Wall clock time and date at job start Tue Mar 31 2020 15:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.58655 * 2 1 4 4 C 1.53193 * 109.70320 * 239.64388 * 2 1 3 5 5 C 1.53044 * 109.33567 * 185.52067 * 4 2 1 6 6 C 1.53038 * 109.53656 * 61.31992 * 5 4 2 7 7 H 1.09000 * 109.50253 * 58.64789 * 6 5 4 8 8 N 1.46505 * 109.49639 * 178.71457 * 6 5 4 9 9 C 1.34778 * 119.99713 * 204.93502 * 8 6 5 10 10 O 1.21281 * 120.00365 * 359.97438 * 9 8 6 11 11 C 1.50708 * 119.99847 * 179.97438 * 9 8 6 12 12 C 1.52998 * 109.47017 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47077 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47084 * 64.99865 * 13 12 11 15 15 C 1.53001 * 109.46770 * 180.02562 * 14 13 12 16 16 C 1.52991 * 109.47371 * 299.99740 * 15 14 13 17 17 C 1.53000 * 109.46961 * 60.00377 * 16 15 14 18 18 C 1.53002 * 109.47145 * 185.00242 * 13 12 11 19 19 C 1.53192 * 109.34100 * 298.67924 * 6 5 4 20 20 N 1.46924 * 108.77283 * 54.62027 * 19 6 5 21 21 C 1.36935 * 120.63177 * 126.41925 * 20 19 6 22 22 H 1.07996 * 120.00056 * 209.01104 * 21 20 19 23 23 C 1.38820 * 119.99699 * 29.01320 * 21 20 19 24 24 N 1.31614 * 119.99997 * 15.01850 * 23 21 20 25 25 Si 1.86799 * 119.99569 * 195.02225 * 23 21 20 26 26 H 1.48499 * 109.47182 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47079 * 119.99672 * 25 23 21 28 28 H 1.48503 * 109.47218 * 239.99676 * 25 23 21 29 29 H 1.09004 * 109.47329 * 299.72123 * 1 2 3 30 30 H 1.09001 * 109.47222 * 59.71612 * 1 2 3 31 31 H 1.08993 * 109.47163 * 179.71541 * 1 2 3 32 32 H 1.08999 * 109.49678 * 305.45570 * 4 2 1 33 33 H 1.08996 * 109.49847 * 65.52764 * 4 2 1 34 34 H 1.08995 * 109.43510 * 301.31041 * 5 4 2 35 35 H 1.09001 * 109.48289 * 181.34975 * 5 4 2 36 36 H 0.96996 * 120.00024 * 24.92783 * 8 6 5 37 37 H 1.08996 * 109.46800 * 60.00073 * 11 9 8 38 38 H 1.08996 * 109.47019 * 299.99847 * 11 9 8 39 39 H 1.09002 * 109.47148 * 60.00010 * 12 11 9 40 40 H 1.09005 * 109.47078 * 299.99667 * 12 11 9 41 41 H 1.09003 * 109.46912 * 304.99704 * 13 12 11 42 42 H 1.08994 * 109.47125 * 60.00172 * 14 13 12 43 43 H 1.08997 * 109.46974 * 300.00029 * 14 13 12 44 44 H 1.09008 * 109.46838 * 179.97438 * 15 14 13 45 45 H 1.08997 * 109.47000 * 60.00494 * 15 14 13 46 46 H 1.09000 * 109.47697 * 179.97438 * 16 15 14 47 47 H 1.09005 * 109.47509 * 300.00133 * 16 15 14 48 48 H 1.08994 * 109.47125 * 60.00031 * 17 16 15 49 49 H 1.09009 * 109.47230 * 180.02562 * 17 16 15 50 50 H 1.08993 * 109.47085 * 59.99760 * 18 13 12 51 51 H 1.09003 * 109.46776 * 299.99545 * 18 13 12 52 52 H 1.08994 * 109.59231 * 174.41306 * 19 6 5 53 53 H 1.09011 * 109.58509 * 294.69358 * 19 6 5 54 54 H 0.97008 * 119.99349 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2445 5 6 3.5706 -0.8449 -1.1678 6 6 3.9602 -1.6607 0.0671 7 1 3.5041 -2.6490 0.0091 8 7 5.4178 -1.7973 0.1229 9 6 5.9725 -2.8377 0.7759 10 8 5.2652 -3.6605 1.3176 11 6 7.4719 -2.9785 0.8328 12 6 7.8364 -4.2337 1.6281 13 6 9.3586 -4.3764 1.6865 14 6 9.9502 -3.2091 2.4791 15 6 11.4725 -3.3514 2.5370 16 6 11.8357 -4.6697 3.2230 17 6 11.2441 -5.8371 2.4304 18 6 9.7213 -5.6948 2.3729 19 6 3.4654 -0.9424 1.3265 20 7 2.0225 -0.6980 1.1953 21 6 1.1534 -1.1125 2.1690 22 1 0.1365 -1.3691 1.9114 23 6 1.5795 -1.2026 3.4871 24 7 2.7011 -0.6219 3.8573 25 14 0.5609 -2.1482 4.7352 26 1 -0.6462 -2.7023 4.0711 27 1 1.3715 -3.2587 5.2963 28 1 0.1473 -1.2347 5.8306 29 1 -0.3634 0.5095 0.8925 30 1 -0.3634 0.5182 -0.8874 31 1 -0.3633 -1.0276 -0.0051 32 1 1.6080 -1.7257 -1.2905 33 1 1.7684 -0.1675 -2.1365 34 1 4.0071 0.1513 -1.0975 35 1 3.9429 -1.3420 -2.0636 36 1 5.9835 -1.1390 -0.3101 37 1 7.9008 -2.1029 1.3201 38 1 7.8678 -3.0615 -0.1793 39 1 7.4074 -5.1096 1.1413 40 1 7.4406 -4.1502 2.6403 41 1 9.7632 -4.3704 0.6743 42 1 9.5456 -3.2151 3.4912 43 1 9.6918 -2.2699 1.9901 44 1 11.8940 -2.5195 3.1013 45 1 11.8766 -3.3451 1.5247 46 1 12.9202 -4.7715 3.2639 47 1 11.4315 -4.6760 4.2354 48 1 11.6484 -5.8308 1.4182 49 1 11.5025 -6.7764 2.9195 50 1 9.2999 -6.5264 1.8082 51 1 9.3168 -5.7008 3.3850 52 1 3.6524 -1.5664 2.2004 53 1 3.9904 0.0066 1.4360 54 1 2.9989 -0.6853 4.7783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132464482.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:01 Heat of formation + Delta-G solvation = -81.352140 kcal Electronic energy + Delta-G solvation = -28428.167949 eV Core-core repulsion = 24783.504762 eV Total energy + Delta-G solvation = -3644.663187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.99803 -39.71243 -39.08641 -35.98526 -34.77213 -34.65541 -32.33207 -31.74942 -31.60617 -30.17055 -27.74870 -26.82932 -25.21724 -23.98231 -23.43104 -22.36738 -21.68500 -21.24354 -20.69906 -20.57626 -18.34966 -18.00028 -17.32837 -16.71950 -16.52404 -16.17158 -15.75532 -15.44602 -15.26089 -15.09688 -15.01849 -14.84049 -14.72144 -14.42966 -14.11623 -14.07293 -13.50783 -13.46817 -13.09172 -12.95635 -12.80055 -12.73191 -12.69639 -12.56502 -12.48331 -12.27906 -12.11265 -12.02315 -11.96844 -11.96137 -11.66282 -11.65549 -11.41052 -11.28716 -11.14006 -10.93873 -10.77887 -10.66480 -10.55592 -10.00793 -8.63255 -7.86165 -5.32154 1.38277 1.42743 1.50662 1.77301 2.31013 2.50054 3.30185 3.63082 3.76205 3.78239 3.83644 3.96139 4.04236 4.09344 4.17344 4.22119 4.28817 4.39246 4.44206 4.49983 4.60264 4.60850 4.65506 4.68657 4.70785 4.70985 4.77000 4.83272 4.85099 4.89654 5.00202 5.02121 5.06613 5.11240 5.18611 5.19978 5.26003 5.30685 5.31280 5.35962 5.36092 5.39471 5.45134 5.52268 5.53821 5.55420 5.61924 5.66743 5.69419 5.82823 6.40616 6.72323 7.15194 7.45013 7.89696 8.38354 9.18727 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014367 B = 0.002929 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.473649 B = 9556.224688 C =10833.749347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.130 3.870 7 H 0.045 0.955 8 N -0.712 5.712 9 C 0.497 3.503 10 O -0.595 6.595 11 C -0.126 4.126 12 C -0.096 4.096 13 C -0.076 4.076 14 C -0.121 4.121 15 C -0.116 4.116 16 C -0.122 4.122 17 C -0.115 4.115 18 C -0.119 4.119 19 C 0.180 3.820 20 N -0.604 5.604 21 C -0.248 4.248 22 H 0.075 0.925 23 C -0.055 4.055 24 N -0.933 5.933 25 Si 0.956 3.044 26 H -0.262 1.262 27 H -0.302 1.302 28 H -0.287 1.287 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.414 0.586 37 H 0.110 0.890 38 H 0.127 0.873 39 H 0.054 0.946 40 H 0.036 0.964 41 H 0.089 0.911 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.050 0.950 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.060 0.940 51 H 0.046 0.954 52 H 0.041 0.959 53 H -0.004 1.004 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.664 -3.335 -11.707 21.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.023 3.977 7 H 0.064 0.936 8 N -0.364 5.364 9 C 0.285 3.715 10 O -0.476 6.476 11 C -0.166 4.166 12 C -0.134 4.134 13 C -0.094 4.094 14 C -0.158 4.158 15 C -0.153 4.153 16 C -0.160 4.160 17 C -0.152 4.152 18 C -0.156 4.156 19 C 0.053 3.947 20 N -0.329 5.329 21 C -0.379 4.379 22 H 0.092 0.908 23 C -0.250 4.250 24 N -0.580 5.580 25 Si 0.785 3.215 26 H -0.186 1.186 27 H -0.229 1.229 28 H -0.214 1.214 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.250 0.750 37 H 0.128 0.872 38 H 0.145 0.855 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.081 0.919 50 H 0.079 0.921 51 H 0.065 0.935 52 H 0.059 0.941 53 H 0.014 0.986 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.186 -3.894 -11.189 20.874 hybrid contribution -0.552 -0.201 1.459 1.573 sum 16.634 -4.096 -9.730 19.701 Atomic orbital electron populations 1.21734 0.94778 1.01091 1.01091 1.20812 0.94283 0.93399 0.86742 0.96027 1.21951 0.94768 1.00761 0.98303 1.21635 0.96938 0.99988 0.95871 1.21455 0.79984 0.98729 0.97485 0.93639 1.45960 1.07333 1.27463 1.55596 1.21651 0.92581 0.80380 0.76843 1.90713 1.65677 1.44323 1.46859 1.21748 0.88775 1.01344 1.04709 1.21328 0.96247 0.96664 0.99210 1.21116 0.92741 0.95122 1.00409 1.21687 0.96044 0.98319 0.99751 1.21518 0.95041 0.97357 1.01422 1.21564 1.00644 0.94885 0.98865 1.21517 0.94399 0.98295 1.00999 1.21611 0.96740 0.97110 1.00163 1.20761 0.83620 0.95187 0.95106 1.44348 1.02580 1.65751 1.20183 1.19518 0.95211 1.36410 0.86752 0.90784 1.25795 0.99086 1.01171 0.98990 1.70166 1.25132 1.46409 1.16315 0.85365 0.78612 0.78037 0.79524 1.18649 1.22936 1.21400 0.94322 0.90194 0.93655 0.93132 0.88570 0.90819 0.89630 0.74956 0.87217 0.85541 0.92712 0.94459 0.89320 0.93703 0.90958 0.91813 0.90901 0.91114 0.93115 0.91048 0.91857 0.92093 0.93527 0.94064 0.98560 0.94737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 7.95 71.98 0.57 -4.15 16 2 C 0.15 6.16 3.49 44.97 0.16 6.31 16 3 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.12 -3.73 5.38 30.67 0.16 -3.56 16 5 C -0.11 -3.15 5.36 30.62 0.16 -2.99 16 6 C 0.13 5.14 2.60 45.07 0.12 5.26 16 7 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 8 N -0.71 -22.66 5.08 -442.15 -2.25 -24.91 16 9 C 0.50 17.42 7.80 87.66 0.68 18.10 16 10 O -0.60 -28.32 15.65 -3.03 -0.05 -28.37 16 11 C -0.13 -2.88 5.46 29.85 0.16 -2.72 16 12 C -0.10 -2.43 3.97 30.59 0.12 -2.31 16 13 C -0.08 -1.37 2.19 -10.79 -0.02 -1.40 16 14 C -0.12 -2.11 4.96 30.59 0.15 -1.96 16 15 C -0.12 -1.64 5.92 30.59 0.18 -1.45 16 16 C -0.12 -1.75 5.92 30.59 0.18 -1.56 16 17 C -0.11 -1.66 5.92 30.61 0.18 -1.48 16 18 C -0.12 -2.19 5.21 30.61 0.16 -2.03 16 19 C 0.18 9.21 4.86 86.36 0.42 9.63 16 20 N -0.60 -31.20 2.99 -675.22 -2.02 -33.22 16 21 C -0.25 -14.19 8.60 84.04 0.72 -13.47 16 22 H 0.07 4.08 6.21 -2.91 -0.02 4.07 16 23 C -0.06 -3.31 4.96 84.86 0.42 -2.89 16 24 N -0.93 -58.94 11.14 21.65 0.24 -58.70 16 25 Si 0.96 48.50 29.58 68.60 2.03 50.53 16 26 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 28 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 29 H 0.04 1.56 7.62 -2.39 -0.02 1.54 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.04 1.70 7.44 -2.39 -0.02 1.69 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.41 9.36 8.60 -92.71 -0.80 8.56 16 37 H 0.11 2.16 6.56 -2.39 -0.02 2.14 16 38 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 40 H 0.04 1.18 8.10 -2.38 -0.02 1.16 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 1.15 6.56 -2.39 -0.02 1.13 16 44 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 48 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.06 0.86 8.14 -2.38 -0.02 0.85 16 50 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.04 2.55 6.06 -2.39 -0.01 2.53 16 53 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 54 H 0.24 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -77.55 404.01 2.54 -75.01 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.05 Total: 22.34 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 4.54 Total: -2.68 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -4.02 Total: -116.83 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.05 Total: -28.37 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -77.55 2.54 -75.01 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132464482.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.339 kcal (2) G-P(sol) polarization free energy of solvation -77.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds