Wall clock time and date at job start Tue Mar 31 2020 15:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47313 * 2 1 4 4 C 1.52995 * 109.47194 * 120.00204 * 2 1 3 5 5 C 1.53007 * 109.47448 * 65.39352 * 4 2 1 6 6 C 1.50694 * 112.84824 * 48.36083 * 5 4 2 7 7 O 1.21287 * 120.00034 * 18.38952 * 6 5 4 8 8 N 1.34773 * 120.00184 * 198.38686 * 6 5 4 9 9 C 1.46508 * 120.00250 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.49632 * 34.99539 * 9 8 6 11 11 C 1.53039 * 109.49626 * 155.06174 * 9 8 6 12 12 C 1.53106 * 109.50365 * 58.62223 * 11 9 8 13 13 C 1.53195 * 109.33264 * 61.33669 * 12 11 9 14 14 H 1.08999 * 109.58555 * 65.15379 * 13 12 11 15 15 C 1.52995 * 109.70337 * 185.50703 * 13 12 11 16 16 N 1.46929 * 108.77814 * 305.36914 * 13 12 11 17 17 C 1.36936 * 120.62701 * 233.58628 * 16 13 12 18 18 H 1.07992 * 120.00124 * 30.86385 * 17 16 13 19 19 C 1.38810 * 119.99754 * 210.85254 * 17 16 13 20 20 N 1.31627 * 119.99963 * 12.34032 * 19 17 16 21 21 Si 1.86798 * 120.00290 * 192.33011 * 19 17 16 22 22 H 1.48507 * 109.47040 * 60.00314 * 21 19 17 23 23 H 1.48495 * 109.47391 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47102 * 300.00797 * 21 19 17 25 25 C 1.46921 * 118.73835 * 53.60317 * 16 13 12 26 26 C 1.53777 * 113.61664 * 179.56097 * 5 4 2 27 27 C 1.53781 * 87.08298 * 89.11643 * 26 5 4 28 28 C 1.53784 * 87.17143 * 25.38816 * 27 26 5 29 29 H 1.08996 * 109.47351 * 170.86059 * 1 2 3 30 30 H 1.09004 * 109.46652 * 290.86124 * 1 2 3 31 31 H 1.08999 * 109.46894 * 50.86338 * 1 2 3 32 32 H 1.09003 * 109.47006 * 239.99686 * 2 1 3 33 33 H 1.09000 * 109.46789 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46900 * 299.99792 * 3 2 1 35 35 H 1.08992 * 109.46684 * 60.00219 * 3 2 1 36 36 H 1.08999 * 109.47295 * 305.39735 * 4 2 1 37 37 H 1.09002 * 109.47761 * 185.39119 * 4 2 1 38 38 H 0.97002 * 119.99995 * 0.02562 * 8 6 5 39 39 H 1.09002 * 109.45579 * 178.60672 * 11 9 8 40 40 H 1.08996 * 109.46541 * 298.56146 * 11 9 8 41 41 H 1.08997 * 109.48731 * 301.37974 * 12 11 9 42 42 H 1.08994 * 109.51333 * 181.30883 * 12 11 9 43 43 H 1.09008 * 109.46987 * 179.36310 * 15 13 12 44 44 H 1.08993 * 109.47529 * 299.35996 * 15 13 12 45 45 H 1.09000 * 109.47081 * 59.36846 * 15 13 12 46 46 H 0.96991 * 119.99719 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.58816 * 186.60966 * 25 16 13 48 48 H 1.09003 * 109.70294 * 66.25469 * 25 16 13 49 49 H 1.09001 * 113.61396 * 334.56472 * 26 5 4 50 50 H 1.08998 * 113.61601 * 203.66606 * 26 5 4 51 51 H 1.09000 * 113.61638 * 139.98090 * 27 26 5 52 52 H 1.09007 * 113.61242 * 270.80014 * 27 26 5 53 53 H 1.09000 * 113.60987 * 89.16108 * 28 27 26 54 54 H 1.09007 * 113.61303 * 220.06065 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6438 -2.1977 1.1832 6 6 1.9711 -2.8327 -0.1436 7 8 2.7731 -2.3069 -0.8861 8 7 1.3727 -3.9849 -0.5052 9 6 1.6914 -4.6026 -1.7949 10 1 2.7429 -4.4355 -2.0283 11 6 1.4167 -6.1064 -1.7228 12 6 -0.0529 -6.3408 -1.3627 13 6 -0.9446 -5.7374 -2.4524 14 1 -0.7904 -6.2732 -3.3890 15 6 -2.4128 -5.8449 -2.0357 16 7 -0.5849 -4.3238 -2.6288 17 6 -1.5405 -3.3459 -2.5521 18 1 -2.3995 -3.4795 -1.9114 19 6 -1.4048 -2.1830 -3.2977 20 7 -0.5015 -2.1150 -4.2527 21 14 -2.5044 -0.7144 -2.9461 22 1 -2.3005 -0.2677 -1.5445 23 1 -2.1624 0.3935 -3.8738 24 1 -3.9247 -1.1017 -3.1404 25 6 0.8194 -3.9794 -2.8895 26 6 2.1207 -3.0181 2.3932 27 6 0.7953 -2.6378 3.0741 28 6 0.2066 -2.4705 1.6632 29 1 -0.3634 -1.0146 -0.1632 30 1 -0.3633 0.3660 0.9604 31 1 -0.3633 0.6486 -0.7971 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.5999 -0.2663 2.1365 37 1 3.1258 -0.6385 1.2988 38 1 0.7310 -4.4052 0.0885 39 1 1.6304 -6.5613 -2.6900 40 1 2.0541 -6.5559 -0.9615 41 1 -0.2735 -5.8650 -0.4072 42 1 -0.2432 -7.4115 -1.2885 43 1 -3.0430 -5.4044 -2.8084 44 1 -2.6776 -6.8942 -1.9055 45 1 -2.5638 -5.3127 -1.0966 46 1 -0.4070 -1.3026 -4.7739 47 1 0.9381 -2.8959 -2.8786 48 1 1.1191 -4.3700 -3.8620 49 1 2.9995 -2.6008 2.8847 50 1 2.2158 -4.0843 2.1877 51 1 0.3458 -3.4532 3.6408 52 1 0.8460 -1.7071 3.6392 53 1 -0.2226 -3.3867 1.2578 54 1 -0.4576 -1.6116 1.5663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132169827.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:20 Heat of formation + Delta-G solvation = -27.473498 kcal Electronic energy + Delta-G solvation = -31369.248134 eV Core-core repulsion = 27726.921301 eV Total energy + Delta-G solvation = -3642.326834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.89125 -39.87752 -38.37752 -36.50480 -35.52911 -34.43523 -32.07851 -31.68796 -29.40295 -28.38430 -27.88722 -26.84340 -26.26641 -25.40506 -23.84702 -22.42407 -21.95358 -21.15247 -20.35467 -19.72249 -18.14162 -18.01960 -17.10611 -16.78153 -16.17881 -16.03541 -15.75713 -15.60689 -15.39884 -15.13859 -14.72345 -14.68734 -14.48994 -14.28063 -14.01257 -13.63091 -13.40356 -13.27810 -13.07863 -13.01359 -12.86298 -12.77409 -12.66327 -12.56580 -12.42465 -12.40033 -12.32681 -12.13099 -12.08200 -11.99967 -11.57462 -11.50370 -11.48138 -11.20729 -11.07497 -11.02378 -10.85822 -10.47940 -10.16887 -9.79045 -8.50861 -7.77680 -5.25118 1.41304 1.45110 1.48555 1.85537 2.47604 2.53119 3.39352 3.59084 3.65919 3.67008 3.76660 3.94033 4.00706 4.09000 4.10886 4.14892 4.19951 4.26728 4.34711 4.52176 4.66779 4.67100 4.72395 4.75538 4.78416 4.79587 4.84556 4.86589 4.91128 4.95436 4.98068 5.02125 5.06107 5.06545 5.11083 5.14405 5.17752 5.20812 5.26783 5.27424 5.33614 5.37463 5.49284 5.55907 5.58129 5.61934 5.65069 5.73809 5.79568 5.86449 6.48331 6.84492 7.23234 7.56296 7.96867 8.48644 9.26835 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010138 B = 0.007256 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.219548 B = 3858.005042 C = 5226.858149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C -0.136 4.136 4 C -0.063 4.063 5 C -0.107 4.107 6 C 0.520 3.480 7 O -0.590 6.590 8 N -0.692 5.692 9 C 0.127 3.873 10 H 0.057 0.943 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.153 3.847 14 H 0.010 0.990 15 C -0.127 4.127 16 N -0.590 5.590 17 C -0.231 4.231 18 H 0.074 0.926 19 C -0.045 4.045 20 N -0.937 5.937 21 Si 0.934 3.066 22 H -0.257 1.257 23 H -0.312 1.312 24 H -0.280 1.280 25 C 0.177 3.823 26 C -0.115 4.115 27 C -0.118 4.118 28 C -0.138 4.138 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.022 0.978 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.403 0.597 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.033 0.967 44 H 0.074 0.926 45 H 0.053 0.947 46 H 0.239 0.761 47 H 0.048 0.952 48 H -0.013 1.013 49 H 0.084 0.916 50 H 0.086 0.914 51 H 0.088 0.912 52 H 0.097 0.903 53 H 0.078 0.922 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.553 -4.929 17.673 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 C -0.193 4.193 4 C -0.100 4.100 5 C -0.110 4.110 6 C 0.308 3.692 7 O -0.472 6.472 8 N -0.343 5.343 9 C 0.020 3.980 10 H 0.075 0.925 11 C -0.148 4.148 12 C -0.156 4.156 13 C 0.048 3.952 14 H 0.027 0.973 15 C -0.184 4.184 16 N -0.314 5.314 17 C -0.361 4.361 18 H 0.091 0.909 19 C -0.240 4.240 20 N -0.584 5.584 21 Si 0.763 3.237 22 H -0.181 1.181 23 H -0.239 1.239 24 H -0.206 1.206 25 C 0.049 3.951 26 C -0.153 4.153 27 C -0.155 4.155 28 C -0.176 4.176 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.241 0.759 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.052 0.948 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.048 0.952 47 H 0.067 0.933 48 H 0.005 0.995 49 H 0.103 0.897 50 H 0.105 0.895 51 H 0.107 0.893 52 H 0.115 0.885 53 H 0.096 0.904 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.111 -4.467 17.046 17.894 hybrid contribution -0.703 1.074 -1.254 1.795 sum 2.409 -3.393 15.791 16.330 Atomic orbital electron populations 1.21988 0.95877 1.00866 1.00831 1.21271 0.95248 0.96984 0.99478 1.21740 1.00795 0.95206 1.01599 1.21149 1.00637 0.90689 0.97547 1.22269 1.00071 0.97235 0.91400 1.20918 0.79687 0.80171 0.88412 1.90586 1.37703 1.62933 1.55933 1.45781 1.44438 1.24578 1.19478 1.21418 0.97647 0.94110 0.84788 0.92516 1.21664 0.97855 0.92696 1.02628 1.21944 0.93913 1.01144 0.98574 1.20766 0.94539 0.84741 0.95181 0.97259 1.21705 0.95118 1.00950 1.00632 1.44166 1.02624 1.01103 1.83503 1.19272 1.02907 0.96231 1.17719 0.90855 1.25671 0.99910 1.02123 0.96322 1.70145 1.38563 1.26768 1.22893 0.85886 0.79065 0.80323 0.78407 1.18148 1.23922 1.20645 1.20784 0.83818 0.98777 0.91679 1.22950 0.99357 0.99537 0.93435 1.22796 0.94658 1.03106 0.94905 1.23276 0.94092 1.02514 0.97700 0.93613 0.90646 0.95847 0.93169 0.92610 0.94420 0.90788 0.88710 0.91857 0.75918 0.91328 0.89788 0.91882 0.89295 0.94772 0.90724 0.92823 0.95208 0.93341 0.99479 0.89727 0.89495 0.89295 0.88501 0.90391 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 7.24 71.98 0.52 -4.43 16 2 C -0.11 -3.87 2.60 -10.79 -0.03 -3.89 16 3 C -0.14 -4.00 9.18 71.98 0.66 -3.34 16 4 C -0.06 -1.73 3.92 30.59 0.12 -1.61 16 5 C -0.11 -2.96 0.77 -52.34 -0.04 -3.00 16 6 C 0.52 19.45 6.41 87.66 0.56 20.01 16 7 O -0.59 -27.57 13.92 -3.05 -0.04 -27.61 16 8 N -0.69 -24.13 4.79 -442.15 -2.12 -26.25 16 9 C 0.13 4.92 2.81 45.07 0.13 5.05 16 10 H 0.06 2.37 7.58 -2.39 -0.02 2.35 16 11 C -0.11 -3.26 5.59 30.64 0.17 -3.08 16 12 C -0.12 -3.28 5.21 30.70 0.16 -3.12 16 13 C 0.15 5.76 3.49 44.97 0.16 5.92 16 14 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 15 C -0.13 -4.23 7.97 71.98 0.57 -3.66 16 16 N -0.59 -27.99 2.90 -675.24 -1.96 -29.95 16 17 C -0.23 -12.09 8.55 84.03 0.72 -11.37 16 18 H 0.07 3.68 6.26 -2.91 -0.02 3.66 16 19 C -0.05 -2.58 5.01 84.86 0.43 -2.15 16 20 N -0.94 -58.17 11.11 21.65 0.24 -57.93 16 21 Si 0.93 45.88 29.57 68.60 2.03 47.91 16 22 H -0.26 -11.73 6.26 99.48 0.62 -11.11 16 23 H -0.31 -16.19 7.11 99.48 0.71 -15.48 16 24 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 25 C 0.18 8.83 4.86 86.36 0.42 9.25 16 26 C -0.12 -2.26 7.22 31.12 0.22 -2.03 16 27 C -0.12 -1.91 7.72 31.12 0.24 -1.67 16 28 C -0.14 -3.34 5.98 31.18 0.19 -3.16 16 29 H 0.04 1.83 6.13 -2.39 -0.01 1.82 16 30 H 0.07 2.14 7.70 -2.38 -0.02 2.13 16 31 H 0.02 0.91 7.71 -2.39 -0.02 0.89 16 32 H 0.05 2.29 5.42 -2.39 -0.01 2.28 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 2.02 7.32 -2.39 -0.02 2.00 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.40 12.11 4.85 -92.71 -0.45 11.66 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.06 1.69 6.40 -2.39 -0.02 1.67 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.03 1.30 7.64 -2.38 -0.02 1.28 16 44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.05 1.76 7.43 -2.39 -0.02 1.74 16 46 H 0.24 14.91 8.31 -92.72 -0.77 14.14 16 47 H 0.05 2.92 6.12 -2.39 -0.01 2.90 16 48 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 49 H 0.08 1.48 8.10 -2.39 -0.02 1.46 16 50 H 0.09 1.64 8.09 -2.39 -0.02 1.62 16 51 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.10 1.32 7.66 -2.38 -0.02 1.31 16 53 H 0.08 1.98 6.28 -2.39 -0.01 1.96 16 54 H 0.08 1.99 5.39 -2.38 -0.01 1.98 16 Total: -1.00 -71.35 391.25 3.68 -67.67 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.33 Total: 32.44 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 5.20 Total: -6.28 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -3.84 Total: -114.13 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.04 Total: -27.61 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -71.35 3.68 -67.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132169827.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.192 kcal (2) G-P(sol) polarization free energy of solvation -71.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds