Wall clock time and date at job start Tue Mar 31 2020 15:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.58668 * 2 1 4 4 C 1.53191 * 109.58521 * 120.28511 * 2 1 3 5 5 C 1.53040 * 109.31279 * 174.42449 * 4 2 1 6 6 C 1.53045 * 109.53436 * 298.63422 * 5 4 2 7 7 H 1.09007 * 109.49613 * 181.34870 * 6 5 4 8 8 N 1.46501 * 109.49591 * 301.40926 * 6 5 4 9 9 C 1.34780 * 119.99908 * 204.99639 * 8 6 5 10 10 O 1.21277 * 120.00011 * 0.02562 * 9 8 6 11 11 C 1.50700 * 119.99856 * 179.97438 * 9 8 6 12 12 C 1.52999 * 109.47196 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46892 * 60.00238 * 12 11 9 14 14 C 1.53000 * 109.47176 * 180.02562 * 12 11 9 15 15 C 1.52996 * 109.46932 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47023 * 299.99559 * 15 14 12 17 17 C 1.53000 * 109.46907 * 60.00426 * 16 15 14 18 18 C 1.52999 * 109.47176 * 299.99915 * 17 16 15 19 19 C 1.53188 * 109.31418 * 61.36757 * 6 5 4 20 20 N 1.46927 * 108.77262 * 305.36045 * 19 6 5 21 21 C 1.36940 * 120.63014 * 233.63076 * 20 19 6 22 22 H 1.08001 * 119.99839 * 150.14481 * 21 20 19 23 23 C 1.38809 * 120.00185 * 330.13880 * 21 20 19 24 24 N 1.31614 * 120.00146 * 344.51599 * 23 21 20 25 25 Si 1.86796 * 120.00022 * 164.50792 * 23 21 20 26 26 H 1.48497 * 109.46984 * 60.00292 * 25 23 21 27 27 H 1.48499 * 109.47450 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47209 * 300.00661 * 25 23 21 29 29 H 1.08997 * 109.47442 * 299.71673 * 1 2 3 30 30 H 1.09003 * 109.47250 * 59.71749 * 1 2 3 31 31 H 1.08998 * 109.47500 * 179.71404 * 1 2 3 32 32 H 1.08995 * 109.49935 * 54.46857 * 4 2 1 33 33 H 1.09001 * 109.49678 * 294.37184 * 4 2 1 34 34 H 1.08997 * 109.46474 * 178.61231 * 5 4 2 35 35 H 1.08999 * 109.46125 * 58.65107 * 5 4 2 36 36 H 0.97000 * 119.99605 * 25.00675 * 8 6 5 37 37 H 1.09001 * 109.46618 * 60.00594 * 11 9 8 38 38 H 1.08996 * 109.47514 * 300.01117 * 11 9 8 39 39 H 1.09003 * 109.46999 * 179.97438 * 13 12 11 40 40 H 1.08995 * 109.47121 * 300.00248 * 13 12 11 41 41 H 1.09004 * 109.46635 * 60.00262 * 13 12 11 42 42 H 1.09001 * 109.47085 * 59.99875 * 14 12 11 43 43 H 1.08999 * 109.46612 * 300.00191 * 14 12 11 44 44 H 1.09002 * 109.47203 * 180.02562 * 15 14 12 45 45 H 1.09001 * 109.47571 * 59.99888 * 15 14 12 46 46 H 1.09001 * 109.46819 * 179.97438 * 16 15 14 47 47 H 1.08996 * 109.47463 * 300.00160 * 16 15 14 48 48 H 1.09001 * 109.47085 * 60.00040 * 17 16 15 49 49 H 1.08996 * 109.47067 * 179.97438 * 17 16 15 50 50 H 1.09001 * 109.47216 * 300.00044 * 18 17 16 51 51 H 1.08995 * 109.47440 * 180.02562 * 18 17 16 52 52 H 1.08994 * 109.58755 * 65.15340 * 19 6 5 53 53 H 1.09000 * 109.58611 * 185.58206 * 19 6 5 54 54 H 0.96998 * 120.00440 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 1.2463 5 6 3.5674 -0.8465 1.1712 6 6 3.9568 -1.6658 -0.0614 7 1 5.0412 -1.7702 -0.1012 8 7 3.3405 -2.9924 0.0186 9 6 3.8970 -4.0343 -0.6306 10 8 4.9082 -3.8736 -1.2805 11 6 3.2633 -5.3991 -0.5478 12 6 4.0871 -6.3944 -1.3672 13 6 5.5108 -6.4585 -0.8103 14 6 3.4434 -7.7799 -1.2837 15 6 4.2676 -8.7753 -2.1026 16 6 4.3122 -8.3209 -3.5630 17 6 4.9559 -6.9354 -3.6465 18 6 4.1318 -5.9399 -2.8275 19 6 3.4651 -0.9486 -1.3225 20 7 2.0225 -0.7011 -1.1936 21 6 1.1536 -1.1162 -2.1672 22 1 0.1398 -1.3834 -1.9080 23 6 1.5759 -1.1936 -3.4873 24 7 2.6864 -0.5931 -3.8593 25 14 0.5681 -2.1502 -4.7357 26 1 -0.7926 -1.5626 -4.8281 27 1 1.2291 -2.0804 -6.0636 28 1 0.4666 -3.5686 -4.3076 29 1 -0.3634 0.5094 0.8925 30 1 -0.3634 0.5182 -0.8875 31 1 -0.3634 -1.0276 -0.0051 32 1 1.6029 -1.7237 1.2935 33 1 1.7660 -0.1642 2.1370 34 1 3.9378 -1.3422 2.0686 35 1 4.0061 0.1487 1.0992 36 1 2.5318 -3.1209 0.5386 37 1 2.2490 -5.3532 -0.9442 38 1 3.2325 -5.7229 0.4925 39 1 6.0976 -7.1680 -1.3938 40 1 5.9691 -5.4714 -0.8701 41 1 5.4796 -6.7823 0.2301 42 1 2.4293 -7.7339 -1.6807 43 1 3.4120 -8.1037 -0.2434 44 1 3.8088 -9.7623 -2.0435 45 1 5.2816 -8.8213 -1.7053 46 1 4.8998 -9.0299 -4.1463 47 1 3.2983 -8.2750 -3.9604 48 1 5.9699 -6.9813 -3.2491 49 1 4.9881 -6.6119 -4.6868 50 1 3.1178 -5.8940 -3.2249 51 1 4.5901 -4.9528 -2.8873 52 1 3.9903 0.0002 -1.4316 53 1 3.6517 -1.5745 -2.1951 54 1 2.9817 -0.6475 -4.7816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132169806.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:40 Heat of formation + Delta-G solvation = -60.511505 kcal Electronic energy + Delta-G solvation = -30350.320959 eV Core-core repulsion = 26706.561489 eV Total energy + Delta-G solvation = -3643.759469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.45565 -40.05507 -38.70482 -35.71018 -34.47597 -34.02712 -32.21446 -31.72283 -31.58820 -28.81207 -27.79911 -27.44801 -26.57393 -23.88601 -23.53589 -22.83111 -22.00277 -21.27323 -20.31987 -19.22667 -18.25587 -17.85363 -17.15925 -16.60214 -16.36120 -16.00096 -15.84573 -15.55016 -15.36939 -15.13572 -14.93249 -14.80648 -14.45491 -14.34140 -14.00523 -13.74452 -13.67000 -13.24818 -12.95786 -12.92372 -12.79352 -12.60395 -12.58510 -12.55748 -12.41305 -12.40932 -12.30416 -12.11916 -12.06243 -11.82058 -11.73023 -11.55931 -11.21177 -11.17824 -11.03243 -10.99902 -10.84134 -10.52201 -10.12982 -9.75288 -8.54811 -7.81064 -5.26525 1.39415 1.42656 1.47420 1.91962 2.49444 2.53655 3.34732 3.65373 3.72024 3.80722 3.84213 4.03603 4.11741 4.13989 4.21084 4.26077 4.35859 4.49789 4.50641 4.52680 4.56437 4.66887 4.69245 4.73482 4.75146 4.78297 4.83846 4.85752 4.96159 4.98226 5.06306 5.08141 5.11378 5.13024 5.17492 5.22459 5.23875 5.28649 5.30134 5.34975 5.39784 5.45986 5.49921 5.57672 5.62701 5.65816 5.72116 5.75473 5.76774 5.94137 6.45418 6.86390 7.20260 7.59716 7.94775 8.45903 9.23730 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012307 B = 0.004962 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.666881 B = 5641.281818 C = 6952.666283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.009 0.991 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.130 3.870 7 H 0.061 0.939 8 N -0.698 5.698 9 C 0.504 3.496 10 O -0.574 6.574 11 C -0.127 4.127 12 C -0.035 4.035 13 C -0.146 4.146 14 C -0.105 4.105 15 C -0.115 4.115 16 C -0.116 4.116 17 C -0.116 4.116 18 C -0.120 4.120 19 C 0.174 3.826 20 N -0.593 5.593 21 C -0.235 4.235 22 H 0.075 0.925 23 C -0.052 4.052 24 N -0.936 5.936 25 Si 0.946 3.054 26 H -0.272 1.272 27 H -0.306 1.306 28 H -0.280 1.280 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.404 0.596 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.064 0.936 49 H 0.044 0.956 50 H 0.032 0.968 51 H 0.052 0.948 52 H -0.011 1.011 53 H 0.046 0.954 54 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.313 -13.493 12.606 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.027 0.973 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.024 3.976 7 H 0.079 0.921 8 N -0.349 5.349 9 C 0.292 3.708 10 O -0.454 6.454 11 C -0.167 4.167 12 C -0.036 4.036 13 C -0.203 4.203 14 C -0.142 4.142 15 C -0.152 4.152 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.158 4.158 19 C 0.047 3.953 20 N -0.317 5.317 21 C -0.366 4.366 22 H 0.093 0.907 23 C -0.247 4.247 24 N -0.583 5.583 25 Si 0.776 3.224 26 H -0.198 1.198 27 H -0.233 1.233 28 H -0.206 1.206 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.241 0.759 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.062 0.938 50 H 0.051 0.949 51 H 0.071 0.929 52 H 0.007 0.993 53 H 0.065 0.935 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.054 -13.341 12.010 17.982 hybrid contribution -0.554 0.355 -1.572 1.704 sum 0.500 -12.986 10.438 16.668 Atomic orbital electron populations 1.21716 0.94696 1.01390 1.00692 1.20764 0.94162 0.93044 0.87224 0.97291 1.21937 0.94704 1.01112 0.97871 1.21645 0.97268 0.99676 0.96202 1.21366 0.96099 0.83085 0.97099 0.92109 1.45835 1.29671 1.07807 1.51542 1.21152 0.84182 0.87460 0.77969 1.90548 1.27256 1.85739 1.41883 1.21797 1.00250 0.90801 1.03861 1.20194 0.95723 0.94254 0.93379 1.22070 0.95597 1.02366 1.00227 1.21586 0.98678 0.92782 1.01161 1.21546 1.00886 0.98549 0.94248 1.21538 1.00477 0.95577 0.97794 1.21518 0.99538 0.95665 0.98658 1.21739 0.98728 0.99624 0.95678 1.20817 0.84081 0.94924 0.95440 1.44232 1.02211 1.65304 1.19931 1.19345 0.95364 1.35545 0.86309 0.90715 1.25704 0.98878 1.01180 0.98894 1.70159 1.26017 1.46059 1.16101 0.85647 0.78691 0.79470 0.78597 1.19752 1.23264 1.20633 0.90664 0.94833 0.92840 0.91608 0.89390 0.89695 0.91460 0.75914 0.89304 0.86216 0.92104 0.92853 0.92077 0.92318 0.89986 0.90484 0.91278 0.91102 0.92778 0.91726 0.93756 0.94872 0.92917 0.99345 0.93544 0.94984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 7.95 71.98 0.57 -3.71 16 2 C 0.15 5.77 3.50 44.97 0.16 5.93 16 3 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 4 C -0.12 -3.26 5.21 30.67 0.16 -3.10 16 5 C -0.11 -3.17 5.59 30.62 0.17 -3.00 16 6 C 0.13 4.91 2.81 45.07 0.13 5.03 16 7 H 0.06 2.44 7.58 -2.38 -0.02 2.43 16 8 N -0.70 -23.55 4.92 -442.15 -2.17 -25.72 16 9 C 0.50 17.98 7.21 87.66 0.63 18.61 16 10 O -0.57 -24.92 11.01 -3.02 -0.03 -24.95 16 11 C -0.13 -3.41 4.77 29.85 0.14 -3.27 16 12 C -0.04 -0.93 0.51 -52.18 -0.03 -0.95 16 13 C -0.15 -3.80 7.48 71.98 0.54 -3.26 16 14 C -0.10 -2.10 4.73 30.59 0.14 -1.95 16 15 C -0.12 -2.11 5.65 30.59 0.17 -1.94 16 16 C -0.12 -2.54 5.92 30.60 0.18 -2.36 16 17 C -0.12 -3.27 5.65 30.59 0.17 -3.10 16 18 C -0.12 -4.05 4.43 30.59 0.14 -3.91 16 19 C 0.17 8.65 4.89 86.36 0.42 9.07 16 20 N -0.59 -28.27 2.90 -675.25 -1.96 -30.23 16 21 C -0.23 -12.44 8.58 84.03 0.72 -11.72 16 22 H 0.08 3.78 6.23 -2.91 -0.02 3.76 16 23 C -0.05 -2.95 4.94 84.86 0.42 -2.53 16 24 N -0.94 -58.22 11.23 21.65 0.24 -57.98 16 25 Si 0.95 46.59 29.58 68.60 2.03 48.62 16 26 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 28 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.03 1.28 7.67 -2.39 -0.02 1.26 16 31 H 0.05 1.77 7.40 -2.39 -0.02 1.75 16 32 H 0.07 1.73 6.40 -2.39 -0.02 1.71 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.40 11.59 6.77 -92.71 -0.63 10.96 16 37 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.06 1.46 4.81 -2.39 -0.01 1.45 16 40 H 0.05 1.77 5.51 -2.39 -0.01 1.76 16 41 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 1.23 6.43 -2.39 -0.02 1.21 16 46 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.06 1.77 6.43 -2.39 -0.02 1.75 16 49 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 50 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.05 2.25 5.51 -2.39 -0.01 2.24 16 52 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 53 H 0.05 2.76 6.15 -2.39 -0.01 2.75 16 54 H 0.24 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -69.98 386.22 3.19 -66.79 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.24 Total: 29.65 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 4.84 Total: -6.18 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -3.89 Total: -113.93 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.03 Total: -24.95 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -69.98 3.19 -66.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132169806.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.278 kcal (2) G-P(sol) polarization free energy of solvation -69.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds