Wall clock time and date at job start Tue Mar 31 2020 15:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47381 * 2 1 4 4 C 1.52997 * 109.47220 * 119.99875 * 2 1 3 5 5 C 1.53003 * 109.46903 * 66.88816 * 4 2 1 6 6 C 1.50707 * 112.84797 * 66.44100 * 5 4 2 7 7 O 1.21289 * 119.99527 * 225.66091 * 6 5 4 8 8 N 1.34773 * 120.00153 * 45.66015 * 6 5 4 9 9 C 1.46497 * 119.99902 * 185.13252 * 8 6 5 10 10 H 1.09007 * 109.49874 * 325.00204 * 9 8 6 11 11 C 1.53046 * 109.49748 * 204.93760 * 9 8 6 12 12 C 1.53042 * 109.53686 * 178.68232 * 11 9 8 13 13 C 1.53192 * 109.31364 * 61.36574 * 12 11 9 14 14 H 1.09001 * 109.58721 * 65.29050 * 13 12 11 15 15 C 1.52995 * 109.58883 * 185.57477 * 13 12 11 16 16 N 1.46931 * 108.77541 * 305.36332 * 13 12 11 17 17 C 1.36937 * 120.63024 * 233.61169 * 16 13 12 18 18 H 1.08000 * 120.00139 * 31.11434 * 17 16 13 19 19 C 1.38817 * 119.99672 * 211.11276 * 17 16 13 20 20 N 1.31620 * 120.00248 * 10.71639 * 19 17 16 21 21 Si 1.86797 * 119.99726 * 190.71163 * 19 17 16 22 22 H 1.48494 * 109.46973 * 90.00290 * 21 19 17 23 23 H 1.48499 * 109.46991 * 210.00047 * 21 19 17 24 24 H 1.48494 * 109.47245 * 330.00325 * 21 19 17 25 25 C 1.46931 * 118.76451 * 53.58596 * 16 13 12 26 26 C 1.53775 * 113.61685 * 295.24453 * 5 4 2 27 27 C 1.53788 * 87.08345 * 219.93587 * 26 5 4 28 28 C 1.53783 * 87.17010 * 25.38630 * 27 26 5 29 29 H 1.09005 * 109.47007 * 52.02962 * 1 2 3 30 30 H 1.08994 * 109.47422 * 172.03128 * 1 2 3 31 31 H 1.09003 * 109.46792 * 292.03479 * 1 2 3 32 32 H 1.09007 * 109.46847 * 239.99934 * 2 1 3 33 33 H 1.08998 * 109.47196 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46884 * 299.99854 * 3 2 1 35 35 H 1.08993 * 109.47698 * 60.00030 * 3 2 1 36 36 H 1.08998 * 109.47333 * 306.89253 * 4 2 1 37 37 H 1.08995 * 109.47569 * 186.88469 * 4 2 1 38 38 H 0.96995 * 119.99961 * 5.13736 * 8 6 5 39 39 H 1.08995 * 109.45597 * 298.70447 * 11 9 8 40 40 H 1.08993 * 109.45801 * 58.66408 * 11 9 8 41 41 H 1.08997 * 109.49368 * 181.31541 * 12 11 9 42 42 H 1.09001 * 109.50034 * 301.41528 * 12 11 9 43 43 H 1.09005 * 109.46791 * 59.99916 * 15 13 12 44 44 H 1.08997 * 109.47225 * 179.97438 * 15 13 12 45 45 H 1.08995 * 109.47212 * 300.00239 * 15 13 12 46 46 H 0.96993 * 120.00323 * 179.97438 * 20 19 17 47 47 H 1.08996 * 109.62000 * 186.64414 * 25 16 13 48 48 H 1.09004 * 109.56190 * 66.21371 * 25 16 13 49 49 H 1.08994 * 113.62153 * 105.38734 * 26 5 4 50 50 H 1.09001 * 113.69162 * 334.48986 * 26 5 4 51 51 H 1.08992 * 113.61542 * 139.97827 * 27 26 5 52 52 H 1.08999 * 113.60807 * 270.79995 * 27 26 5 53 53 H 1.09000 * 113.61056 * 89.16130 * 28 27 26 54 54 H 1.09001 * 113.61468 * 220.05906 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6761 -2.2050 1.1657 6 6 2.3979 -2.9229 0.0545 7 8 1.7890 -3.6727 -0.6791 8 7 3.7200 -2.7317 -0.1242 9 6 4.3997 -3.3398 -1.2707 10 1 3.9535 -4.3111 -1.4849 11 6 5.8847 -3.5201 -0.9474 12 6 6.5893 -4.1854 -2.1319 13 6 6.4688 -3.2838 -3.3646 14 1 7.0149 -2.3561 -3.1936 15 6 7.0484 -4.0027 -4.5844 16 7 5.0486 -2.9871 -3.5964 17 6 4.4760 -3.2265 -4.8171 18 1 4.8349 -4.0386 -5.4319 19 6 3.4343 -2.4252 -5.2642 20 7 3.1357 -1.3154 -4.6228 21 14 2.4565 -2.9222 -6.7762 22 1 1.3036 -3.7632 -6.3657 23 1 1.9601 -1.7048 -7.4668 24 1 3.3285 -3.6935 -7.6981 25 6 4.2537 -2.4292 -2.4938 26 6 0.1616 -2.4701 1.1886 27 6 0.4658 -3.6760 2.0933 28 6 1.7461 -2.9375 2.5180 29 1 -0.3633 0.6323 -0.8102 30 1 -0.3634 -1.0177 -0.1425 31 1 -0.3633 0.3856 0.9526 32 1 1.8933 -0.5139 -0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6768 1.9564 0.8899 36 1 1.5795 -0.2835 2.1349 37 1 3.1229 -0.6158 1.3130 38 1 4.2215 -2.1915 0.5063 39 1 6.3356 -2.5462 -0.7569 40 1 5.9901 -4.1481 -0.0628 41 1 7.6420 -4.3346 -1.8918 42 1 6.1227 -5.1485 -2.3386 43 1 6.4977 -4.9275 -4.7567 44 1 6.9612 -3.3599 -5.4603 45 1 8.0985 -4.2331 -4.4054 46 1 2.4081 -0.7554 -4.9353 47 1 3.2054 -2.3777 -2.7879 48 1 4.6167 -1.4304 -2.2511 49 1 -0.2483 -2.7457 0.2170 50 1 -0.4127 -1.6870 1.6835 51 1 -0.2521 -3.8064 2.9030 52 1 0.6555 -4.5976 1.5431 53 1 1.6070 -2.2816 3.3775 54 1 2.6136 -3.5898 2.6181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132169829.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:29 Heat of formation + Delta-G solvation = -33.904524 kcal Electronic energy + Delta-G solvation = -30252.846504 eV Core-core repulsion = 26610.240800 eV Total energy + Delta-G solvation = -3642.605704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.94469 -39.82779 -38.40256 -36.45870 -35.84304 -34.66321 -32.34217 -31.73951 -29.71297 -28.47821 -27.74109 -26.78965 -26.13370 -24.88440 -23.98758 -22.91274 -21.89250 -21.13070 -20.70958 -19.86759 -18.34120 -17.62966 -17.34203 -16.88743 -16.57510 -16.03441 -15.70115 -15.58069 -15.33384 -15.16720 -14.95635 -14.77436 -14.58212 -14.37367 -14.08431 -13.57184 -13.47167 -13.19635 -13.14247 -13.05102 -12.82385 -12.77116 -12.72287 -12.70852 -12.57892 -12.33065 -12.31239 -12.11949 -12.01099 -11.88179 -11.66214 -11.58065 -11.41642 -11.40307 -11.17212 -11.08140 -10.73209 -10.58770 -10.54506 -9.99423 -8.59987 -7.85024 -5.35112 1.37376 1.41694 1.47753 1.71787 2.26622 2.48463 3.30695 3.47781 3.58470 3.65625 3.77400 3.91430 3.95271 4.03598 4.07783 4.09747 4.24229 4.27738 4.37460 4.38990 4.59107 4.62332 4.70088 4.76804 4.79439 4.80079 4.85398 4.85686 4.86987 4.88937 4.99193 5.01031 5.03149 5.04639 5.05052 5.09780 5.16670 5.17692 5.29149 5.31018 5.34882 5.39024 5.48698 5.51023 5.53387 5.55645 5.57151 5.60762 5.68701 5.82780 6.41494 6.70432 7.15664 7.41916 7.88969 8.38583 9.18574 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011549 B = 0.004843 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.942667 B = 5779.775923 C = 6781.786633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.100 4.100 3 C -0.137 4.137 4 C -0.085 4.085 5 C -0.108 4.108 6 C 0.530 3.470 7 O -0.591 6.591 8 N -0.707 5.707 9 C 0.130 3.870 10 H 0.044 0.956 11 C -0.107 4.107 12 C -0.118 4.118 13 C 0.154 3.846 14 H 0.022 0.978 15 C -0.128 4.128 16 N -0.604 5.604 17 C -0.250 4.250 18 H 0.072 0.928 19 C -0.052 4.052 20 N -0.930 5.930 21 Si 0.955 3.045 22 H -0.298 1.298 23 H -0.293 1.293 24 H -0.261 1.261 25 C 0.188 3.812 26 C -0.115 4.115 27 C -0.146 4.146 28 C -0.102 4.102 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.020 0.980 33 H 0.050 0.950 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.409 0.591 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.049 0.951 43 H 0.044 0.956 44 H 0.038 0.962 45 H 0.079 0.921 46 H 0.243 0.757 47 H 0.041 0.959 48 H -0.005 1.005 49 H 0.042 0.958 50 H 0.119 0.881 51 H 0.093 0.907 52 H 0.050 0.950 53 H 0.128 0.872 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 1.272 19.286 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.119 4.119 3 C -0.195 4.195 4 C -0.122 4.122 5 C -0.111 4.111 6 C 0.318 3.682 7 O -0.471 6.471 8 N -0.358 5.358 9 C 0.024 3.976 10 H 0.062 0.938 11 C -0.145 4.145 12 C -0.157 4.157 13 C 0.048 3.952 14 H 0.040 0.960 15 C -0.186 4.186 16 N -0.328 5.328 17 C -0.381 4.381 18 H 0.090 0.910 19 C -0.248 4.248 20 N -0.576 5.576 21 Si 0.784 3.216 22 H -0.225 1.225 23 H -0.219 1.219 24 H -0.185 1.185 25 C 0.060 3.940 26 C -0.152 4.152 27 C -0.183 4.183 28 C -0.139 4.139 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.092 0.908 38 H 0.246 0.754 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.098 0.902 46 H 0.052 0.948 47 H 0.059 0.941 48 H 0.013 0.987 49 H 0.061 0.939 50 H 0.137 0.863 51 H 0.112 0.888 52 H 0.069 0.931 53 H 0.146 0.854 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.119 0.858 18.674 18.727 hybrid contribution -0.720 0.141 -1.618 1.777 sum 0.399 0.999 17.056 17.089 Atomic orbital electron populations 1.22192 0.94880 1.01965 1.02156 1.21047 0.96650 0.96693 0.97508 1.21747 1.00718 0.95108 1.01899 1.21602 1.01749 0.90452 0.98379 1.22075 0.97565 0.96557 0.94922 1.20695 0.82158 0.80525 0.84845 1.90682 1.67543 1.39775 1.49073 1.45843 1.08806 1.53295 1.27850 1.21495 0.93531 0.96258 0.86362 0.93756 1.21636 0.92066 1.01866 0.98911 1.21955 1.00992 0.98339 0.94448 1.20801 0.84192 0.95328 0.94841 0.96017 1.21724 1.00018 0.99497 0.97349 1.44307 1.05139 1.75006 1.08344 1.19451 1.14590 1.08738 0.95323 0.91023 1.25854 1.02487 0.95574 1.00841 1.70135 1.31304 1.13654 1.42504 0.85432 0.78934 0.76853 0.80336 1.22538 1.21921 1.18503 1.20693 0.95974 0.91561 0.85729 1.23049 0.93630 0.98979 0.99579 1.22850 0.98929 0.96878 0.99635 1.22975 0.98042 0.98518 0.94360 0.94486 0.92533 0.89778 0.96160 0.93087 0.94415 0.90120 0.87333 0.90846 0.75412 0.90888 0.89831 0.88569 0.93187 0.93729 0.94319 0.90231 0.94795 0.94083 0.98720 0.93948 0.86302 0.88823 0.93126 0.85391 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 7.78 71.98 0.56 -3.41 16 2 C -0.10 -2.80 2.84 -10.80 -0.03 -2.83 16 3 C -0.14 -3.36 9.18 71.98 0.66 -2.70 16 4 C -0.08 -1.75 4.13 30.59 0.13 -1.62 16 5 C -0.11 -2.70 0.85 -52.34 -0.04 -2.75 16 6 C 0.53 19.35 5.82 87.66 0.51 19.86 16 7 O -0.59 -28.53 15.25 -3.06 -0.05 -28.58 16 8 N -0.71 -23.69 4.92 -442.14 -2.18 -25.87 16 9 C 0.13 5.26 2.65 45.07 0.12 5.38 16 10 H 0.04 2.12 7.51 -2.38 -0.02 2.11 16 11 C -0.11 -3.27 5.36 30.62 0.16 -3.11 16 12 C -0.12 -3.79 5.37 30.67 0.16 -3.62 16 13 C 0.15 6.25 3.50 44.97 0.16 6.41 16 14 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 15 C -0.13 -4.73 7.96 71.98 0.57 -4.16 16 16 N -0.60 -31.31 2.99 -675.21 -2.02 -33.33 16 17 C -0.25 -14.35 8.56 84.03 0.72 -13.63 16 18 H 0.07 3.97 6.25 -2.91 -0.02 3.95 16 19 C -0.05 -3.12 5.05 84.86 0.43 -2.69 16 20 N -0.93 -58.49 11.03 21.65 0.24 -58.25 16 21 Si 0.96 48.51 29.57 68.60 2.03 50.54 16 22 H -0.30 -15.48 7.11 99.48 0.71 -14.77 16 23 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 24 H -0.26 -12.31 7.11 99.48 0.71 -11.61 16 25 C 0.19 9.64 4.83 86.36 0.42 10.05 16 26 C -0.12 -2.85 4.47 31.12 0.14 -2.71 16 27 C -0.15 -3.21 7.71 31.12 0.24 -2.97 16 28 C -0.10 -1.81 7.23 31.18 0.23 -1.59 16 29 H 0.04 1.01 8.13 -2.38 -0.02 0.99 16 30 H 0.06 1.62 4.63 -2.39 -0.01 1.61 16 31 H 0.08 1.54 7.88 -2.39 -0.02 1.52 16 32 H 0.02 0.80 7.41 -2.38 -0.02 0.78 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.11 1.48 8.02 -2.39 -0.02 1.46 16 37 H 0.07 1.39 7.09 -2.39 -0.02 1.37 16 38 H 0.41 10.45 7.53 -92.71 -0.70 9.75 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 40 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.10 2.35 8.14 -2.39 -0.02 2.34 16 42 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.04 1.70 7.39 -2.38 -0.02 1.68 16 44 H 0.04 1.57 7.68 -2.39 -0.02 1.55 16 45 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.24 15.06 8.31 -92.71 -0.77 14.29 16 47 H 0.04 2.55 6.09 -2.39 -0.01 2.54 16 48 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 49 H 0.04 1.41 6.58 -2.39 -0.02 1.39 16 50 H 0.12 2.17 6.85 -2.39 -0.02 2.15 16 51 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 52 H 0.05 1.45 7.95 -2.39 -0.02 1.43 16 53 H 0.13 1.36 8.04 -2.39 -0.02 1.34 16 54 H 0.07 1.25 8.09 -2.39 -0.02 1.23 16 Total: -1.00 -78.06 399.36 3.32 -74.74 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.16 Total: 26.84 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 5.13 Total: -6.09 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -3.95 Total: -117.45 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.05 Total: -28.58 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -78.06 3.32 -74.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132169829.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.836 kcal (2) G-P(sol) polarization free energy of solvation -78.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds