Wall clock time and date at job start Tue Mar 31 2020 15:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47050 * 2 1 4 4 C 1.52999 * 109.47392 * 120.00035 * 2 1 3 5 5 C 1.53006 * 109.46629 * 64.30559 * 4 2 1 6 6 C 1.50700 * 112.84786 * 54.42497 * 5 4 2 7 7 O 1.21276 * 120.00127 * 357.80094 * 6 5 4 8 8 N 1.34779 * 119.99682 * 177.81141 * 6 5 4 9 9 C 1.46502 * 119.99680 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.50000 * 34.92405 * 9 8 6 11 11 C 1.53039 * 109.49703 * 155.00001 * 9 8 6 12 12 C 1.53038 * 109.52625 * 181.35309 * 11 9 8 13 13 C 1.53193 * 109.31291 * 298.60638 * 12 11 9 14 14 H 1.08999 * 109.71583 * 294.80151 * 13 12 11 15 15 C 1.52997 * 109.58847 * 174.43259 * 13 12 11 16 16 N 1.46931 * 108.76341 * 54.65664 * 13 12 11 17 17 C 1.36938 * 120.63455 * 126.40391 * 16 13 12 18 18 H 1.08003 * 119.99488 * 334.78703 * 17 16 13 19 19 C 1.38805 * 120.00263 * 154.78489 * 17 16 13 20 20 N 1.31613 * 120.00340 * 156.27509 * 19 17 16 21 21 Si 1.86802 * 119.99903 * 336.27542 * 19 17 16 22 22 H 1.48498 * 109.47142 * 95.23509 * 21 19 17 23 23 H 1.48508 * 109.47255 * 215.23594 * 21 19 17 24 24 H 1.48499 * 109.47408 * 335.23475 * 21 19 17 25 25 C 1.46930 * 118.73726 * 306.38711 * 16 13 12 26 26 C 1.53787 * 113.68602 * 185.68814 * 5 4 2 27 27 C 1.53780 * 87.07997 * 89.13258 * 26 5 4 28 28 C 1.53779 * 113.61825 * 283.22221 * 5 4 2 29 29 H 1.09001 * 109.47228 * 290.05371 * 1 2 3 30 30 H 1.09005 * 109.47436 * 50.05495 * 1 2 3 31 31 H 1.09005 * 109.47139 * 170.05926 * 1 2 3 32 32 H 1.08998 * 109.46890 * 240.00541 * 2 1 3 33 33 H 1.08994 * 109.47155 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.47435 * 300.00605 * 3 2 1 35 35 H 1.09006 * 109.47003 * 60.00301 * 3 2 1 36 36 H 1.09003 * 109.47198 * 304.30957 * 4 2 1 37 37 H 1.08991 * 109.47311 * 184.30573 * 4 2 1 38 38 H 0.97001 * 120.00039 * 359.97438 * 8 6 5 39 39 H 1.09007 * 109.45633 * 301.35582 * 11 9 8 40 40 H 1.08993 * 109.46512 * 61.33216 * 11 9 8 41 41 H 1.09001 * 109.50237 * 58.57308 * 12 11 9 42 42 H 1.09001 * 109.49892 * 178.67127 * 12 11 9 43 43 H 1.08994 * 109.47763 * 300.72872 * 15 13 12 44 44 H 1.09006 * 109.46983 * 60.72917 * 15 13 12 45 45 H 1.08998 * 109.47453 * 180.72274 * 15 13 12 46 46 H 0.96996 * 120.00945 * 179.97438 * 20 19 17 47 47 H 1.09004 * 109.58521 * 293.81717 * 25 16 13 48 48 H 1.09003 * 109.58684 * 173.39543 * 25 16 13 49 49 H 1.09000 * 113.60737 * 203.67960 * 26 5 4 50 50 H 1.08997 * 113.61557 * 334.58021 * 26 5 4 51 51 H 1.09005 * 113.60777 * 270.88340 * 27 26 5 52 52 H 1.08996 * 113.61759 * 139.98216 * 27 26 5 53 53 H 1.09002 * 113.61144 * 25.34615 * 28 5 4 54 54 H 1.08991 * 113.61368 * 156.17016 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6203 -2.1917 1.1961 6 6 2.0554 -2.8789 -0.0725 7 8 2.6359 -2.2522 -0.9333 8 7 1.7993 -4.1901 -0.2504 9 6 2.2228 -4.8584 -1.4835 10 1 3.1686 -4.4345 -1.8207 11 6 2.3993 -6.3553 -1.2184 12 6 2.8742 -7.0487 -2.4974 13 6 1.8164 -6.8733 -3.5915 14 1 0.9030 -7.3956 -3.3070 15 6 2.3432 -7.4425 -4.9103 16 7 1.5348 -5.4401 -3.7513 17 6 1.6220 -4.8448 -4.9814 18 1 2.2605 -5.2686 -5.7424 19 6 0.8896 -3.6967 -5.2503 20 7 1.2857 -2.8694 -6.1941 21 14 -0.6584 -3.3259 -4.2726 22 1 -0.3264 -2.4173 -3.1460 23 1 -1.6579 -2.6739 -5.1565 24 1 -1.2214 -4.5918 -3.7382 25 6 1.1576 -4.6578 -2.5661 26 6 1.9637 -2.9786 2.4720 27 6 0.5886 -2.5507 3.0115 28 6 0.1408 -2.4231 1.5459 29 1 -0.3634 0.3524 0.9654 30 1 -0.3634 0.6598 -0.7879 31 1 -0.3634 -1.0123 -0.1774 32 1 1.8932 -0.5137 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8898 35 1 1.6766 1.9563 0.8901 36 1 1.6150 -0.2539 2.1376 37 1 3.1272 -0.6549 1.2886 38 1 1.3352 -4.6915 0.4382 39 1 3.1391 -6.4998 -0.4310 40 1 1.4472 -6.7835 -0.9053 41 1 3.8139 -6.6040 -2.8250 42 1 3.0225 -8.1107 -2.3019 43 1 3.2592 -6.9225 -5.1905 44 1 2.5514 -8.5057 -4.7897 45 1 1.5943 -7.3053 -5.6903 46 1 0.7738 -2.0673 -6.3824 47 1 0.1910 -4.9991 -2.1955 48 1 1.0983 -3.6017 -2.8291 49 1 2.0546 -4.0528 2.3112 50 1 2.8012 -2.5608 3.0306 51 1 0.6059 -1.6014 3.5470 52 1 0.0704 -3.3375 3.5595 53 1 -0.4931 -1.5568 1.3570 54 1 -0.2669 -3.3447 1.1308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132169828.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:24 Heat of formation + Delta-G solvation = -23.753897 kcal Electronic energy + Delta-G solvation = -30297.537261 eV Core-core repulsion = 26655.371721 eV Total energy + Delta-G solvation = -3642.165540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.03373 -40.06031 -38.66050 -36.69810 -35.73525 -34.65413 -32.60429 -32.20925 -29.52984 -28.54311 -27.96639 -26.86511 -26.22748 -25.38448 -24.35380 -22.43286 -21.91680 -21.28400 -20.98212 -19.69262 -18.51491 -18.10443 -17.56538 -16.87698 -16.46326 -16.28535 -15.96992 -15.79955 -15.45557 -15.27396 -15.02064 -14.79857 -14.64610 -14.51324 -14.25242 -13.84246 -13.49019 -13.38446 -13.29828 -13.13569 -12.99463 -12.92105 -12.78033 -12.72713 -12.55653 -12.53511 -12.45487 -12.13357 -12.05203 -11.76908 -11.75500 -11.57219 -11.54727 -11.36360 -11.33462 -11.13463 -10.81051 -10.75701 -10.21918 -10.08992 -8.94173 -8.19496 -5.44704 1.23203 1.26696 1.36435 1.64270 2.16198 2.38408 3.01776 3.32862 3.53878 3.61687 3.63803 3.78869 3.89278 4.00824 4.01576 4.09474 4.11538 4.19672 4.25233 4.28519 4.38414 4.57448 4.62208 4.65152 4.69354 4.74926 4.76157 4.80483 4.84261 4.85321 4.86885 4.92728 4.94431 4.96918 4.98682 5.01762 5.10127 5.12586 5.14352 5.16335 5.21721 5.24889 5.32252 5.42123 5.47387 5.48482 5.51721 5.62480 5.71034 5.86941 6.14477 6.62734 6.90034 7.38372 7.64106 8.01842 8.99815 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012642 B = 0.005153 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.317338 B = 5432.639281 C = 6736.469388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C -0.137 4.137 4 C -0.064 4.064 5 C -0.110 4.110 6 C 0.511 3.489 7 O -0.579 6.579 8 N -0.713 5.713 9 C 0.138 3.862 10 H 0.050 0.950 11 C -0.107 4.107 12 C -0.120 4.120 13 C 0.157 3.843 14 H 0.047 0.953 15 C -0.132 4.132 16 N -0.613 5.613 17 C -0.235 4.235 18 H 0.071 0.929 19 C -0.037 4.037 20 N -0.953 5.953 21 Si 0.935 3.065 22 H -0.299 1.299 23 H -0.312 1.312 24 H -0.256 1.256 25 C 0.124 3.876 26 C -0.118 4.118 27 C -0.117 4.117 28 C -0.148 4.148 29 H 0.083 0.917 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.412 0.588 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.103 0.897 43 H 0.036 0.964 44 H 0.085 0.915 45 H 0.038 0.962 46 H 0.256 0.744 47 H 0.031 0.969 48 H 0.032 0.968 49 H 0.094 0.906 50 H 0.084 0.916 51 H 0.096 0.904 52 H 0.091 0.909 53 H 0.090 0.910 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.409 -4.057 24.700 25.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.195 4.195 4 C -0.102 4.102 5 C -0.113 4.113 6 C 0.299 3.701 7 O -0.458 6.458 8 N -0.365 5.365 9 C 0.031 3.969 10 H 0.068 0.932 11 C -0.144 4.144 12 C -0.159 4.159 13 C 0.053 3.947 14 H 0.064 0.936 15 C -0.190 4.190 16 N -0.338 5.338 17 C -0.365 4.365 18 H 0.089 0.911 19 C -0.231 4.231 20 N -0.600 5.600 21 Si 0.766 3.234 22 H -0.228 1.228 23 H -0.241 1.241 24 H -0.180 1.180 25 C -0.002 4.002 26 C -0.156 4.156 27 C -0.154 4.154 28 C -0.185 4.185 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.250 0.750 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.122 0.878 43 H 0.055 0.945 44 H 0.104 0.896 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.048 0.952 48 H 0.050 0.950 49 H 0.112 0.888 50 H 0.102 0.898 51 H 0.115 0.885 52 H 0.109 0.891 53 H 0.108 0.892 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.025 -3.542 23.993 24.274 hybrid contribution -0.818 0.784 -0.731 1.349 sum -1.843 -2.758 23.262 23.497 Atomic orbital electron populations 1.22084 0.95481 1.00712 1.02030 1.21434 0.95975 0.96941 0.99936 1.21745 1.00558 0.95340 1.01815 1.21151 1.00363 0.90733 0.97905 1.22318 1.00101 0.97108 0.91773 1.21316 0.77817 0.82018 0.88925 1.90650 1.43331 1.64907 1.46895 1.45948 1.60270 1.10017 1.20274 1.21305 0.97017 0.94607 0.83971 0.93193 1.21667 1.03173 0.90930 0.98667 1.21966 0.98130 1.01562 0.94277 1.20888 0.96243 0.82183 0.95428 0.93568 1.21770 1.00098 1.00342 0.96778 1.44594 1.81154 1.05410 1.02643 1.18952 1.19258 1.07004 0.91308 0.91128 1.25775 1.01524 0.97580 0.98236 1.69985 1.40218 1.12519 1.37283 0.86042 0.82395 0.77842 0.77143 1.22757 1.24103 1.17972 1.21559 0.95845 0.94799 0.88045 1.23033 0.99569 1.00040 0.92966 1.22784 0.94912 1.03149 0.94538 1.23472 0.93225 1.03468 0.98329 0.89814 0.94440 0.93711 0.92454 0.93327 0.94003 0.90672 0.88319 0.92545 0.75008 0.89239 0.89734 0.93462 0.87847 0.94464 0.89617 0.94248 0.93467 0.95154 0.94970 0.88771 0.89772 0.88534 0.89086 0.89182 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 7.55 71.98 0.54 -3.44 16 2 C -0.12 -3.75 2.66 -10.79 -0.03 -3.77 16 3 C -0.14 -3.55 9.18 71.98 0.66 -2.89 16 4 C -0.06 -1.51 3.98 30.60 0.12 -1.39 16 5 C -0.11 -2.53 0.78 -52.40 -0.04 -2.57 16 6 C 0.51 17.22 6.80 87.66 0.60 17.82 16 7 O -0.58 -26.51 13.30 -3.02 -0.04 -26.55 16 8 N -0.71 -20.94 4.68 -442.16 -2.07 -23.00 16 9 C 0.14 4.99 2.60 45.07 0.12 5.10 16 10 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 11 C -0.11 -2.75 5.35 30.62 0.16 -2.58 16 12 C -0.12 -3.43 5.37 30.67 0.16 -3.26 16 13 C 0.16 5.76 3.50 44.97 0.16 5.92 16 14 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 15 C -0.13 -4.72 7.92 71.98 0.57 -4.15 16 16 N -0.61 -29.61 2.79 -675.20 -1.88 -31.50 16 17 C -0.24 -13.84 9.12 84.03 0.77 -13.08 16 18 H 0.07 4.39 6.27 -2.91 -0.02 4.37 16 19 C -0.04 -2.31 5.18 84.86 0.44 -1.87 16 20 N -0.95 -64.17 13.97 21.65 0.30 -63.87 16 21 Si 0.93 51.12 24.40 68.60 1.67 52.80 16 22 H -0.30 -16.75 6.68 99.48 0.66 -16.09 16 23 H -0.31 -17.17 7.11 99.48 0.71 -16.46 16 24 H -0.26 -12.96 6.66 99.48 0.66 -12.29 16 25 C 0.12 5.67 3.80 86.36 0.33 6.00 16 26 C -0.12 -1.74 7.08 31.12 0.22 -1.52 16 27 C -0.12 -1.32 7.73 31.12 0.24 -1.08 16 28 C -0.15 -2.69 5.96 31.12 0.19 -2.51 16 29 H 0.08 1.66 7.63 -2.39 -0.02 1.65 16 30 H 0.04 1.08 8.11 -2.38 -0.02 1.06 16 31 H 0.04 1.34 5.77 -2.38 -0.01 1.32 16 32 H 0.06 2.40 5.16 -2.39 -0.01 2.39 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.10 1.66 7.30 -2.39 -0.02 1.64 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.41 8.47 6.92 -92.71 -0.64 7.83 16 39 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.04 1.46 7.48 -2.39 -0.02 1.44 16 44 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 45 H 0.04 1.57 7.57 -2.39 -0.02 1.55 16 46 H 0.26 16.63 8.31 -92.71 -0.77 15.86 16 47 H 0.03 1.32 7.16 -2.39 -0.02 1.31 16 48 H 0.03 1.78 4.48 -2.39 -0.01 1.77 16 49 H 0.09 1.20 7.08 -2.39 -0.02 1.18 16 50 H 0.08 1.11 8.10 -2.39 -0.02 1.10 16 51 H 0.10 0.89 7.61 -2.38 -0.02 0.87 16 52 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 53 H 0.09 1.70 4.60 -2.39 -0.01 1.69 16 54 H 0.08 1.51 7.36 -2.39 -0.02 1.49 16 Total: -1.00 -81.83 388.21 3.33 -78.50 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.14 Total: 22.90 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 5.21 Total: -9.28 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -3.65 Total: -118.37 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.04 Total: -26.55 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 1.67 Total: 52.80 kcal Total: -81.83 3.33 -78.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132169828.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.744 kcal (2) G-P(sol) polarization free energy of solvation -81.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds