140 19 C 0.054 3.946 20 N -0.328 5.328 21 C -0.381 4.381 22 H 0.091 0.909 23 C -0.246 4.246 24 N -0.579 5.579 25 Si 0.783 3.217 26 H -0.225 1.225 27 H -0.220 1.220 28 H -0.185 1.185 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.247 0.753 37 H 0.122 0.878 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.096 0.904 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.099 0.901 52 H 0.062 0.938 53 H 0.012 0.988 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.345 -5.129 -10.736 18.637 hybrid contribution -0.629 -0.019 1.387 1.523 sum 13.717 -5.149 -9.348 17.379 Atomic orbital electron populations 1.21736 0.94835 1.01084 1.01037 1.20796 0.94242 0.93332 0.86829 0.96148 1.21947 0.94822 1.00744 0.98233 1.21633 0.96878 0.99923 0.96062 1.21403 0.80068 0.98656 0.97227 0.93495 1.46003 1.07215 1.27412 1.56113 1.21429 0.92284 0.80469 0.77050 1.90626 1.65255 1.43319 1.45692 1.21828 0.89661 1.00633 1.04290 1.20210 0.96054 0.93756 0.93649 1.22095 1.01420 0.97305 0.99795 1.21745 1.00922 0.97474 0.95650 1.21525 0.97321 0.97853 0.98907 1.21524 0.94030 1.01797 0.97863 1.21558 1.00915 0.98155 0.94838 1.21573 0.92571 0.98567 1.01287 1.20768 0.83459 0.95098 0.95227 1.44341 1.02707 1.65539 1.20245 1.19491 0.95184 1.36573 0.86825 0.90852 1.25744 0.98996 1.01051 0.98844 1.70157 1.25001 1.46365 1.16375 0.85460 0.79429 0.78030 0.78823 1.22544 1.22027 1.18548 0.93635 0.94377 0.90248 0.88724 0.93096 0.91027 0.89756 0.75303 0.87794 0.85931 0.92355 0.93393 0.92070 0.93394 0.93453 0.92501 0.93727 0.92087 0.91495 0.90395 0.91842 0.91447 0.90060 0.93827 0.98848 0.94746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 7.94 71.98 0.57 -4.17 16 2 C 0.15 6.18 3.50 44.98 0.16 6.34 16 3 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.12 -3.72 5.37 30.67 0.16 -3.56 16 5 C -0.11 -3.17 5.35 30.62 0.16 -3.01 16 6 C 0.13 5.18 2.60 45.07 0.12 5.30 16 7 H 0.05 2.15 7.58 -2.39 -0.02 2.14 16 8 N -0.72 -22.44 5.08 -442.18 -2.25 -24.68 16 9 C 0.50 16.79 7.21 87.65 0.63 17.42 16 10 O -0.57 -25.09 11.01 -3.05 -0.03 -25.12 16 11 C -0.12 -2.83 4.77 29.85 0.14 -2.69 16 12 C -0.04 -0.87 0.51 -52.18 -0.03 -0.90 16 13 C -0.15 -3.87 7.48 71.98 0.54 -3.33 16 14 C -0.12 -3.73 4.43 30.59 0.14 -3.59 16 15 C -0.12 -3.20 5.65 30.60 0.17 -3.02 16 16 C -0.11 -2.29 5.92 30.60 0.18 -2.11 16 17 C -0.12 -1.97 5.65 30.59 0.17 -1.79 16 18 C -0.10 -1.76 4.73 30.59 0.14 -1.62 16 19 C 0.18 9.18 4.86 86.36 0.42 9.60 16 20 N -0.60 -31.05 2.99 -675.22 -2.02 -33.07 16 21 C -0.25 -14.25 8.61 84.03 0.72 -13.53 16 22 H 0.07 4.04 6.20 -2.91 -0.02 4.02 16 23 C -0.05 -3.04 4.96 84.86 0.42 -2.62 16 24 N -0.93 -58.57 11.14 21.65 0.24 -58.33 16 25 Si 0.95 48.35 29.58 68.60 2.03 50.38 16 26 H -0.30 -15.48 7.11 99.48 0.71 -14.78 16 27 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 28 H -0.26 -12.32 7.11 99.48 0.71 -11.62 16 29 H 0.04 1.72 7.40 -2.39 -0.02 1.70 16 30 H 0.04 1.54 7.66 -2.39 -0.02 1.52 16 31 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.41 9.40 8.60 -92.70 -0.80 8.60 16 37 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.06 1.43 4.81 -2.39 -0.01 1.42 16 40 H 0.05 1.64 5.51 -2.38 -0.01 1.62 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.05 1.98 5.51 -2.39 -0.01 1.96 16 43 H 0.05 1.44 8.14 -2.38 -0.02 1.43 16 44 H 0.06 1.57 6.43 -2.39 -0.02 1.56 16 45 H 0.04 1.26 8.14 -2.39 -0.02 1.25 16 46 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.06 1.09 6.43 -2.38 -0.02 1.08 16 50 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 51 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.04 2.66 6.06 -2.39 -0.01 2.65 16 53 H -0.01 -0.35 8.14 -2.38 -0.02 -0.36 16 54 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -74.94 389.59 2.87 -72.07 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.07 Total: 26.03 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 4.83 Total: -7.27 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -4.02 Total: -116.09 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.03 Total: -25.12 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.38 kcal Total: -74.94 2.87 -72.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132169805.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.797 kcal (2) G-P(sol) polarization free energy of solvation -74.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds